Works matching IS 03051048 AND DT 2021 AND VI 49 AND IP 12

Results: 46

B-CePs as cross-linking probes for the investigation of RNA higher-order structure.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6660, doi. 10.1093/nar/gkab468

By:

Sosic, Alice;
Göttlich, Richard;
Fabris, Dan;
Gatto, Barbara

Publication type:

Article

A new assay capturing chromosome fusions shows a protection trade-off at telomeres and NHEJ vulnerability to low-density ionizing radiation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6817, doi. 10.1093/nar/gkab502

By:

Pobiega, Sabrina;
Alibert, Olivier;
Marcand, Stéphane

Publication type:

Article

Phosphorylation of a reinitiation supporting protein, RISP, determines its function in translation reinitiation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6908, doi. 10.1093/nar/gkab501

By:

Mancera-Martínez, Eder;
Dong, Yihan;
Makarian, Joelle;
Srour, Ola;
Thiébeauld, Odon;
Jamsheer, Muhammed;
Chicher, Johana;
Hammann, Philippe;
Schepetilnikov, Mikhail;
Ryabova, Lyubov A

Publication type:

Article

G-quadruplex binders as cytostatic modulators of innate immune genes in cancer cells.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6673, doi. 10.1093/nar/gkab500

By:

Miglietta, Giulia;
Russo, Marco;
Duardo, Renée C;
Capranico, Giovanni

Publication type:

Article

Correction to 'Secondary structure determination of conserved SARS-CoV-2 RNA elements by NMR spectroscopy'.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 7204, doi. 10.1093/nar/gkab568

By:

Wacker, Anna;
Weigand, Julia E;
Akabayov, Sabine R;
Altincekic, Nadide;
Bains, Jasleen Kaur;
Banijamali, Elnaz;
Binas, Oliver;
Castillo-Martinez, Jesus;
Cetiner, Erhan;
Ceylan, Betül;
Chiu, Liang-Yuan;
Davila-Calderon, Jesse;
Dhamotharan, Karthikeyan;
Duchardt-Ferner, Elke;
Ferner, Jan;
Frydman, Lucio;
Fürtig, Boris;
Gallego, José;
Grün, J Tassilo;
Hacker, Carolin

Publication type:

Article

Correction to 'GreenPhylDB v5: a comparative pangenomic database for plant genomes'.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 7203, doi. 10.1093/nar/gkab564

By:

Guignon, Valentin;
Toure, Abdel;
Droc, Gaëtan;
Dufayard, Jean-François;
Conte, Matthieu;
Rouard, Mathieu

Publication type:

Article

Molecular characterization of both transesterification reactions of the group II intron circularization pathway.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6996, doi. 10.1093/nar/gkab537

By:

LaRoche-Johnston, Félix;
Monat, Caroline;
Verreault, Erika;
Cousineau, Benoit

Publication type:

Article

Mechanical diversity and folding intermediates of parallel-stranded G-quadruplexes with a bulge.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 7179, doi. 10.1093/nar/gkab531

By:

Zhang, Yashuo;
Cheng, Yuanlei;
Chen, Juannan;
Zheng, Kewei;
You, Huijuan

Publication type:

Article

Discovery of a pre-mRNA structural scaffold as a contributor to the mammalian splicing code.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 7103, doi. 10.1093/nar/gkab533

By:

Saha, Kaushik;
Fernandez, Mike Minh;
Biswas, Tapan;
Joseph, Simpson;
Ghosh, Gourisankar

Publication type:

Article

Quasi-essentiality of RNase Y in Bacillus subtilis is caused by its critical role in the control of mRNA homeostasis.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 7088, doi. 10.1093/nar/gkab528

By:

Benda, Martin;
Woelfel, Simon;
Faßhauer, Patrick;
Gunka, Katrin;
Klumpp, Stefan;
Poehlein, Anja;
Kálalová, Debora;
Šanderová, Hana;
Daniel, Rolf;
Krásný, Libor;
Stülke, Jörg

Publication type:

Article

TnpA<sub>REP</sub> and REP sequences dissemination in bacterial genomes: REP recognition determinants.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6982, doi. 10.1093/nar/gkab524

By:

Corneloup, Alix;
Caumont-Sarcos, Anne;
Kamgoue, Alain;
Marty, Brigitte;
Le, Phan Thai Nguyen;
Siguier, Patricia;
Guynet, Catherine;
Ton-Hoang, Bao

Publication type:

Article

NOVA2 regulates neural circRNA biogenesis.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6849, doi. 10.1093/nar/gkab523

By:

Knupp, David;
Cooper, Daphne A;
Saito, Yuhki;
Darnell, Robert B;
Miura, Pedro

Publication type:

Article

The dynamic cycle of bacterial translation initiation factor IF3.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6958, doi. 10.1093/nar/gkab522

By:

Nakamoto, Jose A;
Evangelista, Wilfredo;
Vinogradova, Daria S;
Konevega, Andrey L;
Spurio, Roberto;
Fabbretti, Attilio;
Milón, Pohl

Publication type:

Article

Alternative dimerization is required for activity and inhibition of the HEPN ribonuclease RnlA.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 7164, doi. 10.1093/nar/gkab513

By:

Garcia-Rodriguez, Gabriela;
Charlier, Daniel;
Wilmaerts, Dorien;
Michiels, Jan;
Loris, Remy

Publication type:

Article

Formation of frameshift-stimulating RNA pseudoknots is facilitated by remodeling of their folding intermediates.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6941, doi. 10.1093/nar/gkab512

By:

Hsu, Chiung-Fang;
Chang, Kai-Chun;
Chen, Yi-Lan;
Hsieh, Po-Szu;
Lee, An-I;
Tu, Jui-Yun;
Chen, Yu-Ting;
Wen, Jin-Der

Publication type:

Article

Rrp1 translocase and ubiquitin ligase activities restrict the genome destabilising effects of Rad51 in fission yeast.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6832, doi. 10.1093/nar/gkab511

By:

Muraszko, Jakub;
Kramarz, Karol;
Argunhan, Bilge;
Ito, Kentaro;
Baranowska, Gabriela;
Kurokawa, Yumiko;
Murayama, Yasuto;
Tsubouchi, Hideo;
Lambert, Sarah;
Iwasaki, Hiroshi;
Dziadkowiec, Dorota

Publication type:

Article

Stabilization of Hfq-mediated translational repression by the co-repressor Crc in Pseudomonas aeruginosa.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 7075, doi. 10.1093/nar/gkab510

By:

Malecka, Ewelina M;
Bassani, Flavia;
Dendooven, Tom;
Sonnleitner, Elisabeth;
Rozner, Marlena;
Albanese, Tanino G;
Resch, Armin;
Luisi, Ben;
Woodson, Sarah;
Bläsi, Udo

Publication type:

Article

Acetylation of the CspA family protein CspC controls the type III secretion system through translational regulation of exsA in Pseudomonas aeruginosa.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6756, doi. 10.1093/nar/gkab506

By:

Li, Shouyi;
Weng, Yuding;
Li, Xiaoxiao;
Yue, Zhuo;
Chai, Zhouyi;
Zhang, Xinxin;
Gong, Xuetao;
Pan, Xiaolei;
Jin, Yongxin;
Bai, Fang;
Cheng, Zhihui;
Wu, Weihui

Publication type:

Article

Chemical and photochemical error rates in light-directed synthesis of complex DNA libraries.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6687, doi. 10.1093/nar/gkab505

By:

Lietard, Jory;
Leger, Adrien;
Erlich, Yaniv;
Sadowski, Norah;
Timp, Winston;
Somoza, Mark M

Publication type:

Article

Single-round deoxyribozyme discovery.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6971, doi. 10.1093/nar/gkab504

By:

Streckerová, Tereza;
Kurfürst, Jaroslav;
Curtis, Edward A

Publication type:

Article

The DEAD-box RNA helicase RhlE2 is a global regulator of Pseudomonas aeruginosa lifestyle and pathogenesis.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6925, doi. 10.1093/nar/gkab503

By:

Hausmann, Stéphane;
Gonzalez, Diego;
Geiser, Johan;
Valentini, Martina

Publication type:

Article

A plasmid toolbox for controlled gene expression across the Proteobacteria.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 7189, doi. 10.1093/nar/gkab496

By:

Schuster, Layla A;
Reisch, Christopher R

Publication type:

Article

Mechanistic insights into translation inhibition by aminoglycoside antibiotic arbekacin.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6880, doi. 10.1093/nar/gkab495

By:

Parajuli, Narayan Prasad;
Mandava, Chandra Sekhar;
Pavlov, Michael Y;
Sanyal, Suparna

Publication type:

Article

The ribosome assembly factor Nop53 has a structural role in the formation of nuclear pre-60S intermediates, affecting late maturation events.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 7053, doi. 10.1093/nar/gkab494

By:

Bagatelli, Felipe F M;
de Luna Vitorino, Francisca N;
da Cunha, Julia P C;
Oliveira, Carla C

Publication type:

Article

INO80 promotes H2A.Z occupancy to regulate cell fate transition in pluripotent stem cells.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6739, doi. 10.1093/nar/gkab476

By:

Yu, Hongyao;
Wang, Jiajia;
Lackford, Brad;
Bennett, Brian;
Li, Jian-liang;
Hu, Guang

Publication type:

Article

Identification of a novel endogenous long non-coding RNA that inhibits selenoprotein P translation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6893, doi. 10.1093/nar/gkab498

By:

Mita, Yuichiro;
Uchida, Risa;
Yasuhara, Sayuri;
Kishi, Kohei;
Hoshi, Takayuki;
Matsuo, Yoshitaka;
Yokooji, Tadashi;
Shirakawa, Yoshino;
Toyama, Takashi;
Urano, Yasuomi;
Inada, Toshifumi;
Noguchi, Noriko;
Saito, Yoshiro

Publication type:

Article

Three-dimensional structure of a flavivirus dumbbell RNA reveals molecular details of an RNA regulator of replication.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 7122, doi. 10.1093/nar/gkab462

By:

Akiyama, Benjamin M;
Graham, Monica E;
O′Donoghue, Zoe;
Beckham, J David;
Kieft, Jeffrey S

Publication type:

Article

HP1021 is a redox switch protein identified in Helicobacter pylori.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6863, doi. 10.1093/nar/gkab440

By:

Szczepanowski, Piotr;
Noszka, Mateusz;
Żyła-Uklejewicz, Dorota;
Pikuła, Fabian;
Nowaczyk-Cieszewska, Malgorzata;
Krężel, Artur;
Stingl, Kerstin;
Zawilak-Pawlik, Anna

Publication type:

Article

Single-molecule imaging of epigenetic complexes in living cells: insights from studies on Polycomb group proteins.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6621, doi. 10.1093/nar/gkab304

By:

Brown, Kyle;
Andrianakos, Haralambos;
Ingersoll, Steven;
Ren, Xiaojun

Publication type:

Article

DnaB helicase dynamics in bacterial DNA replication resolved by single-molecule studies.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6804, doi. 10.1093/nar/gkab493

By:

Spinks, Richard R;
Spenkelink, Lisanne M;
Stratmann, Sarah A;
Xu, Zhi-Qiang;
Stamford, N Patrick J;
Brown, Susan E;
Dixon, Nicholas E;
Jergic, Slobodan;
van Oijen, Antoine M

Publication type:

Article

Structure of the mammalian adenine DNA glycosylase MUTYH: insights into the base excision repair pathway and cancer.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 7154, doi. 10.1093/nar/gkab492

By:

Nakamura, Teruya;
Okabe, Kohtaro;
Hirayama, Shogo;
Chirifu, Mami;
Ikemizu, Shinji;
Morioka, Hiroshi;
Nakabeppu, Yusaku;
Yamagata, Yuriko

Publication type:

Article

sRNA-mediated RNA processing regulates bacterial cell division.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 7035, doi. 10.1093/nar/gkab491

By:

Grützner, Julian;
Remes, Bernhard;
Eisenhardt, Katrin M H;
Scheller, Daniel;
Kretz, Jonas;
Madhugiri, Ramakanth;
McIntosh, Matthew;
Klug, Gabriele

Publication type:

Article

Matrix-screening reveals a vast potential for direct protein-protein interactions among RNA binding proteins.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6702, doi. 10.1093/nar/gkab490

By:

Lang, Benjamin;
Yang, Jae-Seong;
Garriga-Canut, Mireia;
Speroni, Silvia;
Aschern, Moritz;
Gili, Maria;
Hoffmann, Tobias;
Tartaglia, Gian Gaetano;
Maurer, Sebastian P

Publication type:

Article

Prostate cancer-associated SPOP mutations lead to genomic instability through disruption of the SPOP–HIPK2 axis.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6788, doi. 10.1093/nar/gkab489

By:

Jin, Xiaofeng;
Qing, Shi;
Li, Qian;
Zhuang, Hui;
Shen, Liliang;
Li, Jinhui;
Qi, Honggang;
Lin, Ting;
Lin, Zihan;
Wang, Jian;
Cao, Xinyi;
Yang, Jianye;
Ma, Qi;
Cong, Linghua;
Xi, Yang;
Fang, Shuai;
Meng, Xiaodan;
Gong, Zhaohui;
Ye, Meng;
Wang, Shuyun

Publication type:

Article

Insights into xanthine riboswitch structure and metal ion-mediated ligand recognition.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 7139, doi. 10.1093/nar/gkab486

By:

Xu, Xiaochen;
Egger, Michaela;
Chen, Hao;
Bartosik, Karolina;
Micura, Ronald;
Ren, Aiming

Publication type:

Article

RNase H1C collaborates with ssDNA binding proteins WHY1/3 and recombinase RecA1 to fulfill the DNA damage repair in Arabidopsis chloroplasts.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6771, doi. 10.1093/nar/gkab479

By:

Wang, Wenjie;
Li, Kuan;
Yang, Zhuo;
Hou, Quancan;
Zhao, Wei W;
Sun, Qianwen

Publication type:

Article

Upregulation of RNA cap methyltransferase RNMT drives ribosome biogenesis during T cell activation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6722, doi. 10.1093/nar/gkab465

By:

Galloway, Alison;
Kaskar, Aneesa;
Ditsova, Dimitrinka;
Atrih, Abdelmadjid;
Yoshikawa, Harunori;
Gomez-Moreira, Carolina;
Suska, Olga;
Warminski, Marcin;
Grzela, Renata;
Lamond, Angus I;
Darzynkiewicz, Edward;
Jemielity, Jacek;
Cowling, Victoria H

Publication type:

Article

Beyond small molecules: targeting G-quadruplex structures with oligonucleotides and their analogues.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6638, doi. 10.1093/nar/gkab334

By:

Cadoni, Enrico;
De Paepe, Lessandro;
Manicardi, Alex;
Madder, Annemieke

Publication type:

Article

Intermolecular dark resonance energy transfer (DRET): upgrading fluorogenic DNA sensing.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. e72, doi. 10.1093/nar/gkab237

By:

Barnoin, Guillaume;
Shaya, Janah;
Richert, Ludovic;
Le, Hoang-Ngoan;
Vincent, Steve;
Guérineau, Vincent;
Mély, Yves;
Michel, Benoît Y;
Burger, Alain

Publication type:

Article

Efficient splicing-based RNA regulators for tetracycline-inducible gene expression in human cell culture and C. elegans.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. e71, doi. 10.1093/nar/gkab233

By:

Finke, Monika;
Brecht, Dominik;
Stifel, Julia;
Gense, Karina;
Gamerdinger, Martin;
Hartig, Jörg S

Publication type:

Article

Human tRNAs with inosine 34 are essential to efficiently translate eukarya-specific low-complexity proteins.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 7011, doi. 10.1093/nar/gkab461

By:

Torres, Adrian Gabriel;
Rodríguez-Escribà, Marta;
Marcet-Houben, Marina;
Santos Vieira, Helaine Graziele;
Camacho, Noelia;
Catena, Helena;
Murillo Recio, Marina;
Rafels-Ybern, Àlbert;
Reina, Oscar;
Torres, Francisco Miguel;
Pardo-Saganta, Ana;
Gabaldón, Toni;
Novoa, Eva Maria;
Ribas de Pouplana, Lluís

Publication type:

Article

MrHAMER yields highly accurate single molecule viral sequences enabling analysis of intra-host evolution.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. e70, doi. 10.1093/nar/gkab231

By:

Gallardo, Christian M;
Wang, Shiyi;
Montiel-Garcia, Daniel J;
Little, Susan J;
Smith, Davey M;
Routh, Andrew L;
Torbett, Bruce E

Publication type:

Article

DNA molecular combing-based replication fork directionality profiling.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. e69, doi. 10.1093/nar/gkab219

By:

Blin, Marion;
Lacroix, Laurent;
Petryk, Nataliya;
Jaszczyszyn, Yan;
Chen, Chun-Long;
Hyrien, Olivier;
Le Tallec, Benoît

Publication type:

Article

Taxonomic analysis of metagenomic data with kASA.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. e68, doi. 10.1093/nar/gkab200

By:

Weging, Silvio;
Gogol-Döring, Andreas;
Grosse, Ivo

Publication type:

Article

Kinetic sequencing (k-Seq) as a massively parallel assay for ribozyme kinetics: utility and critical parameters.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. e67, doi. 10.1093/nar/gkab199

By:

Shen, Yuning;
Pressman, Abe;
Janzen, Evan;
Chen, Irene A

Publication type:

Article

Power-law behavior of transcription factor dynamics at the single-molecule level implies a continuum affinity model.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 12, p. 6605, doi. 10.1093/nar/gkab072

By:

Garcia, David A;
Fettweis, Gregory;
Presman, Diego M;
Paakinaho, Ville;
Jarzynski, Christopher;
Upadhyaya, Arpita;
Hager, Gordon L

Publication type:

Article