Works matching IS 03051048 AND DT 2021 AND VI 49 AND IP W1

Results: 82

ProteinTools: a toolkit to analyze protein structures.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W559, doi. 10.1093/nar/gkab375

By:

Ferruz, Noelia;
Schmidt, Steffen;
Höcker, Birte

Publication type:

Article

RunBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formats.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W597, doi. 10.1093/nar/gkab411

By:

Shaikh, Bilal;
Marupilla, Gnaneswara;
Wilson, Mike;
Blinov, Michael L.;
Moraru, Ion I.;
Karr, Jonathan R.

Publication type:

Article

snpXplorer: a web application to explore human SNP-associations and annotate SNP-sets.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W603, doi. 10.1093/nar/gkab410

By:

Tesi, Niccolo;
van der Lee, Sven;
Hulsman, Marc;
Holstege, Henne;
Reinders, Marcel J. T.

Publication type:

Article

ProLint: a web-based framework for the automated data analysis and visualization of lipid–protein interactions.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W544, doi. 10.1093/nar/gkab409

By:

Sejdiu, Besian I.;
Tieleman, D. Peter

Publication type:

Article

Preselector.uni-jena.de: optimize your cloning––a resource for identifying restriction enzymes for preselection reactions.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W541, doi. 10.1093/nar/gkab406

By:

Gühmann, Martin;
Reuter, Stefanie;
Hartung, Jan;
Mrowka, Ralf

Publication type:

Article

Thunor: visualization and analysis of high-throughput dose–response datasets.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W633, doi. 10.1093/nar/gkab424

By:

Lubbock, Alexander L. R.;
Harris, Leonard A.;
Quaranta, Vito;
Tyson, Darren R.;
Lopez, Carlos F.

Publication type:

Article

Editorial: the 19th annual Nucleic Acids Research web server issue 2021.

Published in:: Nucleic Acids Research, 2021, v. 49, n. W1, p. W1, doi. 10.1093/nar/gkab525
Publication type:: Article

ncFANs v2.0: an integrative platform for functional annotation of non-coding RNAs.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W459, doi. 10.1093/nar/gkab435

By:

Zhang, Yuwei;
Bu, Dechao;
Huo, Peipei;
Wang, Zhihao;
Rong, Hao;
Li, Yanguo;
Liu, Jingjia;
Ye, Meng;
Wu, Yang;
Jiang, Zheng;
Liao, Qi;
Zhao, Yi

Publication type:

Article

Voronoia 4-ever.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W685, doi. 10.1093/nar/gkab466

By:

Staritzbichler, Rene;
Ristic, Nikola;
Goede, Andrean;
Preissner, Robert;
Hildebrand, Peter W

Publication type:

Article

DGLinker: flexible knowledge-graph prediction of disease–gene associations.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W153, doi. 10.1093/nar/gkab449

By:

Hu, Jiajing;
Lepore, Rosalba;
Dobson, Richard J B;
Al-Chalabi, Ammar;
M. Bean, Daniel;
Iacoangeli, Alfredo

Publication type:

Article

KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W317, doi. 10.1093/nar/gkab447

By:

Bu, Dechao;
Luo, Haitao;
Huo, Peipei;
Wang, Zhihao;
Zhang, Shan;
He, Zihao;
Wu, Yang;
Zhao, Lianhe;
Liu, Jingjia;
Guo, Jincheng;
Fang, Shuangsang;
Cao, Wanchen;
Yi, Lan;
Zhao, Yi;
Kong, Lei

Publication type:

Article

eSkip-Finder: a machine learning-based web application and database to identify the optimal sequences of antisense oligonucleotides for exon skipping.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W193, doi. 10.1093/nar/gkab442

By:

Chiba, Shuntaro;
Lim, Kenji Rowel Q;
Sheri, Narin;
Anwar, Saeed;
Erkut, Esra;
Shah, Md Nur Ahad;
Aslesh, Tejal;
Woo, Stanley;
Sheikh, Omar;
Maruyama, Rika;
Takano, Hiroaki;
Kunitake, Katsuhiko;
Duddy, William;
Okuno, Yasushi;
Aoki, Yoshitsugu;
Yokota, Toshifumi

Publication type:

Article

DrugComb update: a more comprehensive drug sensitivity data repository and analysis portal.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W174, doi. 10.1093/nar/gkab438

By:

Zheng, Shuyu;
Aldahdooh, Jehad;
Shadbahr, Tolou;
Wang, Yinyin;
Aldahdooh, Dalal;
Bao, Jie;
Wang, Wenyu;
Tang, Jing

Publication type:

Article

CRISPRloci: comprehensive and accurate annotation of CRISPR–Cas systems.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W125, doi. 10.1093/nar/gkab456

By:

Alkhnbashi, Omer S;
Mitrofanov, Alexander;
Bonidia, Robson;
Raden, Martin;
Tran, Van Dinh;
Eggenhofer, Florian;
Shah, Shiraz A;
Öztürk, Ekrem;
Padilha, Victor A;
Sanches, Danilo S;
de Carvalho, André C P L F;
Backofen, Rolf

Publication type:

Article

GPCRsignal: webserver for analysis of the interface between G-protein–coupled receptors and their effector proteins by dynamics and mutations.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W247, doi. 10.1093/nar/gkab434

By:

Miszta, Przemysław;
Pasznik, Paweł;
Niewieczerzał, Szymon;
Jakowiecki, Jakub;
Filipek, Sławomir

Publication type:

Article

DeepFun: a deep learning sequence-based model to decipher non-coding variant effect in a tissue- and cell type-specific manner.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W131, doi. 10.1093/nar/gkab429

By:

Pei, Guangsheng;
Hu, Ruifeng;
Jia, Peilin;
Zhao, Zhongming

Publication type:

Article

MTR3D: identifying regions within protein tertiary structures under purifying selection.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W438, doi. 10.1093/nar/gkab428

By:

Silk, Michael;
Pires, Douglas E V;
Rodrigues, Carlos H M;
D'Souza, Elston N;
Olshansky, Moshe;
Thorne, Natalie;
Ascher, David B

Publication type:

Article

pegIT - a web-based design tool for prime editing.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W505, doi. 10.1093/nar/gkab427

By:

Anderson, Mads Valdemar;
Haldrup, Jakob;
Thomsen, Emil Aagaard;
Wolff, Jonas Holst;
Mikkelsen, Jacob Giehm

Publication type:

Article

Estimage: a webserver hub for the computation of methylation age.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W199, doi. 10.1093/nar/gkab426

By:

Di Lena, Pietro;
Sala, Claudia;
Nardini, Christine

Publication type:

Article

b2bTools: online predictions for protein biophysical features and their conservation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W52, doi. 10.1093/nar/gkab425

By:

Kagami, Luciano Porto;
Orlando, Gabriele;
Raimondi, Daniele;
Ancien, Francois;
Dixit, Bhawna;
Gavaldá-García, Jose;
Ramasamy, Pathmanaban;
Roca-Martínez, Joel;
Tzavella, Konstantina;
Vranken, Wim

Publication type:

Article

GalaxyHeteromer: protein heterodimer structure prediction by template-based and ab initio docking.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W237, doi. 10.1093/nar/gkab422

By:

Park, Taeyong;
Won, Jonghun;
Baek, Minkyung;
Seok, Chaok

Publication type:

Article

G2PDeep: a web-based deep-learning framework for quantitative phenotype prediction and discovery of genomic markers.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W228, doi. 10.1093/nar/gkab407

By:

Zeng, Shuai;
Mao, Ziting;
Ren, Yijie;
Wang, Duolin;
Xu, Dong;
Joshi, Trupti

Publication type:

Article

Graphery: interactive tutorials for biological network algorithms.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W257, doi. 10.1093/nar/gkab420

By:

Zeng, Heyuan;
Zhang, Jinbiao;
Preising, Gabriel A;
Rubel, Tobias;
Singh, Pramesh;
Ritz, Anna

Publication type:

Article

LipidSig: a web-based tool for lipidomic data analysis.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W336, doi. 10.1093/nar/gkab419

By:

Lin, Wen-Jen;
Shen, Pei-Chun;
Liu, Hsiu-Cheng;
Cho, Yi-Chun;
Hsu, Min-Kung;
Lin, I-Chen;
Chen, Fang-Hsin;
Yang, Juan-Cheng;
Ma, Wen-Lung;
Cheng, Wei-Chung

Publication type:

Article

GEPIA2021: integrating multiple deconvolution-based analysis into GEPIA.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W242, doi. 10.1093/nar/gkab418

By:

Li, Chenwei;
Tang, Zefang;
Zhang, Wenjie;
Ye, Zhaochen;
Liu, Fenglin

Publication type:

Article

IUPred3: prediction of protein disorder enhanced with unambiguous experimental annotation and visualization of evolutionary conservation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W297, doi. 10.1093/nar/gkab408

By:

Erdős, Gábor;
Pajkos, Mátyás;
Dosztányi, Zsuzsanna

Publication type:

Article

CPA: a web-based platform for consensus pathway analysis and interactive visualization.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W114, doi. 10.1093/nar/gkab421

By:

Nguyen, Hung;
Tran, Duc;
Galazka, Jonathan M;
Costes, Sylvain V;
Beheshti, Afshin;
Petereit, Juli;
Draghici, Sorin;
Nguyen, Tin

Publication type:

Article

Mergeomics 2.0: a web server for multi-omics data integration to elucidate disease networks and predict therapeutics.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W375, doi. 10.1093/nar/gkab405

By:

Ding, Jessica;
Blencowe, Montgomery;
Nghiem, Thien;
Ha, Sung-min;
Chen, Yen-Wei;
Li, Gaoyan;
Yang, Xia

Publication type:

Article

AnnotSV and knotAnnotSV: a web server for human structural variations annotations, ranking and analysis.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W21, doi. 10.1093/nar/gkab402

By:

Geoffroy, Véronique;
Guignard, Thomas;
Kress, Arnaud;
Gaillard, Jean-Baptiste;
Solli-Nowlan, Tor;
Schalk, Audrey;
Gatinois, Vincent;
Dollfus, Hélène;
Scheidecker, Sophie;
Muller, Jean

Publication type:

Article

BRIO: a web server for RNA sequence and structure motif scan.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W67, doi. 10.1093/nar/gkab400

By:

Guarracino, Andrea;
Pepe, Gerardo;
Ballesio, Francesco;
Adinolfi, Marta;
Pietrosanto, Marco;
Sangiovanni, Elisa;
Vitale, Ilio;
Ausiello, Gabriele;
Helmer-Citterich, Manuela

Publication type:

Article

Mechnetor: a web server for exploring protein mechanism and the functional context of genetic variants.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W366, doi. 10.1093/nar/gkab399

By:

González-Sánchez, Juan Carlos;
Ibrahim, Mustafa F R;
Leist, Ivo C;
Weise, Kyle R;
Russell, Robert B

Publication type:

Article

NetGO 2.0: improving large-scale protein function prediction with massive sequence, text, domain, family and network information.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W469, doi. 10.1093/nar/gkab398

By:

Yao, Shuwei;
You, Ronghui;
Wang, Shaojun;
Xiong, Yi;
Huang, Xiaodi;
Zhu, Shanfeng

Publication type:

Article

Aviator: a web service for monitoring the availability of web services.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W46, doi. 10.1093/nar/gkab396

By:

Fehlmann, Tobias;
Kern, Fabian;
Hirsch, Pascal;
Steinhaus, Robin;
Seelow, Dominik;
Keller, Andreas

Publication type:

Article

MyCLADE: a multi-source domain annotation server for sequence functional exploration.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W452, doi. 10.1093/nar/gkab395

By:

Vicedomini, Riccardo;
Blachon, Clémence;
Oteri, Francesco;
Carbone, Alessandra

Publication type:

Article

OmicsAnalyst: a comprehensive web-based platform for visual analytics of multi-omics data.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W476, doi. 10.1093/nar/gkab394

By:

Zhou, Guangyan;
Ewald, Jessica;
Xia, Jianguo

Publication type:

Article

MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W388, doi. 10.1093/nar/gkab382

By:

Pang, Zhiqiang;
Chong, Jasmine;
Zhou, Guangyan;
de Lima Morais, David Anderson;
Chang, Le;
Barrette, Michel;
Gauthier, Carol;
Jacques, Pierre-Étienne;
Li, Shuzhao;
Xia, Jianguo

Publication type:

Article

DomainViz: intuitive visualization of consensus domain distributions across groups of proteins.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W169, doi. 10.1093/nar/gkab391

By:

Schläpfer, Pascal;
Mehta, Devang;
Ridderikhoff, Cameron;
Uhrig, R Glen

Publication type:

Article

LigAdvisor: a versatile and user-friendly web-platform for drug design.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W326, doi. 10.1093/nar/gkab385

By:

Pinzi, Luca;
Tinivella, Annachiara;
Gagliardelli, Luca;
Beneventano, Domenico;
Rastelli, Giulio

Publication type:

Article

TIMEOR: a web-based tool to uncover temporal regulatory mechanisms from multi-omics data.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W641, doi. 10.1093/nar/gkab384

By:

Conard, Ashley Mae;
Goodman, Nathaniel;
Hu, Yanhui;
Perrimon, Norbert;
Singh, Ritambhara;
Lawrence, Charles;
Larschan, Erica

Publication type:

Article

PlantDeepSEA, a deep learning-based web service to predict the regulatory effects of genomic variants in plants.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W523, doi. 10.1093/nar/gkab383

By:

Zhao, Hu;
Tu, Zhuo;
Liu, Yinmeng;
Zong, Zhanxiang;
Li, Jiacheng;
Liu, Hao;
Xiong, Feng;
Zhan, Jinling;
Hu, Xuehai;
Xie, Weibo

Publication type:

Article

catRAPID omics v2.0: going deeper and wider in the prediction of protein–RNA interactions.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W72, doi. 10.1093/nar/gkab393

By:

Armaos, Alexandros;
Colantoni, Alessio;
Proietti, Gabriele;
Rupert, Jakob;
Tartaglia, Gian Gaetano

Publication type:

Article

Amino Acid Interactions (INTAA) web server v2.0: a single service for computation of energetics and conservation in biomolecular 3D structures.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W15, doi. 10.1093/nar/gkab377

By:

Vymětal, Jiří;
Jakubec, David;
Galgonek, Jakub;
Vondrášek, Jiří

Publication type:

Article

pLannotate: engineered plasmid annotation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W516, doi. 10.1093/nar/gkab374

By:

McGuffie, Matthew J;
Barrick, Jeffrey E

Publication type:

Article

DeepGOWeb: fast and accurate protein function prediction on the (Semantic) Web.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W140, doi. 10.1093/nar/gkab373

By:

Kulmanov, Maxat;
Zhapa-Camacho, Fernando;
Hoehndorf, Robert

Publication type:

Article

PERCEPTRON: an open-source GPU-accelerated proteoform identification pipeline for top-down proteomics.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W510, doi. 10.1093/nar/gkab368

By:

Khalid, Muhammad Farhan;
Iman, Kanzal;
Ghafoor, Amna;
Saboor, Mujtaba;
Ali, Ahsan;
Muaz, Urwa;
Basharat, Abdul Rehman;
Tahir, Taha;
Abubakar, Muhammad;
Akhter, Momina Amer;
Nabi, Waqar;
Vanderbauwhede, Wim;
Ahmad, Fayyaz;
Wajid, Bilal;
Chaudhary, Safee Ullah

Publication type:

Article

eVITTA: a web-based visualization and inference toolbox for transcriptome analysis.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W207, doi. 10.1093/nar/gkab366

By:

Cheng, Xuanjin;
Yan, Junran;
Liu, Yongxing;
Wang, Jiahe;
Taubert, Stefan

Publication type:

Article

DeepRefiner: high-accuracy protein structure refinement by deep network calibration.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W147, doi. 10.1093/nar/gkab361

By:

Shuvo, Md Hossain;
Gulfam, Muhammad;
Bhattacharya, Debswapna

Publication type:

Article

CNVxplorer: a web tool to assist clinical interpretation of CNVs in rare disease patients.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W93, doi. 10.1093/nar/gkab347

By:

Requena, Francisco;
Abdallah, Hamza Hadj;
García, Alejandro;
Nitschké, Patrick;
Romana, Sergi;
Malan, Valérie;
Rausell, Antonio

Publication type:

Article

KEA3: improved kinase enrichment analysis via data integration.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W304, doi. 10.1093/nar/gkab359

By:

Kuleshov, Maxim V;
Xie, Zhuorui;
London, Alexandra B K;
Yang, Janice;
Evangelista, John Erol;
Lachmann, Alexander;
Shu, Ingrid;
Torre, Denis;
Ma'ayan, Avi

Publication type:

Article

EDGAR3.0: comparative genomics and phylogenomics on a scalable infrastructure.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W185, doi. 10.1093/nar/gkab341

By:

Dieckmann, Marius Alfred;
Beyvers, Sebastian;
Nkouamedjo-Fankep, Rudel Christian;
Hanel, Patrick Harald Georg;
Jelonek, Lukas;
Blom, Jochen;
Goesmann, Alexander

Publication type:

Article