Works matching DE "VIRAL integration (Genetics)"

Results: 43

Nuclear architecture dictates HIV-1 integration site selection.

Published in:

Nature, 2015, v. 521, n. 7551, p. 227, doi. 10.1038/nature14226

By:

Marini, Bruna;
Kertesz-Farkas, Attila;
Ali, Hashim;
Lucic, Bojana;
Lisek, Kamil;
Manganaro, Lara;
Pongor, Sandor;
Luzzati, Roberto;
Recchia, Alessandra;
Mavilio, Fulvio;
Giacca, Mauro;
Lusic, Marina

Publication type:

Article

Integration-induced death.

Published in:

Nature Immunology, 2013, v. 14, n. 8, p. 776, doi. 10.1038/ni.2673

By:

Visan, Ioana

Publication type:

Article

The current outlook of human papillomavirus and its association with digestive tract cancer.

Published in:

Revista Logos Ciencia & Tecnologia, 2021, v. 13, n. 1, p. 129, doi. 10.22335/rlct.v13i1.1292

By:

Almonacid Urrego, Isabel Cristina;
Almonacid Urrego, Carmen Cecilia;
Rosas Arango, Sonia Marcela;
Hernández Rojas, Edith del Carmen;
González Devia, Johanna Lizeth

Publication type:

Article

The Friend leukaemia virus integration 1 ( Fli-1) transcription factor affects lupus nephritis development by regulating inflammatory cell infiltration into the kidney.

Published in:

Clinical & Experimental Immunology, 2014, v. 177, n. 1, p. 102, doi. 10.1111/cei.12310

By:

Sato, S.;
Zhang, X. K.

Publication type:

Article

Prognostic Value of EVI1 Expression in Pediatric Acute Myeloid Leukemia: A Systematic Review.

Published in:

Iranian Journal of Pathology, 2018, v. 13, n. 3, p. 294

By:

Sadeghian, Mohammad Hadi;
Dezaki, Zahra Rezaei

Publication type:

Article

Primary Subcutaneous Spindle Cell Ewing Sarcoma w ith Strong S100 Expression and EWSR1-FLI1 Fusion: A Case Report.

Published in:

2014

By:

ARNOLD, MICHAEL A.;
BALLESTER, LEOMAR Y.;
PACK, SVETLANA D.;
ABDULLAEV, ZIEDULLA;
MERCHANT, MELINDA;
TSOKOS, MARIA G.

Publication type:

Case Study

Meis1 Coordinates Cerebellar Granule Cell Development by Regulating Pax6 Transcription, BMP Signaling and Atoh1 Degradation.

Published in:

Journal of Neuroscience, 2018, v. 38, n. 5, p. 1277, doi. 10.1523/JNEUROSCI.1545-17.2017

By:

Tomoo Owa;
Shinichiro Taya;
Satoshi Miyashita;
Mariko Yamashita;
Toma Adachi;
Koyo Yamada;
Miwa Yokoyama;
Shogo Aida;
Tomoki Nishioka;
Yukiko U. Inoue;
Ryo Goitsuka;
Takuro Nakamura;
Takayoshi Inoue;
Kozo Kaibuchi;
Mikio Hoshino

Publication type:

Article

ViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 649, doi. 10.1093/bioinformatics/btt011

By:

Li, Jing-Woei;
Wan, Raymond;
Yu, Chi-Shing;
Co, Ngai Na;
Wong, Nathalie;
Chan, Ting-Fung

Publication type:

Article

Application of canonical correlation analysis for identifying viral integration preferences.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 651, doi. 10.1093/bioinformatics/bts027

By:

Gumus, Ergun;
Kursun, Olcay;
Sertbas, Ahmet;
Ustek, Duran

Publication type:

Article

Comparative study of HPV16 integration in cervical lesions between ethnicities with high and low rates of infection with high-risk HPV and the correlation between integration rate and cervical neoplasia.

Published in:

Experimental & Therapeutic Medicine, 2015, v. 10, n. 6, p. 2169, doi. 10.3892/etm.2015.2740

By:

LILI HAN;
TUERXUNAYI MAIMAITIMING;
SULAIYA HUSAIYIN;
LIN WANG;
KUNDUOZI WUSAINAHONG;
CHUNHUA MA;
MAYINUER NIYAZI

Publication type:

Article

Arsenic trioxide induces apoptosis in the THP1 cell line by downregulating EVI-1.

Published in:

Experimental & Therapeutic Medicine, 2014, v. 8, n. 1, p. 85, doi. 10.3892/etm.2014.1716

By:

LING-YUN ZHOU;
FANG-YUAN CHEN;
LI-JING SHEN;
HAI-XIA WAN;
JI-HUA ZHONG

Publication type:

Article

The Telomeric Repeats of Human Herpesvirus 6A (HHV-6A) Are Required for Efficient Virus Integration.

Published in:

PLoS Pathogens, 2016, v. 12, n. 5, p. 1, doi. 10.1371/journal.ppat.1005666

By:

Wallaschek, Nina;
Sanyal, Anirban;
Pirzer, Fabian;
Gravel, Annie;
Mori, Yasuko;
Flamand, Louis;
Kaufer, Benedikt B.

Publication type:

Article

Methylation of the L1 gene and integration of human papillomavirus 16 and 18 in cervical carcinoma and premalignant lesions.

Published in:

Oncology Letters, 2018, v. 15, n. 2, p. 2278, doi. 10.3892/ol.2017.7596

By:

Torres-Rojas, Francisco Israel;
Alarcón-Romero, Luz del Carmen;
Leyva-Vázquez, Marco Antonio;
Ortiz-Ortiz, Julio;
Mendoza-Catalán, Miguel Ángel;
Hernández-Sotelo, Daniel;
Del Moral-Hernández, Oscar;
Rodríguez-Ruiz, Hugo Alberto;
Leyva-Illades, Dinorah;
Flores-Alfaro, Eugenia;
Illades-Aguiar, Berenice

Publication type:

Article

Expression of BMI1 and p16 in laryngeal squamous cell carcinoma.

Published in:

Head & Neck, 2013, v. 35, n. 6, p. 847, doi. 10.1002/hed.23042

By:

Allegra, Eugenia;
Caltabiano, Rosario;
Amorosi, Andrea;
Vasquez, Enrico;
Garozzo, Aldo;
Puzzo, Lidia

Publication type:

Article

High EVI1 expression is associated with MLL rearrangements and predicts decreased survival in paediatric acute myeloid leukaemia: a report from the children's oncology group.

Published in:

British Journal of Haematology, 2013, v. 162, n. 5, p. 670, doi. 10.1111/bjh.12444

By:

Ho, Phoenix A.;
Alonzo, Todd A.;
Gerbing, Robert B.;
Pollard, Jessica A.;
Hirsch, Betsy;
Raimondi, Susana C.;
Cooper, Todd;
Gamis, Alan S.;
Meshinchi, Soheil

Publication type:

Article

The role of Trib1 in myeloid leukaemogenesis and differentiation.

Published in:

Biochemical Society Transactions, 2015, v. 43, n. 5, p. 1104, doi. 10.1042/BST20150110

By:

Takuro Nakamura

Publication type:

Article

BS-virus-finder: virus integration calling using bisulfite sequencing data.

Published in:

GigaScience, 2018, v. 7, n. 1, p. 1, doi. 10.1093/gigascience/gix123

By:

Shengjie Gao;
Xuesong Hu;
Fengping Xu;
Changduo Gao;
Kai Xiong;
Xiao Zhao;
Haixiao Chen;
Shancen Zhao;
Mengyao Wang;
Dongke Fu;
Xiaohui Zhao;
Jie Bai;
Likai Mao;
Bo Li;
Song Wu;
Jian Wang;
Shengbin Li;
Huangming Yang;
Bolund, Lars;
Pedersen, Christian N. S.

Publication type:

Article

Editorial: betaretrovirus in biliary epithelia of patients with autoimmune and cryptogenic liver disease.

Published in:

2015

By:

Tabibian, J. H.;
Lindor, K. D.

Publication type:

Editorial

Induction of Antibodies Binding to the Membrane Proximal External Region of gp36 of HIV-2.

Published in:

Intervirology, 2012, v. 55, n. 3, p. 252, doi. 10.1159/000324483

By:

Behrendt, R.;
Fiebig, U.;
Kurth, R.;
Denner, J.

Publication type:

Article

Structural and Functional Insights into Foamy Viral Integrase.

Published in:

Viruses (1999-4915), 2013, v. 5, n. 7, p. 1850, doi. 10.3390/v5071850

By:

Alamgir Hossain, Md.;
Khadem Ali, Md.;
Cha-Gyun Shin

Publication type:

Article

VERSE: a novel approach to detect virus integration in host genomes through reference genome customization.

Published in:

Genome Medicine, 2015, v. 7, n. 1, p. 1, doi. 10.1186/s13073-015-0126-6

By:

Qingguo Wang;
Peilin Jia;
Zhongming Zhao

Publication type:

Article

Induced Pluripotent Stem Cells: A New Frontier for Stem Cells in Dentistry.

Published in:

2015

By:

Hynes, K.;
Menichanin, D.;
Bright, R.;
Ivanovski, S.;
Hutmacher, D. W.;
Gronthos, S.;
Bartold, P. M.

Publication type:

journal article

MEIS1 inhibits clear cell renal cell carcinoma cells proliferation and in vitro invasion or migration.

Published in:

2017

By:

Jie Zhu;
Liang Cui;
Axiang Xu;
Xiaotao Yin;
Fanglong Li;
Jiangping Gao;
Zhu, Jie;
Cui, Liang;
Xu, Axiang;
Yin, Xiaotao;
Li, Fanglong;
Gao, Jiangping

Publication type:

journal article

Overexpression of ecotropic viral integration site-1 is a prognostic factor of lung squamous cell cancer.

Published in:

OncoTargets & Therapy, 2017, v. 10, p. 2739, doi. 10.2147/OTT.S132410

By:

Xueliang Xu;
Shengchen Liu;
Xia Ji

Publication type:

Article

Anti-Apoptotic Effects of Lentiviral Vector Transduction Promote Increased Rituximab Tolerance in Cancerous B-Cells.

Published in:

PLoS ONE, 2016, v. 11, n. 4, p. 1, doi. 10.1371/journal.pone.0153069

By:

Ranjbar, Benyamin;
Krogh, Louise Bechmann;
Laursen, Maria Bach;
Primo, Maria Nascimento;
Marques, Sara Correia;
Dybkær, Karen;
Mikkelsen, Jacob Giehm

Publication type:

Article

Comprehensive Analysis of HPV16 Integration in OSCC Reveals No Significant Impact of Physical Status on Viral Oncogene and Virally Disrupted Human Gene Expression.

Published in:

PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0088718

By:

Olthof, Nadine C.;
Speel, Ernst-Jan M.;
Kolligs, Jutta;
Haesevoets, Annick;
Henfling, Mieke;
Ramaekers, Frans C. S.;
Preuss, Simon F.;
Drebber, Uta;
Wieland, Ulrike;
Silling, Steffi;
Lam, Wan L.;
Vucic, Emily A.;
Kremer, Bernd;
Klussmann, Jens-P.;
Huebbers, Christian U.

Publication type:

Article

Phosphorylation of the Leukemic Oncoprotein EVI1 on Serine 196 Modulates DNA Binding, Transcriptional Repression and Transforming Ability.

Published in:

PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0066510

By:

White, Daniel J.;
Unwin, Richard D.;
Bindels, Eric;
Pierce, Andrew;
Teng, Hsiang-Ying;
Muter, Joanne;
Greystoke, Brigit;
Somerville, Tim D.;
Griffiths, John;
Lovell, Simon;
Somervaille, Tim C. P.;
Delwel, Ruud;
Whetton, Anthony D.;
Meyer, Stefan

Publication type:

Article

<i>EVI1</i> Inhibits Apoptosis Induced by Antileukemic Drugs via Upregulation of <i>CDKN1A/p21/WAF</i> in Human Myeloid Cells.

Published in:

PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0056308

By:

Rommer, Anna;
Steinmetz, Birgit;
Herbst, Friederike;
Hackl, Hubert;
Heffeter, Petra;
Heilos, Daniela;
Filipits, Martin;
Steinleitner, Katarina;
Hemmati, Shayda;
Herbacek, Irene;
Schwarzinger, Ilse;
Hartl, Katharina;
Rondou, Pieter;
Glimm, Hanno;
Karakaya, Kadin;
Krämer, Alwin;
Berger, Walter;
Wieser, Rotraud

Publication type:

Article

Key determinants of target DNA recognition by retroviral intasomes.

Published in:

Retrovirology, 2015, v. 12, n. 1, p. 1, doi. 10.1186/s12977-015-0167-3

By:

Serrao, Erik;
Ballandras-Colas, Allison;
Cherepanov, Peter;
Maertens, Goedele N.;
Engelman, Alan N.

Publication type:

Article

Mutations affecting interaction of integrase with TNPO3 do not prevent HIV-1 cDNA nuclear import.

Published in:: Retrovirology, 2011, v. 8, n. 1, p. 104, doi. 10.1186/1742-4690-8-104
Publication type:: Article

SummonChimera Infers Integrated Viral Genomes with Nucleotide Precision from NGS data.

Published in:

BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/s12859-014-0348-4

By:

Katz, Joshua P.;
Pipas, James M.

Publication type:

Article

Integration of human papillomavirus type 16 in cervical cancer cells.

Published in:

Open Medicine, 2015, v. 10, n. 1, p. -1, doi. 10.1515/med-2015-0001

By:

Gudleviciene, Zivile;
Kanopiene, Daiva;
Stumbryte, Ausra;
Bausyte, Raminta;
Kirvelaitis, Edgaras;
Simanaviciene, Vaida;
Zvirbliene, Aurelija

Publication type:

Article

Small RNAs in plant defense responses during viral and bacterial interactions: similarities and differences.

Published in:

Frontiers in Plant Science, 2013, v. 4, p. 2, doi. 10.3389/fpls.2013.00343

By:

Peláez, Pablo;
Sanchez, Federico

Publication type:

Article

Investigating the role of viral integral membrane proteins in promoting the assembly of nepovirus and comovirus replication factories.

Published in:

Frontiers in Plant Science, 2012, v. 3, p. 1, doi. 10.3389/fpls.2012.00313

By:

Sanfaçon, Hélène

Publication type:

Article

Ecotopic viral integration site 1 (EVI1) transcriptionally targets talin1 (TLN1) and upregulates its expression in chronic myeloid leukemia.

Published in:

2018

By:

Halder, Arundhati;
Nayak, Kasturi Bala;
Chakraborty, Soumen

Publication type:

Letter to the Editor

Ecotropic viral integration site I regulates alpha1, 6-fucosyl transferase expression and blocks erythropoiesis in chronic myeloid leukemia.

Published in:

Leukemia & Lymphoma, 2017, v. 58, n. 8, p. 1941, doi. 10.1080/10428194.2016.1266622

By:

Kuila, Nivedita;
Nayak, Kasturi Bala;
Halder, Arundhati;
Agatheeswaran, Subramaniam;
Biswas, Ghanashyam;
Biswas, Sutapa;
Pattnayak, Naresh Chandra;
Chakraborty, Soumen

Publication type:

Article

Detecting virus integration sites based on multiple related sequencing data by VirTect.

Published in:

BMC Medical Genomics, 2019, v. 12, n. 1, p. 1, doi. 10.1186/s12920-018-0461-8

By:

Xia, Yuchao;
Liu, Yun;
Deng, Minghua;
Xi, Ruibin

Publication type:

Article

Abstracts.

Published in:: 2012
Publication type:: Abstract

HPVbase - a knowledgebase of viral integrations, methylation patterns and microRNAs aberrant expression: As potential biomarkers for Human papillomaviruses mediated carcinomas.

Published in:

Scientific Reports, 2015, p. 12522, doi. 10.1038/srep12522

By:

Kumar Gupta, Amit;
Kumar, Manoj

Publication type:

Article

Vy-PER: eliminating false positive detection of virus integration events in next generation sequencing data.

Published in:

Scientific Reports, 2015, p. 11534, doi. 10.1038/srep11534

By:

Forster, Michael;
Szymczak, Silke;
Ellinghaus, David;
Hemmrich, Georg;
Rühlemann, Malte;
Kraemer, Lars;
Mucha, Sören;
Franke, Andre;
Wienbrandt, Lars;
Stanulla, Martin

Publication type:

Article

Interferon treatment of human keratinocytes harboring extrachromosomal, persistent HPV-16 plasmid genomes induces de novo viral integration.

Published in:

Carcinogenesis, 2015, v. 36, n. 1, p. 151, doi. 10.1093/carcin/bgu236

By:

Lace, Michael J.;
Anson, James R.;
Haugen, Thomas H.;
Dierdorff, Jason M.;
Turek, Lubomir P.

Publication type:

Article

Neuraminidase as an enzymatic marker for detecting airborne Influenza virus and other viruses.

Published in:

Canadian Journal of Microbiology, 2017, v. 63, n. 2, p. 119, doi. 10.1139/cjm-2016-0450

By:

Turgeon, Nathalie;
Toulouse, Marie-Josée;
Ho, Jim;
Li, Dongqing;
Duchaine, Caroline

Publication type:

Article

Human Papillomavirus 16, 18, 31 and 45 viral load, integration and methylation status stratified by cervical disease stage.

Published in:

BMC Cancer, 2014, v. 14, p. 1, doi. 10.1186/1471-2407-14-384

By:

Marongiu, Luigi;
Godi, Anna;
Parry, John V.;
Beddows, Simon

Publication type:

Article