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Quantitative analysis of the naringenin-inducible proteome in Rhizobium leguminosarum by isobaric tagging and mass spectrometry.
- Published in:
- Proteomics, 2013, v. 13, n. 12/13, p. 1961, doi. 10.1002/pmic.201200472
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- Article
Mining of miRNAs and potential targets from gene oriented clusters of transcripts sequences of the anti-malarial plant, Artemisia annua.
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- Biotechnology Letters, 2012, v. 34, n. 4, p. 737, doi. 10.1007/s10529-011-0808-0
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- Article
Genome-wide survey of alternative splicing in the grass Brachypodium distachyon: a emerging model biosystem for plant functional genomics.
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- Biotechnology Letters, 2011, v. 33, n. 3, p. 629, doi. 10.1007/s10529-010-0475-6
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- Article
The Evolutionary Basis of Translational Accuracy in Plants.
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- G3: Genes | Genomes | Genetics, 2017, v. 7, n. 7, p. 2363, doi. 10.1534/g3.117.040626
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- Article
The Genome of a Southern Hemisphere Seagrass Species (Zostera muelleri).
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- Plant Physiology, 2016, v. 172, n. 1, p. 272, doi. 10.1104/pp.16.00868
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- Article
Genome-wide cataloging and analysis of alternatively spliced genes in cereal crops.
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- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1914-5
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- Article
Plastome organization and evolution of chloroplast genes in Cardamine species adapted to contrasting habitats.
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- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1498-0
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- Article
Plastome organization and evolution of chloroplast genes in Cardamine species adapted to contrasting habitats.
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- BMC Genomics, 2015, v. 16, n. 1, p. 306, doi. 10.1186/s12864-015-1498-0
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- Article
Review: role of carbon sources for in vitro plant growth and development.
- Published in:
- Molecular Biology Reports, 2013, v. 40, n. 4, p. 2837, doi. 10.1007/s11033-012-2299-z
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- Article
Fuelling genetic and metabolic exploration of C<sub>3</sub> bioenergy crops through the first reference transcriptome of Arundo donax L.
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- Plant Biotechnology Journal, 2014, v. 12, n. 5, p. 554, doi. 10.1111/pbi.12159
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- Publication type:
- Article
miRTar2GO: a novel rule-based model learning method for cell line specific microRNA target prediction that integrates Ago2 CLIP-Seq and validated microRNA--target interaction data.
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- Nucleic Acids Research, 2017, v. 45, n. 6, p. 1, doi. 10.1093/nar/gkw1185
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- Publication type:
- Article
Bacterial-induced expression of RAB18 protein in Orzya sativa salinity stress and insights into molecular interaction with GTP ligand.
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- Journal of Molecular Recognition, 2014, v. 27, n. 9, p. 521, doi. 10.1002/jmr.2371
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- Article
Phylogenomic discordance suggests polytomies along the backbone of the large genus Solanum.
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- American Journal of Botany, 2022, v. 109, n. 4, p. 580, doi. 10.1002/ajb2.1827
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- Article
Investigating the Conformational Structure and Potential Site Interactions of SOD Inhibitors on Ec-SOD in Marine Mud Crab Scylla serrata: A Molecular Modeling Approach.
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- Interdisciplinary Sciences: Computational Life Sciences, 2016, v. 8, n. 3, p. 312, doi. 10.1007/s12539-015-0110-2
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- Article
In silico identification and characterization of a diverse subset of conserved microRNAs in bioenergy crop Arundo donax L.
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- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-34982-8
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- Article
PlantFuncSSR: Integrating First and Next Generation Transcriptomics for Mining of SSR-Functional Domains Markers.
- Published in:
- Frontiers in Plant Science, 2016, p. 1, doi. 10.3389/fpls.2016.00878
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- Publication type:
- Article
Suppression Substractive Hybridization and NGS Reveal Differential Transcriptome Expression Profiles in Wayfaring Tree (Viburnum lantana L.) Treated with Ozone.
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- Frontiers in Plant Science, 2016, p. 1, doi. 10.3389/fpls.2016.00713
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- Article
isomiRs: Increasing Evidences of isomiRs Complexity in Plant Stress Functional Biology.
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- 2015
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- Publication type:
- Opinion
Transcriptomics profiling of Indian mustard (Brassica juncea) under arsenate stress identifies key candidate genes and regulatory pathways.
- Published in:
- Frontiers in Plant Science, 2015, p. 1, doi. 10.3389/fpls.2015.00646
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- Publication type:
- Article
Marine Viruses: the Beneficial Side of a Threat.
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- Applied Biochemistry & Biotechnology, 2014, v. 174, n. 7, p. 2368, doi. 10.1007/s12010-014-1194-6
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- Publication type:
- Article
Diff isomiRs: Large-scale detection of differential isomiRs for understanding non-coding regulated stress omics in plants.
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- Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-38932-w
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- Publication type:
- Article
Draft Genome Sequence of the Nitrogen-Fixing Rhizobium sullae Type Strain IS123T Focusing on the Key Genes for Symbiosis with its Host Hedysarum coronarium L.
- Published in:
- Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01348
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- Article
SBMDb: first whole genome putative microsatellite DNA marker database of sugarbeet for bioenergy and industrial applications.
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- Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav111
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- Publication type:
- Article
ChloroMitoSSRDB 2.00: more genomes, more repeats, unifying SSRs search patterns and on-the-fly repeat detection.
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- Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav084
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- Publication type:
- Article
The emergence of molecular profiling and omics techniques in seagrass biology; furthering our understanding of seagrasses.
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- Functional & Integrative Genomics, 2016, v. 16, n. 5, p. 465, doi. 10.1007/s10142-016-0501-4
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- Article
Integrative analysis of Arabidopsis thaliana transcriptomics reveals intuitive splicing mechanism for circular RNA.
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- FEBS Letters, 2016, v. 590, n. 20, p. 3510, doi. 10.1002/1873-3468.12440
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- Publication type:
- Article
nagnag: Identification and quantification of NAGNAG alternative splicing using RNA-Seq data.
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- FEBS Letters, 2015, v. 589, n. 15, p. 1766, doi. 10.1016/j.febslet.2015.05.029
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- Publication type:
- Article
isomiRex: Web-based identification of microRNAs, isomiR variations and differential expression using next-generation sequencing datasets.
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- FEBS Letters, 2013, v. 587, n. 16, p. 2629, doi. 10.1016/j.febslet.2013.06.047
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- Article
Exploring the phylogeny of the marattialean ferns.
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- Cladistics, 2020, v. 36, n. 6, p. 569, doi. 10.1111/cla.12419
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- Publication type:
- Article
Bioinformatic analysis of fruit-specific expressed sequence tag libraries of Diospyros kaki Thunb.: view at the transcriptome at different developmental stages.
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- 3 Biotech, 2011, v. 1, n. 1, p. 35, doi. 10.1007/s13205-011-0005-9
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- Article
Expression properties exhibit correlated patterns with the fate of duplicated genes, their divergence, and transcriptional plasticity in Saccharomycotina.
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- DNA Research, 2017, v. 24, n. 6, p. 559, doi. 10.1093/dnares/dsx025
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- Article
ChloroMitoCU: Codon patterns across organelle genomes for functional genomics and evolutionary applications.
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- DNA Research, 2017, v. 24, n. 3, p. 327, doi. 10.1093/dnares/dsw044
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- Publication type:
- Article
Genome-Wide Landscape of Alternative Splicing Events in Brachypodium distachyon.
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- DNA Research, 2013, v. 20, n. 2, p. 163, doi. 10.1093/dnares/dss041
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- Publication type:
- Article
Evaluation of Codon Biology in Citrus and Poncirus trifoliata Based on Genomic Features and Frame Corrected Expressed Sequence Tags.
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- DNA Research, 2013, v. 20, n. 2, p. 135, doi. 10.1093/dnares/dss039
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- Article
ChloroMitoSSRDB: Open Source Repository of Perfect and Imperfect Repeats in Organelle Genomes for Evolutionary Genomics.
- Published in:
- DNA Research, 2013, v. 20, n. 2, p. 127, doi. 10.1093/dnares/dss038
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- Article
Comparative assessment of chloroplast transcriptional responses highlights conserved and unique patterns across Triticeae members under salt stress.
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- Photosynthesis Research, 2018, v. 136, n. 3, p. 357, doi. 10.1007/s11120-017-0469-5
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- Article
Sequencing the Plastid Genome of Giant Ragweed (Ambrosia trifida , Asteraceae) From a Herbarium Specimen.
- Published in:
- Frontiers in Plant Science, 2019, p. N.PAG, doi. 10.3389/fpls.2019.00218
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- Publication type:
- Article
Plant IsomiR Atlas: Large Scale Detection, Profiling, and Target Repertoire of IsomiRs in Plants.
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- Frontiers in Plant Science, 2019, p. N.PAG, doi. 10.3389/fpls.2018.01881
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- Article
Microenvironment and phylogenetic diversity of P rochloron inhabiting the surface of crustose didemnid ascidians.
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- Environmental Microbiology, 2015, v. 17, n. 10, p. 4121, doi. 10.1111/1462-2920.12983
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- Publication type:
- Article
Dissection of early transcriptional responses to water stress in Arundo donax L. by unigene-based RNA-seq.
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- Biotechnology for Biofuels, 2016, v. 9, p. 2, doi. 10.1186/s13068-016-0471-8
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- Publication type:
- Article
Altools: a user friendly NGS data analyser.
- Published in:
- Biology Direct, 2016, v. 11, p. 1, doi. 10.1186/s13062-016-0110-0
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- Article
Identification of Low Temperature Stress Regulated Transcript Sequences and Gene Families in Italian Cypress.
- Published in:
- Molecular Biotechnology, 2015, v. 57, n. 5, p. 407, doi. 10.1007/s12033-014-9833-2
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- Article
Synonymous Codon Usage, GC, and Evolutionary Patterns Across Plastomes of Three Pooid Model Species: Emerging Grass Genome Models for Monocots.
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- Molecular Biotechnology, 2011, v. 49, n. 2, p. 116, doi. 10.1007/s12033-011-9383-9
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- Article
Genome dynamics in three different geographical isolates of white spot syndrome virus (WSSV).
- Published in:
- 2012
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- Publication type:
- Report
AtCircDB: a tissue-specific database for Arabidopsis circular RNAs.
- Published in:
- Briefings in Bioinformatics, 2019, v. 20, n. 1, p. 58, doi. 10.1093/bib/bbx089
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- Article
Emerging Roles and Landscape of Translating mRNAs in Plants.
- Published in:
- Frontiers in Plant Science, 2017, p. 1, doi. 10.3389/fpls.2017.01443
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- Publication type:
- Article
tRNA Derived smallRNAs: smallRNAs Repertoire Has Yet to Be Decoded in Plants.
- Published in:
- Frontiers in Plant Science, 2017, p. 1, doi. 10.3389/fpls.2017.01167
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- Article
isomiR2Function: An Integrated Workflow for Identifying MicroRNA Variants in Plants.
- Published in:
- Frontiers in Plant Science, 2017, v. 8, p. 1, doi. 10.3389/fpls.2017.00322
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- Publication type:
- Article
Chloroplast Genome Analysis of Resurrection Tertiary Relict Haberlea rhodopensis Highlights Genes Important for Desiccation Stress Response.
- Published in:
- Frontiers in Plant Science, 2017, v. 8, p. 1, doi. 10.3389/fpls.2017.00204
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- Publication type:
- Article
Phylogenomic proof of Recurrent Demipolyploidization and Evolutionary Stalling of the "Triploid Bridge" in Arundo (Poaceae).
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- International Journal of Molecular Sciences, 2020, v. 21, n. 15, p. 5247, doi. 10.3390/ijms21155247
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- Article