Works matching IS 2047217X AND DT 2022 AND VI 11

Results: 134

Utilizing an artificial intelligence system to build the digital structural proteome of reef-building corals.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac117

By:

Zhu, Yunchi;
Liao, Xin;
Han, Tingyu;
Chen, J-Y;
He, Chunpeng;
Lu, Zuhong

Publication type:

Article

The opportunities of research parasitism: A case study using the Barcode of Life Data System (BOLD).

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac123

By:

Pilgrim, Jack

Publication type:

Article

High-throughput proteomics and in vitro functional characterization of the 26 medically most important elapids and vipers from sub-Saharan Africa.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac121

By:

Nguyen, Giang Thi Tuyet;
O'Brien, Carol;
Wouters, Yessica;
Seneci, Lorenzo;
Gallissà-Calzado, Alex;
Campos-Pinto, Isabel;
Ahmadi, Shirin;
Laustsen, Andreas H;
Ljungars, Anne

Publication type:

Article

A Chromosome-level assembly of the Japanese eel genome, insights into gene duplication and chromosomal reorganization.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac120

By:

Wang, Hongbo;
Wan, Hin Ting;
Wu, Bin;
Jian, Jianbo;
Ng, Alice H M;
Chung, Claire Yik-Lok;
Chow, Eugene Yui-Ching;
Zhang, Jizhou;
Wong, Anderson O L;
Lai, Keng Po;
Chan, Ting Fung;
Zhang, Eric Lu;
Wong, Chris Kong-Chu

Publication type:

Article

3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac118

By:

Varadi, Mihaly;
Nair, Sreenath;
Sillitoe, Ian;
Tauriello, Gerardo;
Anyango, Stephen;
Bienert, Stefan;
Borges, Clemente;
Deshpande, Mandar;
Green, Tim;
Hassabis, Demis;
Hatos, Andras;
Hegedus, Tamas;
Hekkelman, Maarten L;
Joosten, Robbie;
Jumper, John;
Laydon, Agata;
Molodenskiy, Dmitry;
Piovesan, Damiano;
Salladini, Edoardo;
Salzberg, Steven L

Publication type:

Article

Improved microbial genomes and gene catalog of the chicken gut from metagenomic sequencing of high-fidelity long reads.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac116

By:

Zhang, Yan;
Jiang, Fan;
Yang, Boyuan;
Wang, Sen;
Wang, Hengchao;
Wang, Anqi;
Xu, Dong;
Fan, Wei

Publication type:

Article

Correction to: The state of Medusozoa genomics: current evidence and future challenges.

Published in:: 2022
Publication type:: Correction Notice

Publishing data to support the fight against human vector-borne diseases.

Published in:

2022

By:

Edmunds, Scott C;
Fouque, Florence;
Copas, Kyle A;
Hirsch, Tim;
Shimabukuro, Paloma Helena Fernandes;
Andrade-filho, José Dilermando;
Marceló, Catalina;
Morales, Carlos Andrés;
Lesmes, María Camila;
Fuya, Patricia;
Méndez, Sergio;
Cadena, Horacio;
Ávila-Díaz, Álvaro;
Santamaría, Erika;
Južnič-Zonta, Živko;
Eritja, Roger;
Palmer, John R B;
Bartumeus, Frederic;
dos Santos-Conceição, Maurício;
Chahad-Ehlers, Samira

Publication type:

Editorial

The Global Atlas of Bamboo and Rattan (GABR) Phase II: new resources for sustainable development.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac113

By:

Zhao, Hansheng;
Hou, Yinguang;
Wang, Jian;
Sun, Lei;
Gan, Junwei;
Meng, Yufei;
Li, Zhiqiang;
Li, Shanying;
Fan, Zeyu;
Wang, Yu;
Fei, Benhua

Publication type:

Article

Open-source benchmarking of IBD segment detection methods for biobank-scale cohorts.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac111

By:

Tang, Kecong;
Naseri, Ardalan;
Wei, Yuan;
Zhang, Shaojie;
Zhi, Degui

Publication type:

Article

What the Phage: a scalable workflow for the identification and analysis of phage sequences.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac110

By:

Marquet, Mike;
Hölzer, Martin;
Pletz, Mathias W;
Viehweger, Adrian;
Makarewicz, Oliwia;
Ehricht, Ralf;
Brandt, Christian

Publication type:

Article

The whole-genome assembly of an endangered Salicaceae species: Chosenia arbutifolia (Pall.) A. Skv.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac109

By:

He, Xudong;
Wang, Yu;
Lian, Jinmin;
Zheng, Jiwei;
Zhou, Jie;
Li, Jiang;
Jiao, Zhongyi;
Niu, Yongchao;
Wang, Weiwei;
Zhang, Jun;
Wang, Baosong;
Zhuge, Qiang

Publication type:

Article

An in vitro whole-cell electrophysiology dataset of human cortical neurons.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac108

By:

Howard, Derek;
Chameh, Homeira Moradi;
Guet-McCreight, Alexandre;
Hsiao, Huan Allen;
Vuong, Maggie;
Seo, Young Seok;
Shah, Prajay;
Nigam, Anukrati;
Chen, Yuxiao;
Davie, Melanie;
Hay, Etay;
Valiante, Taufik A;
Tripathy, Shreejoy J

Publication type:

Article

Selection signatures in goats reveal a novel deletion mutant underlying cashmere yield and diameter.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac107

By:

Han, Hu;
Yang, Man-Man;
Dan, Jiang;
Chao, Sheng-Yu;
Zhang, Xing-Ju;
Wei, Qiang;
Chen, Tao;
Wang, Qi-Ju;
Yang, Cheng-Ye;
Wulan, Bater;
Zhang, Ting-Ting;
Gen, Gang;
Mengkedala;
Li, Bin;
Deng, Wei-Dong;
Miao, Ze-Pu;
Wang, Ran;
Zhang, Qing-Feng;
Li, Lin;
Fang, Ming

Publication type:

Article

The Capparis spinosa var. herbacea genome provides the first genomic instrument for a diversity and evolution study of the Capparaceae family.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac106

By:

Wang, Lei;
Fan, Liqiang;
Zhao, Zhenyong;
Zhang, Zhibin;
Jiang, Li;
Chai, Mao;
Tian, Changyan

Publication type:

Article

Making Common Fund data more findable: catalyzing a data ecosystem.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac105

By:

Charbonneau, Amanda L;
Brady, Arthur;
Czajkowski, Karl;
Aluvathingal, Jain;
Canchi, Saranya;
Carter, Robert;
Chard, Kyle;
Clarke, Daniel J B;
Crabtree, Jonathan;
Creasy, Heather H;
D'Arcy, Mike;
Felix, Victor;
Giglio, Michelle;
Gingrich, Alicia;
Harris, Rayna M;
Hodges, Theresa K;
Ifeonu, Olukemi;
Jeon, Minji;
Kropiwnicki, Eryk;
Lim, Marisa C W

Publication type:

Article

learnMSA: learning and aligning large protein families.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac104

By:

Becker, Felix;
Stanke, Mario

Publication type:

Article

Defining the characteristics of interferon-alpha–stimulated human genes: insight from expression data and machine learning.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac103

By:

Chai, Haiting;
Gu, Quan;
Robertson, David L;
Hughes, Joseph

Publication type:

Article

Accurate gene consensus at low nanopore coverage.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac102

By:

Espada, Rocío;
Zarevski, Nikola;
Dramé-Maigné, Adèle;
Rondelez, Yannick

Publication type:

Article

Alignstein: Optimal transport for improved LC-MS retention time alignment.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac101

By:

Skoraczyński, Grzegorz;
Gambin, Anna;
Miasojedow, Błażej

Publication type:

Article

Best genome sequencing strategies for annotation of complex immune gene families in wildlife.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac100

By:

Peel, Emma;
Silver, Luke;
Brandies, Parice;
Zhu, Ying;
Cheng, Yuanyuan;
Hogg, Carolyn J;
Belov, Katherine

Publication type:

Article

annotate_my_genomes: an easy-to-use pipeline to improve genome annotation and uncover neglected genes by hybrid RNA sequencing.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac099

By:

Farkas, Carlos;
Recabal, Antonia;
Mella, Andy;
Candia-Herrera, Daniel;
Olivero, Maryori González;
Haigh, Jody Jonathan;
Tarifeño-Saldivia, Estefanía;
Caprile, Teresa

Publication type:

Article

High-quality genome assemblies from key Hawaiian coral species.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac098

By:

Stephens, Timothy G;
Lee, JunMo;
Jeong, YuJin;
Yoon, Hwan Su;
Putnam, Hollie M;
Majerová, Eva;
Bhattacharya, Debashish

Publication type:

Article

Disease classification for whole-blood DNA methylation: Meta-analysis, missing values imputation, and XAI.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac097

By:

Kalyakulina, Alena;
Yusipov, Igor;
Bacalini, Maria Giulia;
Franceschi, Claudio;
Vedunova, Maria;
Ivanchenko, Mikhail

Publication type:

Article

Discovery of druggable cancer-specific pathways with application in acute myeloid leukemia.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac091

By:

Trac, Quang Thinh;
Zhou, Tingyou;
Pawitan, Yudi;
Vu, Trung Nghia

Publication type:

Article

A dataset of ant colonies' motion trajectories in indoor and outdoor scenes to study clustering behavior.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac096

By:

Wu, Meihong;
Cao, Xiaoyan;
Yang, Ming;
Cao, Xiaoyu;
Guo, Shihui

Publication type:

Article

High temporal resolution Nanopore sequencing dataset of SARS-CoV-2 and host cell RNAs.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac094

By:

Tombácz, Dóra;
Dörmő, Ákos;
Gulyás, Gábor;
Csabai, Zsolt;
Prazsák, István;
Kakuk, Balázs;
Harangozó, Ákos;
Jankovics, István;
Dénes, Béla;
Boldogkői, Zsolt

Publication type:

Article

BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac093

By:

Moraga, Carol;
Sanchez, Evelyn;
Ferrarini, Mariana Galvão;
Gutierrez, Rodrigo A;
Vidal, Elena A;
Sagot, Marie-France

Publication type:

Article

A virtual library for behavioral performance in standard conditions—rodent spontaneous activity in an open field during repeated testing and after treatment with drugs or brain lesions.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac092

By:

Szechtman, Henry;
Dvorkin-Gheva, Anna;
Gomez-Marin, Alex

Publication type:

Article

Clonality, inbreeding, and hybridization in two extremotolerant black yeasts.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac095

By:

Gostinčar, Cene;
Sun, Xiaohuan;
Černoša, Anja;
Fang, Chao;
Gunde-Cimerman, Nina;
Song, Zewei

Publication type:

Article

Chromosome-level genome assembly for the Aldabra giant tortoise enables insights into the genetic health of a threatened population.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac090

By:

Çilingir, F Gözde;
A'Bear, Luke;
Hansen, Dennis;
Davis, Leyla R;
Bunbury, Nancy;
Ozgul, Arpat;
Croll, Daniel;
Grossen, Christine

Publication type:

Article

Comparative maternal protein profiling of mouse biparental and uniparental embryos.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac084

By:

Chen, Fumei;
Ma, Buguo;
Lin, Yongda;
Luo, Xin;
Xu, Tao;
Zhang, Yuan;
Chen, Fang;
Li, Yanfei;
Zhang, Yaoyao;
Luo, Bin;
Zhang, Qingmei;
Xie, Xiaoxun

Publication type:

Article

Karyon: a computational framework for the diagnosis of hybrids, aneuploids, and other nonstandard architectures in genome assemblies.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac088

By:

Naranjo-Ortiz, Miguel A;
Molina, Manu;
Fuentes, Diego;
Mixão, Verónica;
Gabaldón, Toni

Publication type:

Article

SYNPRED: prediction of drug combination effects in cancer using different synergy metrics and ensemble learning.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac087

By:

Preto, António J;
Matos-Filipe, Pedro;
Mourão, Joana;
Moreira, Irina S

Publication type:

Article

d-StructMAn: Containerized structural annotation on the scale from genetic variants to whole proteomes.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac086

By:

Gress, Alexander;
Srikakulam, Sanjay K;
Keller, Sebastian;
Ramensky, Vasily;
Kalinina, Olga V

Publication type:

Article

Identification of candidate sex‐specific genomic regions in male and female Asian arowana genomes.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac085

By:

Mu, Xidong;
Liu, Yi;
Liu, Chao;
Zhao, Chenxi;
Li, Ruihan;
You, Xinxin;
Yang, Yexin;
Wang, Xuejie;
Hu, Yinchang;
Shi, Qiong;
Bian, Chao

Publication type:

Article

CORAL: A framework for rigorous self-validated data modeling and integrative, reproducible data analysis.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac089

By:

Novichkov, Pavel S;
Chandonia, John-Marc;
Arkin, Adam P

Publication type:

Article

A curated human cellular microRNAome based on 196 primary cell types.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac083

By:

Patil, Arun H;
Baran, Andrea;
Brehm, Zachary P;
McCall, Matthew N;
Halushka, Marc K

Publication type:

Article

Statistical quantification of confounding bias in machine learning models.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac082

By:

Spisak, Tamas

Publication type:

Article

The Pioneer Advantage: Filling the blank spots on the map of genome diversity in Europe.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac081

By:

Oleksyk, Taras K;
Wolfsberger, Walter W;
Schubelka, Khrystyna;
Mangul, Serghei;
O'Brien, Stephen J

Publication type:

Article

Association mapping across a multitude of traits collected in diverse environments in maize.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac080

By:

Mural, Ravi V;
Sun, Guangchao;
Grzybowski, Marcin;
Tross, Michael C;
Jin, Hongyu;
Smith, Christine;
Newton, Linsey;
Andorf, Carson M;
Woodhouse, Margaret R;
Thompson, Addie M;
Sigmon, Brandi;
Schnable, James C

Publication type:

Article

The complexity landscape of viral genomes.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac079

By:

Silva, Jorge Miguel;
Pratas, Diogo;
Caetano, Tânia;
Matos, Sérgio

Publication type:

Article

Evolution of complex genome architecture in gymnosperms.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac078

By:

Wan, Tao;
Gong, Yanbing;
Liu, Zhiming;
Zhou, YaDong;
Dai, Can;
Wang, Qingfeng

Publication type:

Article

A machine learning framework for discovery and enrichment of metagenomics metadata from open access publications.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac077

By:

Nassar, Maaly;
Rogers, Alexander B;
Talo', Francesco;
Sanchez, Santiago;
Shafique, Zunaira;
Finn, Robert D;
McEntyre, Johanna

Publication type:

Article

DeePVP: Identification and classification of phage virion proteins using deep learning.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac076

By:

Fang, Zhencheng;
Feng, Tao;
Zhou, Hongwei;
Chen, Muxuan

Publication type:

Article

Stardust: improving spatial transcriptomics data analysis through space-aware modularity optimization-based clustering.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac075

By:

Avesani, Simone;
Viesi, Eva;
Alessandrì, Luca;
Motterle, Giovanni;
Bonnici, Vincenzo;
Beccuti, Marco;
Calogero, Raffaele;
Giugno, Rosalba

Publication type:

Article

Quantifying research interests in 7,521 mammalian species with h-index: a case study.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac074

By:

Tam, Jessica;
Lagisz, Malgorzata;
Cornwell, Will;
Nakagawa, Shinichi

Publication type:

Article

Meta-Prism 2.0: Enabling algorithm and web server for ultra-fast, memory-efficient, and accurate analysis among millions of microbial community samples.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac073

By:

Kang, Kai;
Chong, Hui;
Ning, Kang

Publication type:

Article

Antibiotic resistance genes are differentially mobilized according to resistance mechanism.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac072

By:

Nielsen, Tue Kjærgaard;
Browne, Patrick Denis;
Hansen, Lars Hestbjerg

Publication type:

Article

SurvBenchmark: comprehensive benchmarking study of survival analysis methods using both omics data and clinical data.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac071

By:

Zhang, Yunwei;
Wong, Germaine;
Mann, Graham;
Muller, Samuel;
Yang, Jean Y H

Publication type:

Article