Works matching IS 03051048 AND DT 2022 AND VI 50 AND IP 5

Results: 50

Correction to 'High mobility group AT-hook 1 (HMGA1) is an important positive regulator of hepatitis B virus (HBV) that is reciprocally upregulated by HBV X protein'.

Published in:: Nucleic Acids Research, 2022, v. 50, n. 5, p. 2996, doi. 10.1093/nar/gkac157
Publication type:: Article

Correction to 'Mechanisms of Cre recombinase synaptic complex assembly and activation illuminated by Cryo-EM'.

Published in:: Nucleic Acids Research, 2022, v. 50, n. 5, p. 2995, doi. 10.1093/nar/gkac149
Publication type:: Article

Correction to 'An ultra-high affinity ligand of HIV-1 TAR reveals the RNA structure recognized by P-TEFb'.

Published in:: Nucleic Acids Research, 2022, v. 50, n. 5, p. 2994, doi. 10.1093/nar/gkac127
Publication type:: Article

G-quadruplexes in helminth parasites.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2719, doi. 10.1093/nar/gkac129

By:

Cantara, Alessio;
Luo, Yu;
Dobrovolná, Michaela;
Bohalova, Natalia;
Fojta, Miroslav;
Verga, Daniela;
Guittat, Lionel;
Cucchiarini, Anne;
Savrimoutou, Solène;
Häberli, Cécile;
Guillon, Jean;
Keiser, Jennifer;
Brázda, Václav;
Mergny, Jean Louis

Publication type:

Article

HnRNP D activates production of HPV16 E1 and E6 mRNAs by promoting intron retention.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2782, doi. 10.1093/nar/gkac132

By:

Cui, Xiaoxu;
Hao, Chengyu;
Gong, Lijing;
Kajitani, Naoko;
Schwartz, Stefan

Publication type:

Article

GREEN-DB: a framework for the annotation and prioritization of non-coding regulatory variants from whole-genome sequencing data.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2522, doi. 10.1093/nar/gkac130

By:

Giacopuzzi, Edoardo;
Popitsch, Niko;
Taylor, Jenny C

Publication type:

Article

Characterizing mobile element insertions in 5675 genomes.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2493, doi. 10.1093/nar/gkac128

By:

Niu, Yiwei;
Teng, Xueyi;
Zhou, Honghong;
Shi, Yirong;
Li, Yanyan;
Tang, Yiheng;
Zhang, Peng;
Luo, Huaxia;
Kang, Quan;
Xu, Tao;
He, Shunmin

Publication type:

Article

Small molecule targeting CELF1 RNA-binding activity to control HSC activation and liver fibrosis.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2440, doi. 10.1093/nar/gkac139

By:

Tan, Yang;
Sun, Xueqing;
Xu, Yizhu;
Tang, Bingjie;
Xu, Shuaiqi;
Lu, Dong;
Ye, Yan;
Luo, Xiaomin;
Diao, Xu;
Li, Fulong;
Wang, Tianyi;
Chen, Jiayu;
Xu, Qiang;
Wu, Xingxin

Publication type:

Article

Correction to 'Ectopic expression of RNF168 and 53BP1 increases mutagenic but not physiological non-homologous end joining'.

Published in:: Nucleic Acids Research, 2022, v. 50, n. 5, p. 2991, doi. 10.1093/nar/gkac126
Publication type:: Article

Correction to 'SwissBioisostere 2021: updated structural, bioactivity and physicochemical data delivered by a reshaped web interface'.

Published in:: Nucleic Acids Research, 2022, v. 50, n. 5, p. 2990, doi. 10.1093/nar/gkac125
Publication type:: Article

CMTR1 is recruited to transcription start sites and promotes ribosomal protein and histone gene expression in embryonic stem cells.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2905, doi. 10.1093/nar/gkac122

By:

Liang, Shang;
Silva, Joana C;
Suska, Olga;
Lukoszek, Radoslaw;
Almohammed, Rajaei;
Cowling, Victoria H

Publication type:

Article

SYMBIOSIS: synthetic manipulable biobricks via orthogonal serine integrase systems.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2973, doi. 10.1093/nar/gkac124

By:

Ba, Fang;
Liu, Yushi;
Liu, Wan-Qiu;
Tian, Xintong;
Li, Jian

Publication type:

Article

CRISPR-iPAS: a novel dCAS13-based method for alternative polyadenylation interference.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. e26, doi. 10.1093/nar/gkac108

By:

Tian, Shuye;
Zhang, Bin;
He, Yuhao;
Sun, Zhiyuan;
Li, Jun;
Li, Yisheng;
Yi, Hongyang;
Zhao, Yan;
Zou, Xudong;
Li, Yunfei;
Cui, Huanhuan;
Fang, Liang;
Gao, Xin;
Hu, Yuhui;
Chen, Wei

Publication type:

Article

Virus-specific editing identification approach reveals the landscape of A-to-I editing and its impacts on SARS-CoV-2 characteristics and evolution.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2509, doi. 10.1093/nar/gkac120

By:

Song, Yulong;
He, Xiuju;
Yang, Wenbing;
Wu, Yaoxing;
Cui, Jun;
Tang, Tian;
Zhang, Rui

Publication type:

Article

Correction to 'A Cas6-based RNA tracking platform functioning in a fluorescence-activation mode'.

Published in:: Nucleic Acids Research, 2022, v. 50, n. 5, p. 2987, doi. 10.1093/nar/gkac111
Publication type:: Article

Correction to 'Improving CRISPR–Cas specificity with chemical modifications in single-guide RNAs'.

Published in:: Nucleic Acids Research, 2022, v. 50, n. 5, p. 2986, doi. 10.1093/nar/gkac110
Publication type:: Article

transient Spt4-Spt5 complex as an upstream regulator of non-coding RNAs during development.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2603, doi. 10.1093/nar/gkac106

By:

Owsian, Dawid;
Gruchota, Julita;
Arnaiz, Olivier;
Nowak, Jacek K

Publication type:

Article

Extended sister-chromosome catenation leads to massive reorganization of the E. coli genome.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2635, doi. 10.1093/nar/gkac105

By:

Conin, Brenna;
Billault-Chaumartin, Ingrid;
El Sayyed, Hafez;
Quenech'Du, Nicole;
Cockram, Charlotte;
Koszul, Romain;
Espéli, Olivier

Publication type:

Article

AT-hook peptides bind the major and minor groove of AT-rich DNA duplexes.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2431, doi. 10.1093/nar/gkac115

By:

Garabedian, Alyssa;
Jeanne Dit Fouque, Kevin;
Chapagain, Prem P;
Leng, Fenfei;
Fernandez-Lima, Francisco

Publication type:

Article

acetyltransferase p300 is recruited in trans to multiple enhancer sites by lncSmad7.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2587, doi. 10.1093/nar/gkac083

By:

Maldotti, Mara;
Lauria, Andrea;
Anselmi, Francesca;
Molineris, Ivan;
Tamburrini, Annalaura;
Meng, Guohua;
Polignano, Isabelle Laurence;
Scrivano, Mirko Giuseppe;
Campestre, Fabiola;
Simon, Lisa Marie;
Rapelli, Stefania;
Morandi, Edoardo;
Incarnato, Danny;
Oliviero, Salvatore

Publication type:

Article

Mechanisms of mitochondrial promoter recognition in humans and other mammalian species.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2765, doi. 10.1093/nar/gkac103

By:

Zamudio-Ochoa, Angelica;
Morozov, Yaroslav I;
Sarfallah, Azadeh;
Anikin, Michael;
Temiakov, Dmitry

Publication type:

Article

Non-equilibrium structural dynamics of supercoiled DNA plasmids exhibits asymmetrical relaxation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2754, doi. 10.1093/nar/gkac101

By:

Shaheen, Cynthia;
Hastie, Cameron;
Metera, Kimberly;
Scott, Shane;
Zhang, Zhi;
Chen, Sitong;
Gu, Gracia;
Weber, Lisa;
Munsky, Brian;
Kouzine, Fedor;
Levens, David;
Benham, Craig;
Leslie, Sabrina

Publication type:

Article

Key sequence features of CRISPR RNA for dual-guide CRISPR-Cas9 ribonucleoprotein complexes assembled with wild-type or HiFi Cas9.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2854, doi. 10.1093/nar/gkac100

By:

Okada, Keita;
Aoki, Kanae;
Tabei, Teruyuki;
Sugio, Kota;
Imai, Katsunori;
Bonkohara, Yuki;
Kamachi, Yusuke

Publication type:

Article

Discovery of potent and versatile CRISPR–Cas9 inhibitors engineered for chemically controllable genome editing.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2836, doi. 10.1093/nar/gkac099

By:

Song, Guoxu;
Zhang, Fei;
Tian, Chunhong;
Gao, Xing;
Zhu, Xiaoxiao;
Fan, Dongdong;
Tian, Yong

Publication type:

Article

Persistent DNA damage associated with ATM kinase deficiency promotes microglial dysfunction.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2700, doi. 10.1093/nar/gkac104

By:

Bourseguin, Julie;
Cheng, Wen;
Talbot, Emily;
Hardy, Liana;
Lai, Jenny;
Jeffries, Ailsa M;
Lodato, Michael A;
Lee, Eunjung Alice;
Khoronenkova, Svetlana V

Publication type:

Article

interplay of supercoiling and thymine dimers in DNA.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2480, doi. 10.1093/nar/gkac082

By:

Lim, Wilber;
Randisi, Ferdinando;
Doye, Jonathan P K;
Louis, Ard A

Publication type:

Article

Engineered Sleeping Beauty transposase redirects transposon integration away from genes.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2807, doi. 10.1093/nar/gkac092

By:

Miskey, Csaba;
Kesselring, Lisa;
Querques, Irma;
Abrusán, György;
Barabas, Orsolya;
Ivics, Zoltán

Publication type:

Article

intrinsically disordered TSSC4 protein acts as a helicase inhibitor, placeholder and multi-interaction coordinator during snRNP assembly and recycling.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2938, doi. 10.1093/nar/gkac087

By:

Bergfort, Alexandra;
Hilal, Tarek;
Kuropka, Benno;
Ilik, İbrahim Avşar;
Weber, Gert;
Aktaş, Tuğçe;
Freund, Christian;
Wahl, Markus C

Publication type:

Article

Base excision repair system targeting DNA adducts of trioxacarcin/LL-D49194 antibiotics for self-resistance.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2417, doi. 10.1093/nar/gkac085

By:

Chen, Xiaorong;
Bradley, Noah P;
Lu, Wei;
Wahl, Katherine L;
Zhang, Mei;
Yuan, Hua;
Hou, Xian-Feng;
Eichman, Brandt F;
Tang, Gong-Li

Publication type:

Article

Positive supercoiling favors transcription elongation through lac repressor-mediated DNA loops.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2826, doi. 10.1093/nar/gkac093

By:

Xu, Wenxuan;
Yan, Yan;
Artsimovitch, Irina;
Dunlap, David;
Finzi, Laura

Publication type:

Article

first crystal structures of hybrid and parallel four-tetrad intramolecular G-quadruplexes.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2959, doi. 10.1093/nar/gkac091

By:

Beseiso, Dana;
Chen, Erin V;
McCarthy, Sawyer E;
Martin, Kailey N;
Gallagher, Elizabeth P;
Miao, Joanne;
Yatsunyk, Liliya A

Publication type:

Article

Structural characterization of the ANTAR antiterminator domain bound to RNA.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2889, doi. 10.1093/nar/gkac074

By:

Walshe, James L;
Siddiquee, Rezwan;
Patel, Karishma;
Ataide, Sandro F

Publication type:

Article

NBS1-CtIP–mediated DNA end resection suppresses cGAS binding to micronuclei.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2681, doi. 10.1093/nar/gkac079

By:

Abdisalaam, Salim;
Mukherjee, Shibani;
Bhattacharya, Souparno;
Kumari, Sharda;
Sinha, Debapriya;
Ortega, Janice;
Li, Guo-Min;
Sadek, Hesham A;
Krishnan, Sunil;
Asaithamby, Aroumougame

Publication type:

Article

H3K36 methylation and DNA-binding both promote Ioc4 recruitment and Isw1b remodeler function.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2549, doi. 10.1093/nar/gkac077

By:

Li, Jian;
Bergmann, Lena;
Rafael de Almeida, Andreia;
Webb, Kimberly M;
Gogol, Madelaine M;
Voigt, Philipp;
Liu, Yingfang;
Liang, Huanhuan;
Smolle, Michaela M

Publication type:

Article

Genome-wide RNAi screen identifies novel players in human 60S subunit biogenesis including key enzymes of polyamine metabolism.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2872, doi. 10.1093/nar/gkac072

By:

Dörner, Kerstin;
Badertscher, Lukas;
Horváth, Bianka;
Hollandi, Réka;
Molnár, Csaba;
Fuhrer, Tobias;
Meier, Roger;
Sárazová, Marie;
van den Heuvel, Jasmin;
Zamboni, Nicola;
Horvath, Peter;
Kutay, Ulrike

Publication type:

Article

SLX4 dampens MutSα-dependent mismatch repair.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2667, doi. 10.1093/nar/gkac075

By:

Guervilly, Jean-Hugues;
Blin, Marion;
Laureti, Luisa;
Baudelet, Emilie;
Audebert, Stéphane;
Gaillard, Pierre-Henri

Publication type:

Article

Transcriptomic and genomic studies classify NKL54 as a histone deacetylase inhibitor with indirect influence on MEF2-dependent transcription.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2566, doi. 10.1093/nar/gkac081

By:

Minisini, Martina;
Di Giorgio, Eros;
Kerschbamer, Emanuela;
Dalla, Emiliano;
Faggiani, Massimo;
Franforte, Elisa;
Meyer-Almes, Franz-Josef;
Ragno, Rino;
Antonini, Lorenzo;
Mai, Antonello;
Fiorentino, Francesco;
Rotili, Dante;
Chinellato, Monica;
Perin, Stefano;
Cendron, Laura;
Weichenberger, Christian X;
Angelini, Alessandro;
Brancolini, Claudio

Publication type:

Article

RAD51 protects against nonconservative DNA double-strand break repair through a nonenzymatic function.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2651, doi. 10.1093/nar/gkac073

By:

So, Ayeong;
Dardillac, Elodie;
Muhammad, Ali;
Chailleux, Catherine;
Sesma-Sanz, Laura;
Ragu, Sandrine;
Le Cam, Eric;
Canitrot, Yvan;
Masson, Jean Yves;
Dupaigne, Pauline;
Lopez, Bernard S;
Guirouilh-Barbat, Josée

Publication type:

Article

Drop-off-reinitiation triggered by EF-G-driven mistranslocation and its alleviation by EF-P.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2736, doi. 10.1093/nar/gkac068

By:

Tajima, Kenya;
Katoh, Takayuki;
Suga, Hiroaki

Publication type:

Article

GCAT|Panel, a comprehensive structural variant haplotype map of the Iberian population from high-coverage whole-genome sequencing.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2464, doi. 10.1093/nar/gkac076

By:

Valls-Margarit, Jordi;
Galván-Femenía, Iván;
Matías-Sánchez, Daniel;
Blay, Natalia;
Puiggròs, Montserrat;
Carreras, Anna;
Salvoro, Cecilia;
Cortés, Beatriz;
Amela, Ramon;
Farre, Xavier;
Lerga-Jaso, Jon;
Puig, Marta;
Sánchez-Herrero, Jose Francisco;
Moreno, Victor;
Perucho, Manuel;
Sumoy, Lauro;
Armengol, Lluís;
Delaneau, Olivier;
Cáceres, Mario;
de Cid, Rafael

Publication type:

Article

Does rapid sequence divergence preclude RNA structure conservation in vertebrates?

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2452, doi. 10.1093/nar/gkac067

By:

Seemann, Stefan E;
Mirza, Aashiq H;
Bang-Berthelsen, Claus H;
Garde, Christian;
Christensen-Dalsgaard, Mikkel;
Workman, Christopher T;
Pociot, Flemming;
Tommerup, Niels;
Gorodkin, Jan;
Ruzzo, Walter L

Publication type:

Article

Usage of the H3 variants during the S-phase of the cell cycle in Physarum polycephalum.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2536, doi. 10.1093/nar/gkac060

By:

Thiriet, Christophe

Publication type:

Article

Yeast Ssd1 is a non-enzymatic member of the RNase II family with an alternative RNA recognition site.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2923, doi. 10.1093/nar/gkab615

By:

Bayne, Rosemary A;
Jayachandran, Uma;
Kasprowicz, Aleksandra;
Bresson, Stefan;
Tollervey, David;
Wallace, Edward W J;
Cook, Atlanta G

Publication type:

Article

CRISPRpas: programmable regulation of alternative polyadenylation by dCas9.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. e25, doi. 10.1093/nar/gkab519

By:

Shin, Jihae;
Ding, Qingbao;
Wang, Luyang;
Cui, Yange;
Baljinnyam, Erdene;
Guvenek, Aysegul;
Tian, Bin

Publication type:

Article

Fractal construction of constrained code words for DNA storage systems.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. e30, doi. 10.1093/nar/gkab1209

By:

Löchel, Hannah F;
Welzel, Marius;
Hattab, Georges;
Hauschild, Anne-Christin;
Heider, Dominik

Publication type:

Article

Identification and classification of reverse transcriptases in bacterial genomes and metagenomes.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. e29, doi. 10.1093/nar/gkab1207

By:

Sharifi, Fatemeh;
Ye, Yuzhen

Publication type:

Article

Grouped-seq for integrated phenotypic and transcriptomic screening of patient-derived tumor organoids.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. e28, doi. 10.1093/nar/gkab1201

By:

Wu, Yushuai;
Li, Kaiyi;
Li, Yaqian;
Sun, Tao;
Liu, Chang;
Dong, Chunhui;
Zhao, Tian;
Tang, Decong;
Chen, Xiaojie;
Chen, Xiaofang;
Liu, Peng

Publication type:

Article

Interpretation of network-based integration from multi-omics longitudinal data.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. e27, doi. 10.1093/nar/gkab1200

By:

Bodein, Antoine;
Scott-Boyer, Marie-Pier;
Perin, Olivier;
Lê Cao, Kim-Anh;
Droit, Arnaud

Publication type:

Article

Sensory neuron transcriptomes reveal complex neuron-specific function and regulation of mec-2/Stomatin splicing.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2401, doi. 10.1093/nar/gkab1134

By:

Liang, Xiaoyu;
Calovich-Benne, Canyon;
Norris, Adam

Publication type:

Article

MukB-topoisomerase IV interaction mutually suppresses their catalytic activities.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 5, p. 2621, doi. 10.1093/nar/gkab1027

By:

Kumar, Rupesh;
Bahng, Soon;
Marians, Kenneth J

Publication type:

Article