Works matching IS 03051048 AND DT 2021 AND VI 49 AND IP 19

Results: 46

Correction to 'Optimized design of antisense oligomers for targeted rRNA depletion'.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11406, doi. 10.1093/nar/gkab919

By:

Phelps, Wesley A;
Carlson, Anne E;
Lee, Miler T

Publication type:

Article

Overcoming GNA/RNA base-pairing limitations using isonucleotides improves the pharmacodynamic activity of ESC+ GalNAc-siRNAs.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 10851, doi. 10.1093/nar/gkab916

By:

Schlegel, Mark K;
Matsuda, Shigeo;
Brown, Christopher R;
Harp, Joel M;
Barry, Joseph D;
Berman, Daniel;
Castoreno, Adam;
Schofield, Sally;
Szeto, John;
Manoharan, Muthiah;
Charissé, Klaus;
Egli, Martin;
Maier, Martin A

Publication type:

Article

Correction to 'Theoretical basis for stabilizing messenger RNA through secondary structure design'.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11405, doi. 10.1093/nar/gkab911

By:

Wayment-Steele, Hannah K;
Kim, Do Soon;
Choe, Christian A;
Nicol, John J;
Wellington-Oguri, Roger;
Watkins, Andrew M;
Parra Sperberg, R Andres;
Huang, Po-Ssu;
Participants, Eterna;
Das, Rhiju

Publication type:

Article

Structural basis of chromatin regulation by histone variant H2A.Z.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11379, doi. 10.1093/nar/gkab907

By:

Lewis, Tyler S;
Sokolova, Vladyslava;
Jung, Harry;
Ng, Honkit;
Tan, Dongyan

Publication type:

Article

phage defence island of a multidrug resistant plasmid uses both BREX and type IV restriction for complementary protection from viruses.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11257, doi. 10.1093/nar/gkab906

By:

Picton, David M;
Luyten, Yvette A;
Morgan, Richard D;
Nelson, Andrew;
Smith, Darren L;
Dryden, David T F;
Hinton, Jay C D;
Blower, Tim R

Publication type:

Article

Calling large indels in 1047 Arabidopsis with IndelEnsembler.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 10879, doi. 10.1093/nar/gkab904

By:

Liu, Dong-Xu;
Rajaby, Ramesh;
Wei, Lu-Lu;
Zhang, Lei;
Yang, Zhi-Quan;
Yang, Qing-Yong;
Sung, Wing-Kin

Publication type:

Article

coordinated replication of Vibrio cholerae's two chromosomes required the acquisition of a unique domain by the RctB initiator.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11119, doi. 10.1093/nar/gkab903

By:

Fournes, Florian;
Niault, Theophile;
Czarnecki, Jakub;
Tissier-Visconti, Alvise;
Mazel, Didier;
Val, Marie-Eve

Publication type:

Article

replication-linked mutational gradient drives somatic mutation accumulation and influences germline polymorphisms and genome composition in mitochondrial DNA.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11103, doi. 10.1093/nar/gkab901

By:

Sanchez-Contreras, Monica;
Sweetwyne, Mariya T;
Kohrn, Brendan F;
Tsantilas, Kristine A;
Hipp, Michael J;
Schmidt, Elizabeth K;
Fredrickson, Jeanne;
Whitson, Jeremy A;
Campbell, Matthew D;
Rabinovitch, Peter S;
Marcinek, David J;
Kennedy, Scott R

Publication type:

Article

comprehensive interactomes of human adenosine RNA methyltransferases and demethylases reveal distinct functional and regulatory features.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 10895, doi. 10.1093/nar/gkab900

By:

Covelo-Molares, Helena;
Obrdlik, Ales;
Poštulková, Ivana;
Dohnálková, Michaela;
Gregorová, Pavlína;
Ganji, Ranjani;
Potěšil, David;
Gawriyski, Lisa;
Varjosalo, Markku;
Vaňáčová, Štěpánka

Publication type:

Article

Modulation of the intrinsic chromatin binding property of HIV-1 integrase by LEDGF/p75.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11241, doi. 10.1093/nar/gkab886

By:

Lapaillerie, Delphine;
Lelandais, Benoît;
Mauro, Eric;
Lagadec, Floriane;
Tumiotto, Camille;
Miskey, Csaba;
Ferran, Guillaume;
Kuschner, Natacha;
Calmels, Christina;
Métifiot, Mathieu;
Rooryck, Caroline;
Ivics, Zoltan;
Ruff, Marc;
Zimmer, Christophe;
Lesbats, Paul;
Toutain, Jérôme;
Parissi, Vincent

Publication type:

Article

Streamlined CRISPR genome engineering in wild-type bacteria using SIBR-Cas.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11392, doi. 10.1093/nar/gkab893

By:

Patinios, Constantinos;
Creutzburg, Sjoerd C A;
Arifah, Adini Q;
Adiego-Pérez, Belén;
Gyimah, Evans A;
Ingham, Colin J;
Kengen, Servé W M;
van der Oost, John;
Staals, Raymond H J

Publication type:

Article

Binding of DNA origami to lipids: maximizing yield and switching via strand displacement.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 10835, doi. 10.1093/nar/gkab888

By:

Singh, Jasleen Kaur Daljit;
Darley, Esther;
Ridone, Pietro;
Gaston, James P;
Abbas, Ali;
Wickham, Shelley F J;
Baker, Matthew A B

Publication type:

Article

Multifaceted impact of a nucleoside monophosphate kinase on 5′-end-dependent mRNA degradation in bacteria.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11038, doi. 10.1093/nar/gkab884

By:

Hui, Monica P;
Belasco, Joel G

Publication type:

Article

Identification and classification of antiviral defence systems in bacteria and archaea with PADLOC reveals new system types.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 10868, doi. 10.1093/nar/gkab883

By:

Payne, Leighton J;
Todeschini, Thomas C;
Wu, Yi;
Perry, Benjamin J;
Ronson, Clive W;
Fineran, Peter C;
Nobrega, Franklin L;
Jackson, Simon A

Publication type:

Article

role for AKT1 in nonsense-mediated mRNA decay.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11022, doi. 10.1093/nar/gkab882

By:

Palma, Martine;
Leroy, Catherine;
Salomé-Desnoulez, Sophie;
Werkmeister, Elisabeth;
Kong, Rebekah;
Mongy, Marc;
Le Hir, Hervé;
Lejeune, Fabrice

Publication type:

Article

USP39 promotes non-homologous end-joining repair by poly(ADP-ribose)-induced liquid demixing.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11083, doi. 10.1093/nar/gkab892

By:

Kim, Jae Jin;
Lee, Seo Yun;
Hwang, Yiseul;
Kim, Soyeon;
Chung, Jee Min;
Park, Sangwook;
Yoon, Junghyun;
Yun, Hansol;
Ji, Jae-Hoon;
Chae, Sunyoung;
Cho, Hyeseong;
Kim, Chan Gil;
Dawson, Ted M;
Kim, Hongtae;
Dawson, Valina L;
Kang, Ho Chul

Publication type:

Article

RNA chaperone StpA enables fast RNA refolding by destabilization of mutually exclusive base pairs within competing secondary structure elements.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11337, doi. 10.1093/nar/gkab876

By:

Hohmann, Katharina F;
Blümler, Anja;
Heckel, Alexander;
Fürtig, Boris

Publication type:

Article

Bacteriophage Twort protein Gp168 is a β-clamp inhibitor by occupying the DNA sliding channel.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11367, doi. 10.1093/nar/gkab875

By:

Liu, Bing;
Li, Shanshan;
Liu, Yang;
Chen, Huan;
Hu, Zhenyue;
Wang, Zhihao;
Zhao, Yimin;
Zhang, Lei;
Ma, Biyun;
Wang, Hongliang;
Matthews, Steve;
Wang, Yawen;
Zhang, Kaiming

Publication type:

Article

structural and functional workings of KEOPS.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 10818, doi. 10.1093/nar/gkab865

By:

Beenstock, Jonah;
Sicheri, Frank

Publication type:

Article

pathogen-specific sRNA influences enterohemorrhagic Escherichia coli fitness and virulence in part by direct interaction with the transcript encoding the ethanolamine utilization regulatory factor EutR.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 10988, doi. 10.1093/nar/gkab863

By:

Sauder, Amber B;
Kendall, Melissa M

Publication type:

Article

Single-molecule conformational dynamics of a transcription factor reveals a continuum of binding modes controlling association and dissociation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11211, doi. 10.1093/nar/gkab874

By:

Chen, Wei;
Lu, Wei;
Wolynes, Peter G;
Komives, Elizabeth A

Publication type:

Article

Oncogenic KRAS drives radioresistance through upregulation of NRF2-53BP1-mediated non-homologous end-joining repair.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11067, doi. 10.1093/nar/gkab871

By:

Yang, Linlin;
Shen, Changxian;
Estrada-Bernal, Adriana;
Robb, Ryan;
Chatterjee, Moumita;
Sebastian, Nikhil;
Webb, Amy;
Mo, Xiaokui;
Chen, Wei;
Krishnan, Sunil;
Williams, Terence M

Publication type:

Article

Nucleolar TFIIE plays a role in ribosomal biogenesis and performance.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11197, doi. 10.1093/nar/gkab866

By:

Phan, Tamara;
Maity, Pallab;
Ludwig, Christina;
Streit, Lisa;
Michaelis, Jens;
Tsesmelis, Miltiadis;
Scharffetter-Kochanek, Karin;
Iben, Sebastian

Publication type:

Article

Single molecule/particle tracking analysis program SMTracker 2.0 reveals different dynamics of proteins within the RNA degradosome complex in Bacillus subtilis.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. e112, doi. 10.1093/nar/gkab696

By:

Oviedo-Bocanegra, Luis M;
Hinrichs, Rebecca;
Rotter, Daniel Andreas Orlando;
Dersch, Simon;
Graumann, Peter L

Publication type:

Article

G3BP1 binds to guanine quadruplexes in mRNAs to modulate their stabilities.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11323, doi. 10.1093/nar/gkab873

By:

He, Xiaomei;
Yuan, Jun;
Wang, Yinsheng

Publication type:

Article

standard knockout procedure alters expression of adjacent loci at the translational level.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11134, doi. 10.1093/nar/gkab872

By:

Egorov, Artyom A;
Alexandrov, Alexander I;
Urakov, Valery N;
Makeeva, Desislava S;
Edakin, Roman O;
Kushchenko, Artem S;
Gladyshev, Vadim N;
Kulakovskiy, Ivan V;
Dmitriev, Sergey E

Publication type:

Article

Quantitative assessment of engineered Cas9 variants for target specificity enhancement by single-molecule reaction pathway analysis.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11312, doi. 10.1093/nar/gkab858

By:

Bak, So Young;
Jung, Youngri;
Park, Jinho;
Sung, Keewon;
Jang, Hyeon-Ki;
Bae, Sangsu;
Kim, Seong Keun

Publication type:

Article

Single molecule characterization of the binding kinetics of a transcription factor and its modulation by DNA sequence and methylation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 10975, doi. 10.1093/nar/gkab843

By:

Khamis, Hadeel;
Rudnizky, Sergei;
Melamed, Philippa;
Kaplan, Ariel

Publication type:

Article

Rapid identification of methylase specificity (RIMS-seq) jointly identifies methylated motifs and generates shotgun sequencing of bacterial genomes.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. e113, doi. 10.1093/nar/gkab705

By:

Baum, Chloé;
Lin, Yu-Cheng;
Fomenkov, Alexey;
Anton, Brian P;
Chen, Lixin;
Yan, Bo;
Evans, Thomas C;
Roberts, Richard J;
Tolonen, Andrew C;
Ettwiller, Laurence

Publication type:

Article

STAG2 loss-of-function affects short-range genomic contacts and modulates the basal-luminal transcriptional program of bladder cancer cells.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11005, doi. 10.1093/nar/gkab864

By:

Richart, Laia;
Lapi, Eleonora;
Pancaldi, Vera;
Cuenca-Ardura, Mirabai;
Pau, Enrique Carrillo-de-Santa;
Madrid-Mencía, Miguel;
Neyret-Kahn, Hélène;
Radvanyi, François;
Rodríguez, Juan Antonio;
Cuartero, Yasmina;
Serra, François;
Le Dily, François;
Valencia, Alfonso;
Marti-Renom, Marc A;
Real, Francisco X

Publication type:

Article

USP37 regulates DNA damage response through stabilizing and deubiquitinating BLM.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11224, doi. 10.1093/nar/gkab842

By:

Wu, Chenming;
Chang, Yiming;
Chen, Junliang;
Su, Yang;
Li, Lei;
Chen, Yuping;
Li, Yunhui;
Wu, Jinhuan;
Huang, Jinzhou;
Zhao, Fei;
Wang, Wenrui;
Yin, Hui;
Wang, Shunli;
Jin, Mingpeng;
Lou, Zhenkun;
Zhu, Wei-Guo;
Luo, Kuntian;
Zhang, Jie;
Yuan, Jian

Publication type:

Article

Screening by deep sequencing reveals mediators of microRNA tailing in C. elegans.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11167, doi. 10.1093/nar/gkab840

By:

Vieux, Karl-Frédéric;
Prothro, Katherine P;
Kelley, Leanne H;
Palmer, Cameron;
Maine, Eleanor M;
Veksler-Lublinsky, Isana;
McJunkin, Katherine

Publication type:

Article

eIF3j facilitates loading of release factors into the ribosome.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11181, doi. 10.1093/nar/gkab854

By:

Egorova, Tatiana;
Biziaev, Nikita;
Shuvalov, Alexey;
Sokolova, Elizaveta;
Mukba, Sabina;
Evmenov, Konstantin;
Zotova, Maria;
Kushchenko, Artem;
Shuvalova, Ekaterina;
Alkalaeva, Elena

Publication type:

Article

dominant-negative SOX18 mutant disrupts multiple regulatory layers essential to transcription factor activity.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 10931, doi. 10.1093/nar/gkab820

By:

McCann, Alex J;
Lou, Jieqiong;
Moustaqil, Mehdi;
Graus, Matthew S;
Blum, Ailisa;
Fontaine, Frank;
Liu, Hui;
Luu, Winnie;
Rudolffi-Soto, Paulina;
Koopman, Peter;
Sierecki, Emma;
Gambin, Yann;
Meunier, Frédéric A;
Liu, Zhe;
Hinde, Elizabeth;
Francois, Mathias

Publication type:

Article

ZNF598 co-translationally titrates poly(GR) protein implicated in the pathogenesis of C9ORF72-associated ALS/FTD.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11294, doi. 10.1093/nar/gkab834

By:

Park, Jumin;
Lee, Jongbo;
Kim, Ji-hyung;
Lee, Jongbin;
Park, Heeju;
Lim, Chunghun

Publication type:

Article

horizontal transfer of Pseudomonas aeruginosa PA14 ICE PAPI-1 is controlled by a transcriptional triad between TprA, NdpA2 and MvaT.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 10956, doi. 10.1093/nar/gkab827

By:

Dangla-Pélissier, Gauthier;
Roux, Nicolas;
Schmidt, Victoria;
Chambonnier, Gaël;
Ba, Moly;
Sebban-Kreuzer, Corinne;
de Bentzmann, Sophie;
Giraud, Caroline;
Bordi, Christophe

Publication type:

Article

Structural dissection of sequence recognition and catalytic mechanism of human LINE-1 endonuclease.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11350, doi. 10.1093/nar/gkab826

By:

Miller, Ian;
Totrov, Max;
Korotchkina, Lioubov;
Kazyulkin, Denis N;
Gudkov, Andrei V;
Korolev, Sergey

Publication type:

Article

Cockayne syndrome group A and ferrochelatase finely tune ribosomal gene transcription and its response to UV irradiation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 10911, doi. 10.1093/nar/gkab819

By:

Lanzafame, Manuela;
Branca, Giulia;
Landi, Claudia;
Qiang, Mingyue;
Vaz, Bruno;
Nardo, Tiziana;
Ferri, Debora;
Mura, Manuela;
Iben, Sebastian;
Stefanini, Miria;
Peverali, Fiorenzo A;
Bini, Luca;
Orioli, Donata

Publication type:

Article

Atypical molecular features of RNA silencing against the phloem-restricted polerovirus TuYV.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11274, doi. 10.1093/nar/gkab802

By:

Clavel, Marion;
Lechner, Esther;
Incarbone, Marco;
Vincent, Timothée;
Cognat, Valerie;
Smirnova, Ekaterina;
Lecorbeiller, Maxime;
Brault, Véronique;
Ziegler-Graff, Véronique;
Genschik, Pascal

Publication type:

Article

Non-canonical LexA proteins regulate the SOS response in the Bacteroidetes.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11050, doi. 10.1093/nar/gkab773

By:

Sánchez-Osuna, Miquel;
Cortés, Pilar;
Lee, Mark;
Smith, Aaron T;
Barbé, Jordi;
Erill, Ivan

Publication type:

Article

Translational activators and mitoribosomal isoforms cooperate to mediate mRNA-specific translation in Schizosaccharomyces pombe mitochondria.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 11145, doi. 10.1093/nar/gkab789

By:

Herbert, Christopher J;
Labarre-Mariotte, Sylvie;
Cornu, David;
Sophie, Cyrielle;
Panozzo, Cristina;
Michel, Thomas;
Dujardin, Geneviève;
Bonnefoy, Nathalie

Publication type:

Article

SpecHap: a diploid phasing algorithm based on spectral graph theory.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. e114, doi. 10.1093/nar/gkab709

By:

YU, Yonghan;
Chen, Lingxi;
Miao, Xinyao;
Li, Shuai Cheng

Publication type:

Article

Kinetics of protein-assisted nucleic acid interconversion monitored by transient time resolved fluorescence in microfluidic droplets.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. e111, doi. 10.1093/nar/gkab687

By:

Grytsyk, Natalia;
Cianfarani, Damien;
Crégut, Olivier;
Richert, Ludovic;
Boudier, Christian;
Humbert, Nicolas;
Didier, Pascal;
Mély, Yves;
Léonard, Jérémie

Publication type:

Article

Epitome: predicting epigenetic events in novel cell types with multi-cell deep ensemble learning.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. e110, doi. 10.1093/nar/gkab676

By:

Morrow, Alyssa Kramer;
Hughes, John Weston;
Singh, Jahnavi;
Joseph, Anthony Douglas;
Yosef, Nir

Publication type:

Article

Calling differentially methylated regions from whole genome bisulphite sequencing with DMRcate.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. e109, doi. 10.1093/nar/gkab637

By:

Peters, Timothy J;
Buckley, Michael J;
Chen, Yunshun;
Smyth, Gordon K;
Goodnow, Christopher C;
Clark, Susan J

Publication type:

Article

Uniform affinity-tuning of N-methyl-aminoacyl-tRNAs to EF-Tu enhances their multiple incorporation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 10807, doi. 10.1093/nar/gkab288

By:

Iwane, Yoshihiko;
Kimura, Hiroyuki;
Katoh, Takayuki;
Suga, Hiroaki

Publication type:

Article