Works matching IS 03051048 AND DT 2021 AND VI 49 AND IP 8

Results: 37

Rational engineering of a modular bacterial CRISPR–Cas activation platform with expanded target range.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4793, doi. 10.1093/nar/gkab211

By:

Villegas Kcam, Maria Claudia;
Tsong, Annette J.;
Chappell, James

Publication type:

Article

Water structure around a left-handed Z-DNA fragment analyzed by cryo neutron crystallography.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4782, doi. 10.1093/nar/gkab264

By:

Harp, Joel M.;
Coates, Leighton;
Sullivan, Brendan;
Egli, Martin

Publication type:

Article

Crystal structures of N-terminally truncated telomerase reverse transcriptase from fungi.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4768, doi. 10.1093/nar/gkab261

By:

Liu-Tao Zhai;
Rety, Stephane;
Wei-Fei Chen;
Ze-Yu Song;
Auguin, Daniel;
Bo Sun;
Shuo-Xing Dou;
Xu-Guang Xi

Publication type:

Article

Nucleosome composition regulates the histone H3 tail conformational ensemble and accessibility.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4750, doi. 10.1093/nar/gkab246

By:

Morrison, Emma A.;
Baweja, Lokesh;
Poirier, Michael G.;
Wereszczynski, Jeff;
Musselman, Catherine A.

Publication type:

Article

Molecular mechanism of RNase R substrate sensitivity for RNA ribose methylation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4738, doi. 10.1093/nar/gkab202

By:

Abula, Abudureyimu;
Xiaona Li;
Xing Quan;
Tingting Yang;
Yue Liu;
Hangtian Guo;
Tinghan Li;
Xiaoyun Ji

Publication type:

Article

Crystal structure and functional implication of a bacterial cyclic AMP–AMP–GMP synthetase.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4725, doi. 10.1093/nar/gkab165

By:

Tzu-Ping Ko;
Yu-Chuan Wang;
Chia-Ling Tsai;
Chia-Shin Yang;
Mei-Hui Hou;
Yeh Chen

Publication type:

Article

Global RNA profiles show target selectivity and physiological effects of peptide-delivered antisense antibiotics.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4705, doi. 10.1093/nar/gkab242

By:

Popella, Linda;
Jung, Jakob;
Popova, Kristina;
Ðurica-Mitić, Svetlana;
Barquist, Lars;
Vogel, Jörg

Publication type:

Article

Ablation of Mto1 in zebrafish exhibited hypertrophic cardiomyopathy manifested by mitochondrion RNA maturation deficiency.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4689, doi. 10.1093/nar/gkab228

By:

Qinghai Zhang;
Xiao He;
Shihao Yao;
Tianxiang Lin;
Luwen Zhang;
Danni Chen;
Chao Chen;
Qingxian Yang;
Feng Li;
Yi-Min Zhu;
Min-Xin Guan

Publication type:

Article

A purine loop and the primer binding site are critical for the selective encapsidation of mouse mammary tumor virus genomic RNA by Pr77<sup>Gag</sup>.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4668, doi. 10.1093/nar/gkab223

By:

Chameettachal, Akhil;
Vivet-Boudou, Valérie;
Nagoor Pitchai, Fathima Nuzra;
Pillai, Vineeta N.;
Ali, Lizna Mohamed;
Krishnan, Anjana;
Bernacchi, Serena;
Mustafa, Farah;
Marquet, Roland;
Rizvi, Tahir A.

Publication type:

Article

Coevolution of ribosomal RNA expansion segment 7<sup>L</sup> and assembly factor Noc2p specializes the ribosome biogenesis pathway between Saccharomyces cerevisiae and Candida albicans.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4655, doi. 10.1093/nar/gkab218

By:

Xiangxiang Wang;
Zhiyong Yue;
Feifei Xu;
Sufang Wang;
Xin Hu;
Junbiao Dai;
Guanghou Zhao

Publication type:

Article

Nearest-neighbour transition-state analysis for nucleic acid kinetics.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4574, doi. 10.1093/nar/gkab205

By:

Rejali, Nick A.;
Ye, Felix D.;
Zuiter, Aisha M.;
Keller, Caroline C.;
Wittwer, Carl T.

Publication type:

Article

Eukaryote specific RNA and protein features facilitate assembly and catalysis of H/ACA snoRNPs.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4629, doi. 10.1093/nar/gkab177

By:

Trucks, Sven;
Hanspach, Gerd;
Hengesbach, Martin

Publication type:

Article

Histone deacetylases control lysine acetylation of ribosomal proteins in rice.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4613, doi. 10.1093/nar/gkab244

By:

Qiutao Xu;
Qian Liu;
Zhengting Chen;
Yaping Yue;
Yuan Liu;
Yu Zhao;
Dao-Xiu Zhou

Publication type:

Article

DNA polymerase D temporarily connects primase to the CMG-like helicase before interacting with proliferating cell nuclear antigen.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4599, doi. 10.1093/nar/gkab243

By:

Keisuke Oki;
Takeshi Yamagami;
Mariko Nagata;
Kouta Mayanagi;
Tsuyoshi Shirai;
Naruhiko Adachi;
Tomoyuki Numata;
Sonoko Ishino;
Yoshizumi Ishino

Publication type:

Article

The rDNA is biomolecular condensate formed by polymer–polymer phase separation and is sequestered in the nucleolus by transcription and R-loops.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4586, doi. 10.1093/nar/gkab229

By:

Lawrimore, Josh;
Kolbin, Daniel;
Stanton, John;
Khan, Muznah;
de Larminat, Solenn C.;
Lawrimore, Colleen;
Yeh, Elaine;
Bloom, Kerry

Publication type:

Article

Escherichia coli RNase E can efficiently replace RNase Y in Bacillus subtilis.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4643, doi. 10.1093/nar/gkab216

By:

Laalami, Soumaya;
Cavaiuolo, Marina;
Roque, Sylvain;
Chagneau, Carine;
Putzer, Harald

Publication type:

Article

Nanomechanics of G-quadruplexes within the promoter of the KIT oncogene.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4564, doi. 10.1093/nar/gkab079

By:

Buglione, Enrico;
Salerno, Domenico;
Marrano, Claudia Adriana;
Cassina, Valeria;
Vesco, Guglielmo;
Nardo, Luca;
Dacasto, Mauro;
Rigo, Riccardo;
Sissi, Claudia;
Mantegazza, Francesco

Publication type:

Article

The HIV-1 nucleocapsid chaperone protein forms locally compacted globules on long double-stranded DNA.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4550, doi. 10.1093/nar/gkab236

By:

Kai Jiang;
Humbert, Nicolas;
Sriram, K. K.;
Rouzina, Ioulia;
Mely, Yves;
Westerlund, Fredrik

Publication type:

Article

Nse5/6 is a negative regulator of the ATPase activity of the Smc5/6 complex.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4534, doi. 10.1093/nar/gkab234

By:

Hallett, Stephen T.;
Schellenberger, Pascale;
Lihong Zhou;
Beuron, Fabienne;
Morris, Ed;
Murray, Johanne M.;
Oliver, Antony W.

Publication type:

Article

A conserved BAH module within mammalian BAHD1 connects H3K27me3 to Polycomb gene silencing.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4441, doi. 10.1093/nar/gkab210

By:

Huitao Fan;
Yiran Guo;
Yi-Hsuan Tsai;
Storey, Aaron J.;
Kim, Arum;
Gong, Weida;
Edmondson, Ricky D.;
Mackintosh, Samuel G.;
Haitao Li;
Byrum, Stephanie D.;
Tackett, Alan J.;
Ling Cai;
Gang Greg Wang

Publication type:

Article

Mechanism of REST/NRSF regulation of clustered protocadherin α genes.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4506, doi. 10.1093/nar/gkab248

By:

Yuanxiao Tang;
Zhilian Jia;
Honglin Xu;
Lin-tai Da;
Qiang Wu

Publication type:

Article

A model of active transcription hubs that unifies the roles of active promoters and enhancers.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4493, doi. 10.1093/nar/gkab235

By:

Zhu, Iris;
Wei Song;
Ovcharenko, Ivan;
Landsman, David

Publication type:

Article

Myod1 and GR coordinate myofiber-specific transcriptional enhancers.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4472, doi. 10.1093/nar/gkab226

By:

Rovito, Daniela;
Rerra, Anna-Isavella;
Ueberschlag-Pitiot, Vanessa;
Joshi, Shilpy;
Karasu, Nezih;
Dacleu-Siewe, Vanessa;
Rayana, Khalil Ben;
Ghaibour, Kamar;
Parisotto, Maxime;
Ferry, Arnaud;
Jelinsky, Scott A.;
Laverny, Gilles;
Klaholz, Bruno P.;
Sexton, Tom;
Billas, Isabelle M. L.;
Duteil, Delphine;
Metzger, Daniel

Publication type:

Article

Monocyte chemoattractant protein-induced protein 1 directly degrades viral miRNAs with a specific motif and inhibits KSHV infection.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4456, doi. 10.1093/nar/gkab215

By:

Kook, Insun;
Ziegelbauer, Joseph M.

Publication type:

Article

The Pif1 helicase is actively inhibited during meiotic recombination which restrains gene conversion tract length.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4522, doi. 10.1093/nar/gkab232

By:

Vernekar, Dipti Vinayak;
Reginato, Giordano;
Adam, Céline;
Ranjha, Lepakshi;
Dingli, Florent;
Marsolier, Marie-Claude;
Loew, Damarys;
Guérois, Raphaël;
Llorente, Bertrand;
Cejka, Petr;
Borde, Valérie

Publication type:

Article

Bimodal regulation of the PRC2 complex by USP7 underlies tumorigenesis.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4421, doi. 10.1093/nar/gkab209

By:

Dongxue Su;
Wenjuan Wang;
Yongqiang Hou;
Liyong Wang;
Xianfu Yi;
Cheng Cao;
Yuejiao Wang;
Huan Gao;
Yue Wang;
Chao Yang;
Beibei Liu;
Xing Chen;
Xiaodi Wu;
Jiajing Wu;
Dong Yan;
Shuqi Wei;
Lulu Han;
Shumeng Liu;
Qian Wang;
Lei Shi

Publication type:

Article

Conserved DNA sequence features underlie pervasive RNA polymerase pausing.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4402, doi. 10.1093/nar/gkab208

By:

Gajos, Martyna;
Jasnovidova, Olga;
van Bömmel, Alena;
Freier, Susanne;
Vingron, Martin;
Mayer, Andreas

Publication type:

Article

A phage satellite tunes inducing phage gene expression using a domesticated endonuclease to balance inhibition and virion hijacking.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4386, doi. 10.1093/nar/gkab207

By:

Netter, Zoe;
Boyd, Caroline M.;
Silvas, Tania V.;
Seed, Kimberley D.

Publication type:

Article

Systematic identification of A-to-I RNA editing in zebrafish development and adult organs.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4325, doi. 10.1093/nar/gkab247

By:

Buchumenski, Ilana;
Holler, Karoline;
Appelbaum, Lior;
Eisenberg, Eli;
Junker, Jan Philipp;
Levanon, Erez Y.

Publication type:

Article

Impact of 3-deazapurine nucleobases on RNA properties.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4281, doi. 10.1093/nar/gkab256

By:

Bereiter, Raphael;
Himmelstoß, Maximilian;
Renard, Eva;
Mairhofer, Elisabeth;
Egger, Michaela;
Breuker, Kathrin;
Kreutz, Christoph;
Ennifar, Eric;
Micura, Ronald

Publication type:

Article

Dynamically elongated associative toehold for tuning DNA circuit kinetics and thermodynamics.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4258, doi. 10.1093/nar/gkab212

By:

Ang, Yan Shan;
Yung, Lin-Yue Lanry

Publication type:

Article

SIRT3 consolidates heterochromatin and counteracts senescence.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4203, doi. 10.1093/nar/gkab161

By:

Diao, Zhiqing;
Ji, Qianzhao;
Wu, Zeming;
Zhang, Weiqi;
Cai, Yusheng;
Wang, Zehua;
Hu, Jianli;
Liu, Zunpeng;
Wang, Qiaoran;
Bi, Shijia;
Huang, Daoyuan;
Ji, Zhejun;
Liu, Guang-Hui;
Wang, Si;
Song, Moshi;
Qu, Jing

Publication type:

Article

Single-molecule insight into stalled replication fork rescue in Escherichia coli.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4220, doi. 10.1093/nar/gkab142

By:

Bianco, Piero R;
Lu, Yue

Publication type:

Article

A functional LSD1 coregulator screen reveals a novel transcriptional regulatory cascade connecting R-loop homeostasis with epigenetic regulation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4350, doi. 10.1093/nar/gkab180

By:

Pinter, Sabine;
Knodel, Franziska;
Choudalakis, Michel;
Schnee, Philipp;
Kroll, Carolin;
Fuchs, Marina;
Broehm, Alexander;
Weirich, Sara;
Roth, Mareike;
Eisler, Stephan A.;
Zuber, Johannes;
Jeltsch, Albert;
Rathert, Philipp

Publication type:

Article

Characteristic chemical probing patterns of loop motifs improve prediction accuracy of RNA secondary structures.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4294, doi. 10.1093/nar/gkab250

By:

Cao, Jingyi;
Xue, Yi

Publication type:

Article

The effect of flanking bases on direct and triplet sensitized cyclobutane pyrimidine dimer formation in DNA depends on the dipyrimidine, wavelength and the photosensitizer.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4266, doi. 10.1093/nar/gkab214

By:

Lu, Chen;
Gutierrez-Bayona, Natalia Eugenia;
Taylor, John-Stephen

Publication type:

Article

Genome-wide characterization of human minisatellite VNTRs: population-specific alleles and gene expression differences.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 8, p. 4308, doi. 10.1093/nar/gkab224

By:

Eslami Rasekh, Marzieh;
Hernández, Yözen;
Drinan, Samantha D;
Fuxman Bass, Juan I;
Benson, Gary

Publication type:

Article