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Results: 18

Locating, tracing and sequencing multiple expanded genetic letters in complex DNA context via a bridge-base approach.
Published in:
Nucleic Acids Research, 2023, v. 51, n. 9, p. e52, doi. 10.1093/nar/gkad218
By:
- Wang, Honglei;
- Zhu, Wuyuan;
- Wang, Chao;
- Li, Xiaohuan;
- Wang, Luying;
- Huo, Bianbian;
- Mei, Hui;
- Zhu, Anlian;
- Zhang, Guisheng;
- Li, Lingjun
Publication type:
Article
Structural basis for guide RNA selection by the RESC1–RESC2 complex.
Published in:
Nucleic Acids Research, 2023, v. 51, n. 9, p. 4602, doi. 10.1093/nar/gkad217
By:
- Dolce, Luciano G;
- Nesterenko, Yevheniia;
- Walther, Leon;
- Weis, Félix;
- Kowalinski, Eva
Publication type:
Article
RNA interactome capture in Escherichia coli globally identifies RNA-binding proteins.
Published in:
Nucleic Acids Research, 2023, v. 51, n. 9, p. 4572, doi. 10.1093/nar/gkad216
By:
- Stenum, Thomas Søndergaard;
- Kumar, Ankith D;
- Sandbaumhüter, Friederike A;
- Kjellin, Jonas;
- Jerlström-Hultqvist, Jon;
- Andrén, Per E;
- Koskiniemi, Sanna;
- Jansson, Erik T;
- Holmqvist, Erik
Publication type:
Article
Rolling circle extension-assisted loop-mediated isothermal amplification (Rol-LAMP) method for locus-specific and visible detection of RNA N<sup>6</sup>-methyladenosine.
Published in:
Nucleic Acids Research, 2023, v. 51, n. 9, p. e51, doi. 10.1093/nar/gkad200
By:
- Li, Jiexin;
- Zhou, Jiawang;
- Xia, Yan;
- Rui, Yalan;
- Yang, Xianyuan;
- Xie, Guoyou;
- Jiang, Guanmin;
- Wang, Hongsheng
Publication type:
Article
A new method to synthesize multiple gRNA libraries and functional mapping of mammalian H3K4me3 regions.
Published in:
Nucleic Acids Research, 2023, v. 51, n. 9, p. e50, doi. 10.1093/nar/gkad198
By:
- Pan, Chen;
- Li, Ran;
- Shui, Liyan;
- Xiao, Zhengyun;
- Wang, Yali;
- Zhu, Jing;
- Wu, Chao;
- Zhang, Long;
- Jia, Junling;
- Zheng, Min
Publication type:
Article
BESST: a novel LncRNA knockout strategy with less genome perturbance.
Published in:
Nucleic Acids Research, 2023, v. 51, n. 9, p. e49, doi. 10.1093/nar/gkad197
By:
- Zhang, Shikuan;
- Chen, Yue;
- Dong, Kunzhe;
- Zhao, Yiwan;
- Wang, Yanzhi;
- Wang, Songmao;
- Qu, Chen;
- Xu, Naihan;
- Xie, Weidong;
- Zeng, Chunyu;
- Lyu, Qing Rex;
- Zhang, Yaou
Publication type:
Article
A hybrid structure determination approach to investigate the druggability of the nucleocapsid protein of SARS-CoV-2.
Published in:
Nucleic Acids Research, 2023, v. 51, n. 9, p. 4555, doi. 10.1093/nar/gkad195
By:
- Padroni, Giacomo;
- Bikaki, Maria;
- Novakovic, Mihajlo;
- Wolter, Antje C;
- Rüdisser, Simon H;
- Gossert, Alvar D;
- Leitner, Alexander;
- Allain, Frederic H-T
Publication type:
Article
Genome-encoded ABCF factors implicated in intrinsic antibiotic resistance in Gram-positive bacteria: VmlR2, Ard1 and CplR.
Published in:
Nucleic Acids Research, 2023, v. 51, n. 9, p. 4536, doi. 10.1093/nar/gkad193
By:
- Obana, Nozomu;
- Takada, Hiraku;
- Crowe-McAuliffe, Caillan;
- Iwamoto, Mizuki;
- Egorov, Artyom A;
- Wu, Kelvin J Y;
- Chiba, Shinobu;
- Murina, Victoriia;
- Paternoga, Helge;
- Tresco, Ben I C;
- Nomura, Nobuhiko;
- Myers, Andrew G;
- Atkinson, Gemma C;
- Wilson, Daniel N;
- Hauryliuk, Vasili
Publication type:
Article
A red light-triggered chemical tool for sequence-specific alkylation of G-quadruplex and I-motif DNA.
Published in:
Nucleic Acids Research, 2023, v. 51, n. 9, p. 4112, doi. 10.1093/nar/gkad189
By:
- Cadoni, Enrico;
- De Paepe, Lessandro;
- Colpaert, Gertjan;
- Tack, Ruben;
- Waegeman, Dries;
- Manicardi, Alex;
- Madder, Annemieke
Publication type:
Article
Biochemical characterisation of Mer3 helicase interactions and the protection of meiotic recombination intermediates.
Published in:
Nucleic Acids Research, 2023, v. 51, n. 9, p. 4363, doi. 10.1093/nar/gkad175
By:
- Altmannova, Veronika;
- Firlej, Magdalena;
- Müller, Franziska;
- Janning, Petra;
- Rauleder, Rahel;
- Rousova, Dorota;
- Schäffler, Andreas;
- Bange, Tanja;
- Weir, John R
Publication type:
Article
Excessive transcription-replication conflicts are a vulnerability of BRCA1-mutant cancers.
Published in:
Nucleic Acids Research, 2023, v. 51, n. 9, p. 4341, doi. 10.1093/nar/gkad172
By:
- Patel, Parasvi S;
- Algouneh, Arash;
- Krishnan, Rehna;
- Reynolds, John J;
- Nixon, Kevin C J;
- Hao, Jun;
- Lee, Jihoon;
- Feng, Yue;
- Fozil, Chehronai;
- Stanic, Mia;
- Yerlici, Talya;
- Su, Peiran;
- Soares, Fraser;
- Liedtke, Elisabeth;
- Prive, Gil;
- Baider, Gary D;
- Pujana, Miquel Angel;
- Mekhail, Karim;
- He, Housheng Hansen;
- Hakem, Anne
Publication type:
Article
BACH1 deficiency prevents neointima formation and maintains the differentiated phenotype of vascular smooth muscle cells by regulating chromatin accessibility.
Published in:
Nucleic Acids Research, 2023, v. 51, n. 9, p. 4284, doi. 10.1093/nar/gkad120
By:
- Guo, Jieyu;
- Qiu, Jingjing;
- Jia, Mengping;
- Li, Qinhan;
- Wei, Xiangxiang;
- Li, Liliang;
- Pan, Qi;
- Jin, Jiayu;
- Ge, Fei;
- Ma, Siyu;
- He, Yunquan;
- Lin, Jiayi;
- Li, Yongbo;
- Ma, Jinghua;
- Jiang, Nan;
- Zhi, Xiuling;
- Jiang, Lindi;
- Zhang, Jianyi;
- Osto, Elena;
- Jing, Qing
Publication type:
Article
Oncogenic YAP mediates changes in chromatin accessibility and activity that drive cell cycle gene expression and cell migration.
Published in:
Nucleic Acids Research, 2023, v. 51, n. 9, p. 4266, doi. 10.1093/nar/gkad107
By:
- Fetiva, Maria Camila;
- Liss, Franziska;
- Gertzmann, Dörthe;
- Thomas, Julius;
- Gantert, Benedikt;
- Vogl, Magdalena;
- Sira, Nataliia;
- Weinstock, Grit;
- Kneitz, Susanne;
- Ade, Carsten P;
- Gaubatz, Stefan
Publication type:
Article
Linker histone H1 modulates defense priming and immunity in plants.
Published in:
Nucleic Acids Research, 2023, v. 51, n. 9, p. 4252, doi. 10.1093/nar/gkad106
By:
- Sheikh, Arsheed H;
- Nawaz, Kashif;
- Tabassum, Naheed;
- Almeida-Trapp, Marilia;
- Mariappan, Kiruthiga G;
- Alhoraibi, Hanna;
- Rayapuram, Naganand;
- Aranda, Manuel;
- Groth, Martin;
- Hirt, Heribert
Publication type:
Article
HPV integration generates a cellular super-enhancer which functions as ecDNA to regulate genome-wide transcription.
Published in:
Nucleic Acids Research, 2023, v. 51, n. 9, p. 4237, doi. 10.1093/nar/gkad105
By:
- Tian, Rui;
- Huang, Zheying;
- Li, Lifang;
- Yuan, Jingping;
- Zhang, Qinghua;
- Meng, Lirong;
- Lang, Bin;
- Hong, Yongfeng;
- Zhong, Chaoyue;
- Tian, Xun;
- Cui, Zifeng;
- Jin, Zhuang;
- Liu, Jiashuo;
- Huang, Zhaoyue;
- Wang, Yuyan;
- Chen, Ye;
- Hu, Zheng
Publication type:
Article
Nearest-neighbor parameters for the prediction of RNA duplex stability in diverse in vitro and cellular-like crowding conditions.
Published in:
Nucleic Acids Research, 2023, v. 51, n. 9, p. 4101, doi. 10.1093/nar/gkad020
By:
- Ghosh, Saptarshi;
- Takahashi, Shuntaro;
- Banerjee, Dipanwita;
- Ohyama, Tatsuya;
- Endoh, Tamaki;
- Tateishi-Karimata, Hisae;
- Sugimoto, Naoki
Publication type:
Article
Site-directed biochemical analyses reveal that the switchable C-terminus of Rpc31 contributes to RNA polymerase III transcription initiation.
Published in:
Nucleic Acids Research, 2023, v. 51, n. 9, p. 4223, doi. 10.1093/nar/gkac1163
By:
- Shekhar, Arvind Chandra;
- Sun, Yuan-En;
- Khoo, Seok-Kooi;
- Lin, Yu-Chun;
- Malau, Ester Betaria;
- Chang, Wei-Hau;
- Chen, Hung-Ta
Publication type:
Article
SirA inhibits the essential DnaA:DnaD interaction to block helicase recruitment during Bacillus subtilis sporulation.
Published in:
Nucleic Acids Research, 2023, v. 51, n. 9, p. 4302, doi. 10.1093/nar/gkac1060
By:
- Winterhalter, Charles;
- Stevens, Daniel;
- Fenyk, Stepan;
- Pelliciari, Simone;
- Marchand, Elie;
- Soultanas, Panos;
- Ilangovan, Aravindan;
- Murray, Heath
Publication type:
Article