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Low Replicative Stress Triggers Cell-Type Specific Inheritable Advanced Replication Timing.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 9, p. 4959, doi. 10.3390/ijms22094959
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- Article
Molecular Inverse Comorbidity between Alzheimer's Disease and Lung Cancer: New Insights from Matrix Factorization.
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- International Journal of Molecular Sciences, 2019, v. 20, n. 13, p. 3114, doi. 10.3390/ijms20133114
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- Article
Automatic identification of informative regions with epigenomic changes associated to hematopoiesis.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. 16, p. 9244, doi. 10.1093/nar/gkx618
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- Article
In silico characterization and prediction of global protein–mRNA interactions in yeast.
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- Nucleic Acids Research, 2011, v. 39, n. 14, p. 5826, doi. 10.1093/nar/gkr160
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- Publication type:
- Article
Tysserand—fast and accurate reconstruction of spatial networks from bioimages.
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- Bioinformatics, 2021, v. 37, n. 21, p. 3989, doi. 10.1093/bioinformatics/btab490
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- Publication type:
- Article
3D chromatin interactions involving Drosophila insulators are infrequent but preferential and arise before TADs and transcription.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42485-y
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- Article
Publisher Correction: Epigenome-wide analysis of T-cell large granular lymphocytic leukemia identifies BCL11B as a potential biomarker.
- Published in:
- 2023
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- Correction Notice
Epigenome-wide analysis of T-cell large granular lymphocytic leukemia identifies BCL11B as a potential biomarker.
- Published in:
- Clinical Epigenetics, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13148-022-01362-z
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- Publication type:
- Article
Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics.
- Published in:
- 2021
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- Publication type:
- Correction Notice
Community-wide hackathons to identify central themes in single-cell multi-omics.
- Published in:
- 2021
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- Publication type:
- Letter
Community-wide hackathons to identify central themes in single-cell multi-omics.
- Published in:
- 2021
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- Publication type:
- Letter
Community-wide hackathons to identify central themes in single-cell multi-omics.
- Published in:
- 2021
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- Publication type:
- Letter
AnGeLi: A Tool for the Analysis of Gene Lists from Fission Yeast.
- Published in:
- Frontiers in Genetics, 2015, v. 6, p. 1, doi. 10.3389/fgene.2015.00330
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- Article
Activation of Vitamin D Receptor Pathway Enhances Differentiating Capacity in Acute Myeloid Leukemia with Isocitrate Dehydrogenase Mutations.
- Published in:
- Cancers, 2021, v. 13, n. 20, p. 5243, doi. 10.3390/cancers13205243
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- Article
Insights on TAM Formation from a Boolean Model of Macrophage Polarization Based on In Vitro Studies.
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- Cancers, 2020, v. 12, n. 12, p. 3664, doi. 10.3390/cancers12123664
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- Article
Unveiling new disease, pathway, and gene associations via multi-scale neural network.
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- PLoS ONE, 2020, v. 15, n. 4, p. 1, doi. 10.1371/journal.pone.0231059
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- Article
Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity.
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- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1003-3
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- Publication type:
- Article
From time-series transcriptomics to gene regulatory networks: A review on inference methods.
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- PLoS Computational Biology, 2023, v. 19, n. 9, p. 1, doi. 10.1371/journal.pcbi.1011254
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- Publication type:
- Article
3D chromatin connectivity underlies replication origin efficiency in mouse embryonic stem cells.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. 21, p. 12149, doi. 10.1093/nar/gkac1111
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- Publication type:
- Article
STAG2 loss-of-function affects short-range genomic contacts and modulates the basal-luminal transcriptional program of bladder cancer cells.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. 19, p. 11005, doi. 10.1093/nar/gkab864
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- Publication type:
- Article
Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types.
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- Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1156-8
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- Publication type:
- Article
Ceramide metabolism alterations contribute to Tumor Necrosis Factor-induced melanoma dedifferentiation and predict resistance to immune checkpoint inhibitors in advanced melanoma patients.
- Published in:
- Frontiers in Immunology, 2024, p. 01, doi. 10.3389/fimmu.2024.1421432
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- Publication type:
- Article
Preface to the special issue “Complexity in the Oil Industry 2007”.
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- Computational Geosciences, 2009, v. 13, n. 2, p. 151, doi. 10.1007/s10596-008-9117-7
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- Article
Epigenetic and Transcriptional Variability Shape Phenotypic Plasticity.
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- BioEssays, 2018, v. 40, n. 2, p. 1, doi. 10.1002/bies.201700148
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- Publication type:
- Article
Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer.
- Published in:
- Molecular Autism, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13229-019-0262-8
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- Publication type:
- Article
ChiCMaxima: a robust and simple pipeline for detection and visualization of chromatin looping in Capture Hi-C.
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- Genome Biology, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s13059-019-1706-3
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- Article
Topology of functional networks predicts physical binding of proteins.
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- Bioinformatics, 2012, v. 28, n. 16, p. 2137
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- Publication type:
- Article
Interpreting molecular similarity between patients as a determinant of disease comorbidity relationships.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16540-x
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- Publication type:
- Article
A Boolean gene regulatory model of heterosis and speciation.
- Published in:
- BMC Evolutionary Biology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12862-015-0298-0
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- Article