Works matching IS 17580463 AND DT 2020 AND VI 2020

Results: 132

GREG—studying transcriptional regulation using integrative graph databases.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz162

By:

Mei, Songqing;
Huang, Xiaowei;
Xie, Chengshu;
Mora, Antonio

Publication type:

Article

Prot2HG: a database of protein domains mapped to the human genome.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz161

By:

Stanek, David;
Bis-Brewer, Dana M;
Saghira, Cima;
Danzi, Matt C;
Seeman, Pavel;
Lassuthova, Petra;
Zuchner, Stephan

Publication type:

Article

An update on the Symbiotic Genomes Database (SymGenDB): a collection of metadata, genomic, genetic and protein sequences, orthologs and metabolic networks of symbiotic organisms.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz160

By:

Reyes-Prieto, Mariana;
Vargas-Chávez, Carlos;
Llabrés, Mercè;
Palmer, Pere;
Latorre, Amparo;
Moya, Andrés

Publication type:

Article

NipahVR: a resource of multi-targeted putative therapeutics and epitopes for the Nipah virus.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz159

By:

Gupta, Amit Kumar;
Kumar, Archit;
Rajput, Akanksha;
Kaur, Karambir;
Dar, Showkat Ahmed;
Thakur, Anamika;
Megha, Kirti;
Kumar, Manoj

Publication type:

Article

A negative storage model for precise but compact storage of genetic variation data.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz158

By:

Gonzalez-Calderon, Guillermo;
Liu, Ruizheng;
Carvajal, Rodrigo;
Teer, Jamie K

Publication type:

Article

RESTful API for iPTMnet: a resource for protein post-translational modification network discovery.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz157

By:

Gavali, Sachin;
Cowart, Julie;
Chen, Chuming;
Ross, Karen E;
Arighi, Cecilia;
Wu, Cathy H

Publication type:

Article

RBPTD: a database of cancer-related RNA-binding proteins in humans.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz156

By:

Li, Kun;
Guo, Zhi-Wei;
Zhai, Xiang-Ming;
Yang, Xue-Xi;
Wu, Ying-Song;
Liu, Tian-Cai

Publication type:

Article

PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz155

By:

Banchi, Elisa;
Ametrano, Claudio G;
Greco, Samuele;
Stanković, David;
Muggia, Lucia;
Pallavicini, Alberto

Publication type:

Article

RNA CoSSMos 2.0: an improved searchable database of secondary structure motifs in RNA three-dimensional structures.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz153

By:

Richardson, Katherine E;
Kirkpatrick, Charles C;
Znosko, Brent M

Publication type:

Article

Building a pipeline to solicit expert knowledge from the community to aid gene summary curation.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz152

By:

Antonazzo, Giulia;
Urbano, Jose M;
Marygold, Steven J;
Millburn, Gillian H;
Brown, Nicholas H

Publication type:

Article

LeukmiR: a database for miRNAs and their targets in acute lymphoblastic leukemia.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz151

By:

Rawoof, Abdul;
Swaminathan, Guruprasadh;
Tiwari, Shrish;
Nair, Rekha A;
Kumar, Lekha Dinesh

Publication type:

Article

Annotation and curation of the causality information in LncRNADisease.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz150

By:

Jia, Kaiwen;
Gao, Yuanxu;
Shi, Jiangcheng;
Zhou, Yuan;
Zhou, Yong;
Cui, Qinghua

Publication type:

Article

WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz149

By:

Snoek, Basten L;
Sterken, Mark G;
Hartanto, Margi;
Zuilichem, Albert-Jan van;
Kammenga, Jan E;
Ridder, Dick de;
Nijveen, Harm

Publication type:

Article

miR-TV: an interactive microRNA Target Viewer for microRNA and target gene expression interrogation for human cancer studies.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz148

By:

Pan, Chao-Yu;
Lin, Wen-Chang

Publication type:

Article

Phenotype–genotype network construction and characterization: a case study of cardiovascular diseases and associated non-coding RNAs.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz147

By:

Wu, Rongrong;
Lin, Yuxin;
Liu, Xingyun;
Zhan, Chaoying;
He, Hongxin;
Shi, Manhong;
Jiang, Zhi;
Shen, Bairong

Publication type:

Article

KRGDB: the large-scale variant database of 1722 Koreans based on whole genome sequencing.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz146

By:

Jung, Kwang Su;
Hong, Kyung-Won;
Jo, Hyun Youn;
Choi, Jongpill;
Ban, Hyo-Jeong;
Cho, Seong Beom;
Chung, Myungguen

Publication type:

Article

Strengthening of banana breeding through data digitalization.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz145

By:

Kumar, B Vignesh;
Backiyarani, S;
Chandrasekar, A;
Saranya, S;
Ramajayam, D;
Saraswathi, M S;
Durai, P;
Kalpana, S;
Uma, S

Publication type:

Article

Ewé: a web-based ethnobotanical database for storing and analysing data.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz144

By:

Souza, Estevão do Nascimento Fernandes de;
Hawkins, Julie A

Publication type:

Article

Tripal EUtils: a Tripal module to increase exchange and reuse of genome assembly metadata.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz143

By:

Condon, B;
Almsaeed, A;
Buehler, S;
Childers, C P;
Ficklin, S P;
Staton, M E;
Poelchau, M F

Publication type:

Article

ChIPSummitDB: a ChIP-seq-based database of human transcription factor binding sites and the topological arrangements of the proteins bound to them.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz141

By:

Czipa, Erik;
Schiller, Mátyás;
Nagy, Tibor;
Kontra, Levente;
Steiner, László;
Koller, Júlia;
Pálné-Szén, Orsolya;
Barta, Endre

Publication type:

Article

Human Breathomics Database.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz139

By:

Kuo, Tien-Chueh;
Tan, Cheng-En;
Wang, San-Yuan;
Lin, Olivia A;
Su, Bo-Han;
Hsu, Ming-Tsung;
Lin, Jessica;
Cheng, Yu-Yen;
Chen, Ciao-Sin;
Yang, Yu-Chieh;
Chen, Kuo-Hsing;
Lin, Shu-Wen;
Ho, Chao-Chi;
Kuo, Ching-Hua;
Tseng, Yufeng Jane

Publication type:

Article

Erratum to: Large expert-curated database for benchmarking document similarity detection in biomedical literature search.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz138

By:

Brown, Peter;
Consortium, RELISH;
Zhou, Yaoqi

Publication type:

Article

Bio-AnswerFinder: a system to find answers to questions from biomedical texts.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz137

By:

Ozyurt, Ibrahim Burak;
Bandrowski, Anita;
Grethe, Jeffrey S

Publication type:

Article

Variation benchmark datasets: update, criteria, quality and applications.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz117

By:

Sarkar, Anasua;
Yang, Yang;
Vihinen, Mauno

Publication type:

Article

HeartBioPortal2.0: new developments and updates for genetic ancestry and cardiometabolic quantitative traits in diverse human populations.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa115

By:

Khomtchouk, Bohdan B;
Nelson, Christopher S;
Vand, Kasra A;
Palmisano, Salvator;
Grossman, Robert L

Publication type:

Article

CorkOakDB—The Cork Oak Genome Database Portal.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa114

By:

Arias-Baldrich, Cirenia;
Silva, Marta Contreiras;
Bergeretti, Filippo;
Chaves, Inês;
Miguel, Célia;
Saibo, Nelson J M;
Sobral, Daniel;
Faria, Daniel;
Barros, Pedro M

Publication type:

Article

CEG 2.0: an updated database of clusters of essential genes including eukaryotic organisms.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa112

By:

Liu, Shuo;
Wang, Shu-Xuan;
Liu, Wei;
Wang, Chen;
Zhang, Fa-Zhan;
Ye, Yuan-Nong;
Wu, Candy-S;
Zheng, Wen-Xin;
Rao, Nini;
Guo, Feng-Biao

Publication type:

Article

MuscleAtlasExplorer: a web service for studying gene expression in human skeletal muscle.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa111

By:

Asplund, Olof;
Rung, Johan;
Groop, Leif;
B, Rashmi Prasad;
Hansson, Ola

Publication type:

Article

Applying graph database technology for analyzing perturbed co-expression networks in cancer.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa110

By:

Simpson, Claire M;
Gnad, Florian

Publication type:

Article

Knowledge extraction for assisted curation of summaries of bacterial transcription factor properties.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa109

By:

Méndez-Cruz, Carlos-Francisco;
Blanchet, Antonio;
Godínez, Alan;
Arroyo-Fernández, Ignacio;
Gama-Castro, Socorro;
Martínez-Luna, Sara Berenice;
González-Colín, Cristian;
Collado-Vides, Julio

Publication type:

Article

Novel methods included in SpolLineages tool for fast and precise prediction of Mycobacterium tuberculosis complex spoligotype families.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa108

By:

Couvin, David;
Segretier, Wilfried;
Stattner, Erick;
Rastogi, Nalin

Publication type:

Article

RegulomePA: a database of transcriptional regulatory interactions in Pseudomonas aeruginosa PAO1.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa106

By:

Galán-Vásquez, Edgardo;
Luna-Olivera, Beatriz Carely;
Ramírez-Ibáñez, Marcelino;
Martínez-Antonio, Agustino

Publication type:

Article

ncVarDB: a manually curated database for pathogenic non-coding variants and benign controls.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa105

By:

Biggs, Harry;
Parthasarathy, Padmini;
Gavryushkina, Alexandra;
Gardner, Paul P

Publication type:

Article

A hybrid approach toward biomedical relation extraction training corpora: combining distant supervision with crowdsourcing.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa104

By:

Sousa, Diana;
Lamurias, Andre;
Couto, Francisco M

Publication type:

Article

Creating a Metabolic Syndrome Research Resource using the National Health and Nutrition Examination Survey.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa103

By:

Jenkins, Willysha S;
Richardson, Christian;
Williams, Ariel;
Williams-DeVane, Clarlynda R

Publication type:

Article

NPBS database: a chemical data resource with relational data between natural products and biological sources.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa102

By:

Xu, Tingjun;
Chen, Weiming;
Zhou, Junhong;
Dai, Jingfang;
Li, Yingyong;
Zhao, Yingli

Publication type:

Article

HAHmiR.DB: a server platform for high-altitude human miRNA–gene coregulatory networks and associated regulatory circuits.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa101

By:

Khurana, Pankaj;
Gupta, Apoorv;
Sugadev, Ragumani;
Sharma, Yogendra Kumar;
Kumar, Bhuvnesh

Publication type:

Article

MetaTropismDB: a database of organ-specific metastasis induced by human cancer cell lines in mouse models.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa100

By:

Giulietti, Matteo;
Bastianoni, Marco;
Cecati, Monia;
Ruzzo, Annamaria;
Bracci, Massimo;
Malavolta, Marco;
Piacenza, Francesco;
Giacconi, Robertina;
Piva, Francesco

Publication type:

Article

TopoDB: a novel multifunctional management system for laboratory animal colonies.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa098

By:

Renschen, Adam;
Matsunaga, Atsuko;
Oksenberg, Jorge R;
Santaniello, Adam;
Didonna, Alessandro

Publication type:

Article

OGDA: a comprehensive organelle genome database for algae.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa097

By:

Liu, Tao;
Cui, Yutong;
Jia, Xuli;
Zhang, Jing;
Li, Ruoran;
Yu, Yahui;
Jia, Shangang;
Qu, Jiangyong;
Wang, Xumin

Publication type:

Article

The IMEx coronavirus interactome: an evolving map of Coronaviridae–host molecular interactions.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa096

By:

Perfetto, L;
Pastrello, C;
del-Toro, N;
Duesbury, M;
Iannuccelli, M;
Kotlyar, M;
Licata, L;
Meldal, B;
Panneerselvam, K;
Panni, S;
Rahimzadeh, N;
Ricard-Blum, S;
Salwinski, L;
Shrivastava, A;
Cesareni, G;
Pellegrini, M;
Orchard, S;
Jurisica, I;
Hermjakob, H;
Porras, P

Publication type:

Article

STOREFISH 2.0: a database on the reproductive strategies of teleost fishes.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa095

By:

Teletchea, Stéphane;
Teletchea, Fabrice

Publication type:

Article

KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa093

By:

Mochão, Hugo;
Barahona, Pedro;
Costa, Rafael S

Publication type:

Article

VarStack: a web tool for data retrieval to interpret somatic variants in cancer.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa092

By:

Howard, Morgan;
Kane, Bruce;
Lepry, Mary;
Stey, Paul;
Ragavendran, Ashok;
Uzun, Ece D Gamsiz

Publication type:

Article

BarleyVarDB: a database of barley genomic variation.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa091

By:

Tan, Cong;
Chapman, Brett;
Wang, Penghao;
Zhang, Qisen;
Zhou, Gaofeng;
Zhang, Xiao-qi;
Barrero, Roberto A;
Bellgard, Matthew I;
Li, Chengdao

Publication type:

Article

WGVD: an integrated web-database for wheat genome variation and selective signatures.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa090

By:

Wang, Jierong;
Fu, Weiwei;
Wang, Rui;
Hu, Dexiang;
Cheng, Hong;
Zhao, Jing;
Jiang, Yu;
Kang, Zhensheng

Publication type:

Article

DPL: a comprehensive database on sequences, structures, sources and functions of peptide ligands.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa089

By:

Wang, Fangyu;
Li, Ning;
Wang, Chunfeng;
Xing, Guangxu;
Cao, Shuai;
Xu, Qian;
Zhang, Yunshang;
Hu, Man;
Zhang, Gaiping

Publication type:

Article

CRISPR sequences are sometimes erroneously translated and can contaminate public databases with spurious proteins containing spaced repeats.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa088

By:

Rubio, Alejandro;
Mier, Pablo;
Andrade-Navarro, Miguel A;
Garzón, Andrés;
Jiménez, Juan;
Pérez-Pulido, Antonio J

Publication type:

Article

GPCR-PEnDB: a database of protein sequences and derived features to facilitate prediction and classification of G protein-coupled receptors.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa087

By:

Begum, Khodeza;
Mohl, Jonathon E;
Ayivor, Fredrick;
Perez, Eder E;
Leung, Ming-Ying

Publication type:

Article

Predicted rat interactome database and gene set linkage analysis.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa086

By:

Tao, Yu-Tian;
Ding, Xiao-Bao;
Jin, Jie;
Zhang, Hai-Bo;
Guo, Wen-Ping;
Ruan, Li;
Yang, Qiao-Lei;
Chen, Peng-Cheng;
Yao, Heng;
Chen, Xin

Publication type:

Article