Works matching IS 03051048 AND DT 2022 AND VI 50 AND IP 3

Results: 47

Mechanisms of Cre recombinase synaptic complex assembly and activation illuminated by Cryo-EM.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1753, doi. 10.1093/nar/gkac032

By:

Stachowski, Kye;
Norris, Andrew S;
Potter, Devante;
Wysocki, Vicki H;
Foster, Mark P

Publication type:

Article

Correction to 'RiboVIEW: a computational framework for visualization, quality control and statistical analysis of ribosome profiling data'.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1794, doi. 10.1093/nar/gkac031

By:

Legrand, Carine;
Tuorto, Francesca

Publication type:

Article

Correction to 'Bias-minimized quantification of microRNA reveals widespread alternative processing and 3′ end modification'.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1799, doi. 10.1093/nar/gkac078

By:

Kim, Haedong;
Kim, Jimi;
Kim, Kijun;
Chang, Hyeshik;
You, Kwontae;
Kim, V Narry

Publication type:

Article

CRISPR–Cas9-mediated nuclear transport and genomic integration of nanostructured genes in human primary cells.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1256, doi. 10.1093/nar/gkac049

By:

Lin-Shiao, Enrique;
Pfeifer, Wolfgang G;
Shy, Brian R;
Saffari Doost, Mohammad;
Chen, Evelyn;
Vykunta, Vivasvan S;
Hamilton, Jennifer R;
Stahl, Elizabeth C;
Lopez, Diana M;
Sandoval Espinoza, Cindy R;
Deyanov, Alexander E;
Lew, Rachel J;
Poirer, Michael G;
Marson, Alexander;
Castro, Carlos E;
Doudna, Jennifer A

Publication type:

Article

Correction to 'The human insulin receptor mRNA contains a functional internal ribosome entry segment'.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1796, doi. 10.1093/nar/gkac063

By:

Spriggs, Keith A;
Cobbold, Laura C;
Ridley, Simon H;
Coldwell, Mark;
Bottley, Andrew;
Bushell, Martin;
Willis, Anne E;
Siddle, Kenneth

Publication type:

Article

Cryo-EM structure of the ancient eukaryotic ribosome from the human parasite Giardia lamblia.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1770, doi. 10.1093/nar/gkac046

By:

Hiregange, Disha-Gajanan;
Rivalta, Andre;
Bose, Tanaya;
Breiner-Goldstein, Elinor;
Samiya, Sarit;
Cimicata, Giuseppe;
Kulakova, Liudmila;
Zimmerman, Ella;
Bashan, Anat;
Herzberg, Osnat;
Yonath, Ada

Publication type:

Article

Cytoplasmic switch of ARS2 isoforms promotes nonsense-mediated mRNA decay and arsenic sensitivity.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1620, doi. 10.1093/nar/gkac033

By:

Mesa-Perez, Monica;
Hamilton, Phineas T;
Miranda, Alex;
Brodie, Nicholas;
O'Sullivan, Connor;
Christie, Jennifer;
Ryan, Bridget C;
Chow, Robert L;
Goodlett, David;
Nelson, Christopher J;
Howard, Perry L

Publication type:

Article

Correction to 'TREND: a platform for exploring protein function in prokaryotes based on phylogenetic, domain architecture and gene neighborhood analyses'.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1795, doi. 10.1093/nar/gkac034

By:

Gumerov, Vadim M;
Zhulin, Igor B

Publication type:

Article

Waves of sumoylation support transcription dynamics during adipocyte differentiation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1351, doi. 10.1093/nar/gkac027

By:

Zhao, Xu;
Hendriks, Ivo A;
Le Gras, Stéphanie;
Ye, Tao;
Ramos-Alonso, Lucía;
Nguéa P, Aurélie;
Lien, Guro Flor;
Ghasemi, Fatemeh;
Klungland, Arne;
Jost, Bernard;
Enserink, Jorrit M;
Nielsen, Michael L;
Chymkowitch, Pierre

Publication type:

Article

Polympact: exploring functional relations among common human genetic variants.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1335, doi. 10.1093/nar/gkac024

By:

Valentini, Samuel;
Gandolfi, Francesco;
Carolo, Mattia;
Dalfovo, Davide;
Pozza, Lara;
Romanel, Alessandro

Publication type:

Article

Modeling the ribosomal small subunit dynamic in Saccharomyces cerevisiae based on TCP-seq data.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1297, doi. 10.1093/nar/gkac021

By:

Neumann, Tamar;
Tuller, Tamir

Publication type:

Article

Dicer dependent tRNA derived small RNAs promote nascent RNA silencing.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1734, doi. 10.1093/nar/gkac022

By:

Di Fazio, Arianna;
Schlackow, Margarita;
Pong, Sheng Kai;
Alagia, Adele;
Gullerova, Monika

Publication type:

Article

fork protection complex recruits FACT to reorganize nucleosomes during replication.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1317, doi. 10.1093/nar/gkac005

By:

Safaric, Barbara;
Chacin, Erika;
Scherr, Matthias J;
Rajappa, Lional;
Gebhardt, Christian;
Kurat, Christoph F;
Cordes, Thorben;
Duderstadt, Karl E

Publication type:

Article

Experimental demonstration of operon formation catalyzed by insertion sequence.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1673, doi. 10.1093/nar/gkac004

By:

Kanai, Yuki;
Tsuru, Saburo;
Furusawa, Chikara

Publication type:

Article

Rapid factor depletion highlights intricacies of nucleoplasmic RNA degradation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1583, doi. 10.1093/nar/gkac001

By:

Gockert, Maria;
Schmid, Manfred;
Jakobsen, Lis;
Jens, Marvin;
Andersen, Jens S;
Jensen, Torben Heick

Publication type:

Article

Adenovirus prevents dsRNA formation by promoting efficient splicing of viral RNA.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1201, doi. 10.1093/nar/gkab896

By:

Price, Alexander M;
Steinbock, Robert T;
Di, Chao;
Hayer, Katharina E;
Li, Yize;
Herrmann, Christin;
Parenti, Nicholas A;
Whelan, Jillian N;
Weiss, Susan R;
Weitzman, Matthew D

Publication type:

Article

Chirality matters: stereo-defined phosphorothioate linkages at the termini of small interfering RNAs improve pharmacology in vivo.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1221, doi. 10.1093/nar/gkab544

By:

Jahns, Hartmut;
Taneja, Nate;
Willoughby, Jennifer L S;
Akabane-Nakata, Masaaki;
Brown, Christopher R;
Nguyen, Tuyen;
Bisbe, Anna;
Matsuda, Shigeo;
Hettinger, Matt;
Manoharan, Rajar M;
Rajeev, Kallanthottathil G;
Maier, Martin A;
Zlatev, Ivan;
Charisse, Klaus;
Egli, Martin;
Manoharan, Muthiah

Publication type:

Article

Multiple in vivo roles for the C-terminal domain of the RNA chaperone Hfq.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1718, doi. 10.1093/nar/gkac017

By:

Kavita, Kumari;
Zhang, Aixia;
Tai, Chin-Hsien;
Majdalani, Nadim;
Storz, Gisela;
Gottesman, Susan

Publication type:

Article

complex network of interactions governs DNA methylation at telomeric regions.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1449, doi. 10.1093/nar/gkac012

By:

Farrell, Colin;
Vaquero-Sedas, María I;
Cubiles, María D;
Thompson, Michael;
Vega-Vaquero, Alejandro;
Pellegrini, Matteo;
Vega-Palas, Miguel A

Publication type:

Article

TRIM21 suppresses CHK1 activation by preferentially targeting CLASPIN for K63-linked ubiquitination.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1517, doi. 10.1093/nar/gkac011

By:

Zhu, Xuefei;
Xue, Jingwei;
Jiang, Xing;
Gong, Yamin;
Gao, Congwen;
Cao, Ting;
Li, Qian;
Bai, Lulu;
Li, Yuwei;
Xu, Gaixia;
Peng, Bin;
Xu, Xingzhi

Publication type:

Article

TOPORS-mediated RAD51 SUMOylation facilitates homologous recombination repair.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1501, doi. 10.1093/nar/gkac009

By:

Hariharasudhan, Gurusamy;
Jeong, Seo-Yeon;
Kim, Min-Ji;
Jung, Sung Mi;
Seo, Gwanwoo;
Moon, Ju-Ran;
Lee, Sumi;
Chang, In-Youb;
Kee, Younghoon;
You, Ho Jin;
Lee, Jung-Hee

Publication type:

Article

Supramolecular CRISPR-OFF switches with host–guest chemistry.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1241, doi. 10.1093/nar/gkac008

By:

Xiong, Wei;
Liu, Xingyu;
Qi, Qianqian;
Ji, Huimin;
Liu, Fengbo;
Zhong, Cheng;
Liu, Simin;
Tian, Tian;
Zhou, Xiang

Publication type:

Article

Structural characterization of a new subclass of panicum mosaic virus-like 3′ cap-independent translation enhancer.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1601, doi. 10.1093/nar/gkac007

By:

Johnson, Philip Z;
Kasprzak, Wojciech K;
Shapiro, Bruce A;
Simon, Anne E

Publication type:

Article

Variational autoencoding of gene landscapes during mouse CNS development uncovers layered roles of Polycomb Repressor Complex 2.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1280, doi. 10.1093/nar/gkac006

By:

Mora, Ariane;
Rakar, Jonathan;
Cobeta, Ignacio Monedero;
Salmani, Behzad Yaghmaeian;
Starkenberg, Annika;
Thor, Stefan;
Bodén, Mikael

Publication type:

Article

Characterization of the SARS-CoV-2 ExoN (nsp14ExoN–nsp10) complex: implications for its role in viral genome stability and inhibitor identification.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1484, doi. 10.1093/nar/gkab1303

By:

Baddock, Hannah T;
Brolih, Sanja;
Yosaatmadja, Yuliana;
Ratnaweera, Malitha;
Bielinski, Marcin;
Swift, Lonnie P;
Cruz-Migoni, Abimael;
Fan, Haitian;
Keown, Jeremy R;
Walker, Alexander P;
Morris, Garrett M;
Grimes, Jonathan M;
Fodor, Ervin;
Schofield, Christopher J;
Gileadi, Opher;
McHugh, Peter J

Publication type:

Article

Modulated termination of non-coding transcription partakes in the regulation of gene expression.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1430, doi. 10.1093/nar/gkab1304

By:

Haidara, Nouhou;
Giannini, Marta;
Porrua, Odil

Publication type:

Article

modular RNA interference system for multiplexed gene regulation.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1783, doi. 10.1093/nar/gkab1301

By:

Dwijayanti, Ari;
Storch, Marko;
Stan, Guy-Bart;
Baldwin, Geoff S

Publication type:

Article

53BP1-ACLY-SLBP-coordinated activation of replication-dependent histone biogenesis maintains genomic integrity.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1465, doi. 10.1093/nar/gkab1300

By:

Wu, TingTing;
Jun, Semo;
Choi, Eun-Ji;
Sun, Jiao;
Yang, Eun-Bi;
Lee, Hyun-Seo;
Kim, Sang-Yong;
Fahmi, Naima Ahmed;
Jiang, Qibing;
Zhang, Wei;
Yong, Jeongsik;
Lee, Jung-Hee;
You, Ho Jin

Publication type:

Article

Different modes of spacer acquisition by the Staphylococcus epidermidis type III-A CRISPR-Cas system.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1661, doi. 10.1093/nar/gkab1299

By:

Aviram, Naama;
Thornal, Ashley N;
Zeevi, David;
Marraffini, Luciano A

Publication type:

Article

Spatio-temporal dynamics of intra-host variability in SARS-CoV-2 genomes.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1551, doi. 10.1093/nar/gkab1297

By:

Pathak, Ankit K;
Mishra, Gyan Prakash;
Uppili, Bharathram;
Walia, Safal;
Fatihi, Saman;
Abbas, Tahseen;
Banu, Sofia;
Ghosh, Arup;
Kanampalliwar, Amol;
Jha, Atimukta;
Fatma, Sana;
Aggarwal, Shifu;
Dhar, Mahesh Shanker;
Marwal, Robin;
Radhakrishnan, Venkatraman Srinivasan;
Ponnusamy, Kalaiarasan;
Kabra, Sandhya;
Rakshit, Partha;
Bhoyar, Rahul C;
Jain, Abhinav

Publication type:

Article

Selection and identification of an RNA aptamer that specifically binds the HIV-1 capsid lattice and inhibits viral replication.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1701, doi. 10.1093/nar/gkab1293

By:

Gruenke, Paige R;
Aneja, Rachna;
Welbourn, Sarah;
Ukah, Obiaara B;
Sarafianos, Stefan G;
Burke, Donald H;
Lange, Margaret J

Publication type:

Article

Diverse DNA modification in marine prokaryotic and viral communities.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1531, doi. 10.1093/nar/gkab1292

By:

Hiraoka, Satoshi;
Sumida, Tomomi;
Hirai, Miho;
Toyoda, Atsushi;
Kawagucci, Shinsuke;
Yokokawa, Taichi;
Nunoura, Takuro

Publication type:

Article

High-fidelity KKH variant of Staphylococcus aureus Cas9 nucleases with improved base mismatch discrimination.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1650, doi. 10.1093/nar/gkab1291

By:

Yuen, Chaya T L;
Thean, Dawn G L;
Chan, Becky K C;
Zhou, Peng;
Kwok, Cynthia C S;
Chu, Hoi Yee;
Cheung, Maggie S H;
Wang, Bei;
Chan, Yee Man;
Mak, Silvia Y L;
Leung, Anskar Y;
Choi, Gigi C G;
Zheng, Zongli;
Wong, Alan S L

Publication type:

Article

piRNAs of Caenorhabditis elegans broadly silence nonself sequences through functionally random targeting.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1416, doi. 10.1093/nar/gkab1290

By:

McEnany, John;
Meir, Yigal;
Wingreen, Ned S

Publication type:

Article

Nuclear and cytoplasmic RNA exosomes and PELOTA1 prevent miRNA-induced secondary siRNA production in Arabidopsis.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1396, doi. 10.1093/nar/gkab1289

By:

Vigh, Maria L;
Bressendorff, Simon;
Thieffry, Axel;
Arribas-Hernández, Laura;
Brodersen, Peter

Publication type:

Article

Thyroid hormone dependent transcriptional programming by TRβ requires SWI/SNF chromatin remodelers.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1382, doi. 10.1093/nar/gkab1287

By:

Gillis, Noelle E;
Boyd, Joseph R;
Tomczak, Jennifer A;
Frietze, Seth;
Carr, Frances E

Publication type:

Article

Vimentin binds to G-quadruplex repeats found at telomeres and gene promoters.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1370, doi. 10.1093/nar/gkab1274

By:

Ceschi, Silvia;
Berselli, Michele;
Cozzaglio, Marta;
Giantin, Mery;
Toppo, Stefano;
Spolaore, Barbara;
Sissi, Claudia

Publication type:

Article

Identification, functional characterization, assembly and structure of ToxIN type III toxin–antitoxin complex from E. coli.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1687, doi. 10.1093/nar/gkab1264

By:

Manikandan, Parthasarathy;
Sandhya, Sankaran;
Nadig, Kavyashree;
Paul, Souradip;
Srinivasan, Narayanaswamy;
Rothweiler, Ulli;
Singh, Mahavir

Publication type:

Article

C nucleotide at the mature 5′ end of the Escherichia coli proline tRNAs is required for the RNase E cleavage specificity at the 3′ terminus as well as functionality.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1639, doi. 10.1093/nar/gkab1260

By:

Mohanty, Bijoy K;
Maples, Valerie;
Kushner, Sidney R

Publication type:

Article

DNA supercoiling-mediated collective behavior of co-transcribing RNA polymerases.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1269, doi. 10.1093/nar/gkab1252

By:

Tripathi, Shubham;
Brahmachari, Sumitabha;
Onuchic, José N;
Levine, Herbert

Publication type:

Article

Unique properties of spacer acquisition by the type III-A CRISPR-Cas system.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1562, doi. 10.1093/nar/gkab1193

By:

Zhang, Xinfu;
Garrett, Sandra;
Graveley, Brenton R;
Terns, Michael P

Publication type:

Article

Isocratic HPLC analysis for the simultaneous determination of dNTPs, rNTPs and ADP in biological samples.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. e18, doi. 10.1093/nar/gkab1117

By:

Ranjbarian, Farahnaz;
Sharma, Sushma;
Falappa, Giulia;
Taruschio, Walter;
Chabes, Andrei;
Hofer, Anders

Publication type:

Article

Deeplasmid: deep learning accurately separates plasmids from bacterial chromosomes.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. e17, doi. 10.1093/nar/gkab1115

By:

Andreopoulos, William B;
Geller, Alexander M;
Lucke, Miriam;
Balewski, Jan;
Clum, Alicia;
Ivanova, Natalia N;
Levy, Asaf

Publication type:

Article

From genotype to phenotype in Arabidopsis thaliana: in-silico genome interpretation predicts 288 phenotypes from sequencing data.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. e16, doi. 10.1093/nar/gkab1099

By:

Raimondi, Daniele;
Corso, Massimiliano;
Fariselli, Piero;
Moreau, Yves

Publication type:

Article

Improved dsDNA recombineering enables versatile multiplex genome engineering of kilobase-scale sequences in diverse bacteria.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. e15, doi. 10.1093/nar/gkab1076

By:

Wang, Xue;
Zheng, Wentao;
Zhou, Haibo;
Tu, Qiang;
Tang, Ya-Jie;
Stewart, A Francis;
Zhang, Youming;
Bian, Xiaoying

Publication type:

Article

UFold: fast and accurate RNA secondary structure prediction with deep learning.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. e14, doi. 10.1093/nar/gkab1074

By:

Fu, Laiyi;
Cao, Yingxin;
Wu, Jie;
Peng, Qinke;
Nie, Qing;
Xie, Xiaohui

Publication type:

Article

Genome-wide mapping of G-quadruplex structures with CUT&Tag.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. e13, doi. 10.1093/nar/gkab1073

By:

Lyu, Jing;
Shao, Rui;
Kwong Yung, Philip Yuk;
Elsässer, Simon J

Publication type:

Article