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Strand antagonism in RNAi: an explanation of differences in potency between intracellularly expressed siRNA and shRNA.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 600, doi. 10.1093/nar/gkaa1217
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Chromatin remodeler Ino80C acts independently of H2A.Z to evict promoter nucleosomes and stimulate transcription of highly expressed genes in yeast.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 599, doi. 10.1093/nar/gkaa1212
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Functional analysis reveals G/U pairs critical for replication and trafficking of an infectious non-coding viroid RNA.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 596, doi. 10.1093/nar/gkaa1211
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Multiple competing RNA structures dynamically control alternative splicing in the human ATE1 gene.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 479, doi. 10.1093/nar/gkaa1208
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G-quadruplex–R-loop interactions and the mechanism of anticancer G-quadruplex binders.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 595, doi. 10.1093/nar/gkaa1206
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DNA damage alters nuclear mechanics through chromatin reorganization.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 340, doi. 10.1093/nar/gkaa1202
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APOBEC1 cytosine deaminase activity on single-stranded DNA is suppressed by replication protein A.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 322, doi. 10.1093/nar/gkaa1201
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A functional connection between translation elongation and protein folding at the ribosome exit tunnel in Saccharomyces cerevisiae.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 206, doi. 10.1093/nar/gkaa1200
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Structural basis for inhibition of the type I-F CRISPR–Cas surveillance complex by AcrIF4, AcrIF7 and AcrIF14.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 584, doi. 10.1093/nar/gkaa1199
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Structural basis for guide RNA trimming by RNase D ribonuclease in Trypanosoma brucei.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 568, doi. 10.1093/nar/gkaa1197
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Structural basis of sequestration of the anti-Shine-Dalgarno sequence in the Bacteroidetes ribosome.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 547, doi. 10.1093/nar/gkaa1195
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The versatile interactome of chloroplast ribosomes revealed by affinity purification mass spectrometry.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 400, doi. 10.1093/nar/gkaa1192
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Histone methyltransferase ATX1 dynamically regulates fiber secondary cell wall biosynthesis in Arabidopsis inflorescence stem.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 190, doi. 10.1093/nar/gkaa1191
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Systematic evaluation of the effects of genetic variants on PIWI-interacting RNA expression across 33 cancer types.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 90, doi. 10.1093/nar/gkaa1190
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The mTOR regulated RNA-binding protein LARP1 requires PABPC1 for guided mRNA interaction.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 458, doi. 10.1093/nar/gkaa1189
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An atypical BRCT–BRCT interaction with the XRCC1 scaffold protein compacts human DNA Ligase IIIα within a flexible DNA repair complex.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 306, doi. 10.1093/nar/gkaa1188
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Ribosome association primes the stringent factor Rel for tRNA-dependent locking in the A-site and activation of (p)ppGpp synthesis.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 444, doi. 10.1093/nar/gkaa1187
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Water spines and networks in G-quadruplex structures.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 519, doi. 10.1093/nar/gkaa1177
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Basic mechanisms and kinetics of pause-interspersed transcript elongation.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 15, doi. 10.1093/nar/gkaa1182
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Characterization of the first tetrameric transcription factor of the GntR superfamily with allosteric regulation from the bacterial pathogen Agrobacterium fabrum.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 529, doi. 10.1093/nar/gkaa1181
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Ribosome profiling reveals ribosome stalling on tryptophan codons and ribosome queuing upon oxidative stress in fission yeast.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 383, doi. 10.1093/nar/gkaa1180
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Pseudouridine-mediated translation control of mRNA by methionine aminoacyl tRNA synthetase.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 432, doi. 10.1093/nar/gkaa1178
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Single-molecule visualization of human RECQ5 interactions with single-stranded DNA recombination intermediates.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 285, doi. 10.1093/nar/gkaa1184
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Identification of lysine isobutyrylation as a new histone modification mark.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 177, doi. 10.1093/nar/gkaa1176
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A skipping rope translocation mechanism in a widespread family of DNA repair helicases.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 504, doi. 10.1093/nar/gkaa1174
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G-Quadruplex loops regulate PARP-1 enzymatic activation.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 416, doi. 10.1093/nar/gkaa1172
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Genome-wide investigation of the dynamic changes of epigenome modifications after global DNA methylation editing.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 158, doi. 10.1093/nar/gkaa1169
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Flanking sequence preference modulates de novo DNA methylation in the mouse genome.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 145, doi. 10.1093/nar/gkaa1168
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Reconstitution of mammalian mitochondrial translation system capable of correct initiation and long polypeptide synthesis from leaderless mRNA.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 371, doi. 10.1093/nar/gkaa1165
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The nature of the modification at position 37 of tRNA<sup>Phe</sup> correlates with acquired taxol resistance.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 38, doi. 10.1093/nar/gkaa1164
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TonEBP recognizes R-loops and initiates m6A RNA methylation for R-loop resolution.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 269, doi. 10.1093/nar/gkaa1162
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Validation of human microRNA target pathways enables evaluation of target prediction tools.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 127, doi. 10.1093/nar/gkaa1161
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The proto-Nucleic Acid Builder: a software tool for constructing nucleic acid analogs.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 79, doi. 10.1093/nar/gkaa1159
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Deploying MMEJ using MENdel in precision gene editing applications for gene therapy and functional genomics.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 67, doi. 10.1093/nar/gkaa1156
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Histones participate in base excision repair of 8-oxodGuo by transiently cross-linking with active repair intermediates in nucleosome core particles.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 257, doi. 10.1093/nar/gkaa1153
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Structural basis for the substrate specificity and catalytic features of pseudouridine kinase from Arabidopsis thaliana.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 491, doi. 10.1093/nar/gkaa1144
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Predicting regulatory variants using a dense epigenomic mapped CNN model elucidated the molecular basis of trait-tissue associations.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 53, doi. 10.1093/nar/gkaa1137
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High-resolution visualization and quantification of nucleic acid–based therapeutics in cells and tissues using Nanoscale secondary ion mass spectrometry (NanoSIMS).
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 1, doi. 10.1093/nar/gkaa1112
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The fragility of a structurally diverse duplication block triggers recurrent genomic amplification.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 244, doi. 10.1093/nar/gkaa1136
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Histone benzoylation serves as an epigenetic mark for DPF and YEATS family proteins.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 114, doi. 10.1093/nar/gkaa1130
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The transcriptional repressors VAL1 and VAL2 recruit PRC2 for genome-wide Polycomb silencing in Arabidopsis.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 98, doi. 10.1093/nar/gkaa1129
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Heritable pattern of oxidized DNA base repair coincides with pre-targeting of repair complexes to open chromatin.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 221, doi. 10.1093/nar/gkaa1120
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MiR-CLIP reveals iso-miR selective regulation in the miR-124 targetome.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 25, doi. 10.1093/nar/gkaa1117
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Human GTPBP5 is involved in the late stage of mitoribosome large subunit assembly.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 354, doi. 10.1093/nar/gkaa1131
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A simplified strategy for titrating gene expression reveals new relationships between genotype, environment, and bacterial growth.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. e6, doi. 10.1093/nar/gkaa1073
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Optimized design of antisense oligomers for targeted rRNA depletion.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. e5, doi. 10.1093/nar/gkaa1072
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e-MutPath: computational modeling reveals the functional landscape of genetic mutations rewiring interactome networks.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. e2, doi. 10.1093/nar/gkaa1015
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Asymmetron: a toolkit for the identification of strand asymmetry patterns in biological sequences.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. e4, doi. 10.1093/nar/gkaa1052
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TENET: gene network reconstruction using transfer entropy reveals key regulatory factors from single cell transcriptomic data.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. e1, doi. 10.1093/nar/gkaa1014
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A network-based comparative framework to study conservation and divergence of proteomes in plant phylogenies.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. e3, doi. 10.1093/nar/gkaa1041
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