Works matching AU Ramette, Alban

Results: 75

Biogeography: An Emerging Cornerstone for Understanding Prokaryotic Diversity, Ecology, and Evolution.

Published in:

Microbial Ecology, 2007, v. 53, n. 2, p. 197, doi. 10.1007/s00248-005-5010-2

By:

Ramette, Alban;
Tiedje, James M.

Publication type:

Article

Rapid and Cost-Efficient Enterovirus Genotyping from Clinical Samples Using Flongle Flow Cells.

Published in:

Genes, 2019, v. 10, n. 9, p. 659, doi. 10.3390/genes10090659

By:

Grädel, Carole;
Terrazos Miani, Miguel Angel;
Barbani, Maria Teresa;
Leib, Stephen L;
Suter-Riniker, Franziska;
Ramette, Alban

Publication type:

Article

Viral Metagenomics in the Clinical Realm: Lessons Learned from a Swiss-Wide Ring Trial.

Published in:

Genes, 2019, v. 10, n. 9, p. 655, doi. 10.3390/genes10090655

By:

Junier, Thomas;
Huber, Michael;
Schmutz, Stefan;
Kufner, Verena;
Zagordi, Osvaldo;
Neuenschwander, Stefan;
Ramette, Alban;
Kubacki, Jakub;
Bachofen, Claudia;
Qi, Weihong;
Laubscher, Florian;
Cordey, Samuel;
Kaiser, Laurent;
Beuret, Christian;
Barbié, Valérie;
Fellay, Jacques;
Lebrand, Aitana

Publication type:

Article

Minor impacts of reduced pH on bacterial biofilms on settlement tiles along natural pH gradients at two CO<sub>2</sub> seeps in Papua New Guinea.

Published in:

ICES Journal of Marine Science / Journal du Conseil, 2017, v. 74, n. 4, p. 978, doi. 10.1093/icesjms/fsw204

By:

Hassenrück, Christiane;
Tegetmeyer, Halina E.;
Ramette, Alban;
Fabricius, Katharina E.

Publication type:

Article

Air Cleaners and Respiratory Infections in Schools: A Modeling Study Based on Epidemiologic, Environmental, and Molecular Data.

Published in:

Open Forum Infectious Diseases, 2024, v. 11, n. 4, p. 1, doi. 10.1093/ofid/ofae169

By:

Banholzer, Nicolas;
Jent, Philipp;
Bittel, Pascal;
Zürcher, Kathrin;
Furrer, Lavinia;
Bertschinger, Simon;
Weingartner, Ernest;
Ramette, Alban;
Egger, Matthias;
Hascher, Tina;
Fenner, Lukas

Publication type:

Article

Recurrent Mycobacterium chelonae Skin Infection Unmasked as Factitious Disorder Using Bacterial Whole Genome Sequence Analysis.

Published in:

Open Forum Infectious Diseases, 2020, v. 7, n. 11, p. 1, doi. 10.1093/ofid/ofaa506

By:

Flohr, Sarah;
Ramette, Alban;
Agyeman, Philipp K A;
Duppenthaler, Andrea;
Scherer, Cordula;
Keller, Peter M;
Aebi, Christoph

Publication type:

Article

Genomic analyses of human adenoviruses unravel novel recombinant genotypes associated with severe infections in pediatric patients.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-03445-y

By:

Akello, Joyce Odeke;
Kamgang, Richard;
Barbani, Maria Teresa;
Suter-Riniker, Franziska;
Aebi, Christoph;
Beuret, Christian;
Paris, Daniel H.;
Leib, Stephen L.;
Ramette, Alban

Publication type:

Article

Cytokine response in cerebrospinal fluid of meningitis patients and outcome associated with pneumococcal serotype.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-99190-3

By:

Müller, Annelies;
Schramm, Diana B.;
Kleynhans, Jackie;
de Gouveia, Linda;
Meiring, Susan;
Ramette, Alban;
von Gottberg, Anne;
Hathaway, Lucy Jane

Publication type:

Article

Ongoing toxin-positive diphtheria outbreaks in a federal asylum centre in Switzerland, analysis July to September 2022.

Published in:

Eurosurveillance (15607917), 2022, v. 27, n. 44, p. 2, doi. 10.2807/1560-7917.ES.2022.27.44.2200811

By:

Kofler, Jacob;
Ramette, Alban;
Iseli, Patricia;
Stauber, Lea;
Fichtner, Jens;
Droz, Sara;
Berner, Annina Zihler;
Meier, Anna Bettina;
Begert, Michelle;
Negri, Sabine;
Jachmann, Anne;
Keller, Peter Michael;
Staehelin, Cornelia;
Grützmacher, Barbara

Publication type:

Article

Temporal and regional incidence of carbapenemase-producing Enterobacterales, Switzerland, 2013 to 2018.

Published in:

Eurosurveillance (15607917), 2021, v. 26, n. 15, p. 1, doi. 10.2807/1560-7917.ES.2021.26.15.1900760

By:

Ramette, Alban;
Gasser, Michael;
Nordmann, Patrice;
Zbinden, Reinhard;
Schrenzel, Jacques;
Perisa, Damir;
Kronenberg, Andreas

Publication type:

Article

Biogeography of Deep-Sea Benthic Bacteria at Regional Scale (LTER HAUSGARTEN, Fram Strait, Arctic).

Published in:

PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0072779

By:

Jacob, Marianne;
Soltwedel, Thomas;
Boetius, Antje;
Ramette, Alban

Publication type:

Article

Microbial Communities of Deep-Sea Methane Seeps at Hikurangi Continental Margin (New Zealand).

Published in:

PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0072627

By:

Ruff, S. Emil;
Arnds, Julia;
Knittel, Katrin;
Amann, Rudolf;
Wegener, Gunter;
Ramette, Alban;
Boetius, Antje

Publication type:

Article

Relationships between Host Phylogeny, Host Type and Bacterial Community Diversity in Cold-Water Coral Reef Sponges.

Published in:

PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0055505

By:

Schöttner, Sandra;
Hoffmann, Friederike;
Cárdenas, Paco;
Rapp, Hans Tore;
Boetius, Antje;
Ramette, Alban

Publication type:

Article

Repeatedly Evolved Host-Specific Ectosymbioses between Sulfur-Oxidizing Bacteria and Amphipods Living in a Cave Ecosystem.

Published in:

PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0050254

By:

Bauermeister, Jan;
Ramette, Alban;
Dattagupta, Sharmishtha

Publication type:

Article

Effects of Eutrophication, Seasonality and Macrofouling on the Diversity of Bacterial Biofilms in Equatorial Coral Reefs.

Published in:

PLoS ONE, 2012, v. 7, n. 7, p. 1, doi. 10.1371/journal.pone.0039951

By:

Sawall, Yvonne;
Richter, Claudio;
Ramette, Alban

Publication type:

Article

Microbial and Chemical Characterization of Underwater Fresh Water Springs in the Dead Sea.

Published in:

PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0038319

By:

Ionescu, Danny;
Siebert, Christian;
Polerecky, Lubos;
Munwes, Yaniv Y.;
Lott, Christian;
Häusler, Stefan;
Bižić-Ionescu, Mina;
Quast, Christian;
Peplie, Jörg;
Glöckner, Frank Oliver;
Ramette, Alban;
Rödiger, Tino;
Dittmar, Thorsten;
Oren, Aharon;
Geyer, Stefan;
Stärk, Hans-Joachim;
Sauter, Martin;
Licha, Tobias;
Laronne, Jonathan B.;
de Beer, Dirk

Publication type:

Article

Spatial Scales of Bacterial Diversity in Cold-Water Coral Reef Ecosystems.

Published in:

PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0032093

By:

Schöttner, Sandra;
Wild, Christian;
Hoffmann, Friederike;
Boetius, Antje;
Ramette, Alban

Publication type:

Article

Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems.

Published in:

PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0024570

By:

Zinger, Lucie;
Amaral-Zettler, Linda A.;
Fuhrman, Jed A.;
Horner-Devine, M. Claire;
Huse, Susan M.;
Mark Welch, David B.;
Martiny, Jennifer B. H.;
Sogin, Mitchell;
Boetius, Antje;
Ramette, Alban

Publication type:

Article

Convalescent plasma and remdesivir for protracted COVID‐19 in a patient with chronic lymphocytic leukaemia: a case report of late relapse after rapid initial response.

Published in:

British Journal of Haematology, 2022, v. 196, n. 3, p. e27, doi. 10.1111/bjh.17806

By:

Schenker, Carla;
Hirzel, Cédric;
Walti, Laura N.;
Zeerleder, Sacha S.;
Andres, Martin;
Ramette, Alban;
Barbani, Maria T.;
Suter‐Riniker, Franziska;
Holbro, Andreas;
Tritschler, Tobias

Publication type:

Article

Self-reported neurocognitive complaints in the Swiss HIV Cohort Study: a viral genome-wide association study.

Published in:

Brain Communications, 2024, v. 6, n. 4, p. 1, doi. 10.1093/braincomms/fcae188

By:

Zeeb, Marius;
Pasin, Chloé;
Cavassini, Matthias;
Bieler-Aeschlimann, Mélanie;
Frischknecht, Paul;
Kusejko, Katharina;
Fellay, Jacques;
Blanquart, François;
Metzner, Karin J;
Neumann, Kathrin;
Jörimann, Lisa;
Tschumi, Jasmin;
Bernasconi, Enos;
Huber, Michael;
Kovari, Helen;
Leuzinger, Karoline;
Notter, Julia;
Perreau, Matthieu;
Rauch, Andri;
Ramette, Alban

Publication type:

Article

NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.591093

By:

Dylus, David;
Pillonel, Trestan;
Opota, Onya;
Wüthrich, Daniel;
Seth-Smith, Helena M. B.;
Egli, Adrian;
Leo, Stefano;
Lazarevic, Vladimir;
Schrenzel, Jacques;
Laurent, Sacha;
Bertelli, Claire;
Blanc, Dominique S.;
Neuenschwander, Stefan;
Ramette, Alban;
Falquet, Laurent;
Imkamp, Frank;
Keller, Peter M.;
Kahles, Andre;
Oberhaensli, Simone;
Barbié, Valérie

Publication type:

Article

Changes in microbial communities in coastal sediments along natural CO<sub>2</sub> gradients at a volcanic vent in Papua New Guinea.

Published in:

Environmental Microbiology, 2015, v. 17, n. 10, p. 3678, doi. 10.1111/1462-2920.12729

By:

Raulf, Felix F.;
Fabricius, Katharina;
Uthicke, Sven;
Beer, Dirk;
Abed, Raeid M. M.;
Ramette, Alban

Publication type:

Article

Dual symbiosis with co-occurring sulfur-oxidizing symbionts in vestimentiferan tubeworms from a Mediterranean hydrothermal vent.

Published in:

Environmental Microbiology, 2014, v. 16, n. 12, p. 3638, doi. 10.1111/1462-2920.12427

By:

Zimmermann, Judith;
Lott, Christian;
Weber, Miriam;
Ramette, Alban;
Bright, Monika;
Dubilier, Nicole;
Petersen, Jillian M.

Publication type:

Article

Ecological coherence of diversity patterns derived from classical fingerprinting and Next Generation Sequencing techniques.

Published in:

Environmental Microbiology, 2014, v. 16, n. 9, p. 2672, doi. 10.1111/1462-2920.12308

By:

Gobet, Angélique;
Boetius, Antje;
Ramette, Alban

Publication type:

Article

Distribution and in situ abundance of sulfate-reducing bacteria in diverse marine hydrocarbon seep sediments.

Published in:

Environmental Microbiology, 2012, v. 14, n. 10, p. 2689, doi. 10.1111/j.1462-2920.2012.02832.x

By:

Kleindienst, Sara;
Ramette, Alban;
Amann, Rudolf;
Knittel, Katrin

Publication type:

Article

Drivers of bacterial diversity dynamics in permeable carbonate and silicate coral reef sands from the Red Sea.

Published in:

Environmental Microbiology, 2011, v. 13, n. 7, p. 1815, doi. 10.1111/j.1462-2920.2011.02494.x

By:

Schöttner, Sandra;
Pfitzner, Barbara;
Grünke, Stefanie;
Rasheed, Mohammed;
Wild, Christian;
Ramette, Alban

Publication type:

Article

Dual symbiosis of the vent shrimp Rimicaris exoculata with filamentous gamma- and epsilonproteobacteria at four Mid-Atlantic Ridge hydrothermal vent fields.

Published in:

Environmental Microbiology, 2010, v. 12, n. 8, p. 2204, doi. 10.1111/j.1462-2920.2009.02129.x

By:

Petersen, Jillian M.;
Ramette, Alban;
Lott, Christian;
Cambon-Bonavita, Marie-Anne;
Zbinden, Magali;
Dubilier, Nicole

Publication type:

Article

High symbiont diversity in the bone-eating worm Osedax mucofloris from shallow whale-falls in the North Atlantic.

Published in:

Environmental Microbiology, 2010, v. 12, n. 8, p. 2355, doi. 10.1111/j.1462-2920.2010.02299.x

By:

Verna, Caroline;
Ramette, Alban;
Wiklund, Helena;
Dahlgren, Thomas G.;
Glover, Adrian G.;
Gaill, Françoise;
Dubilier, Nicole

Publication type:

Article

Diversity of Iron Oxidizing and Reducing Bacteria in Flow Reactors in the Äspö Hard Rock Laboratory.

Published in:

Geomicrobiology Journal, 2015, v. 32, n. 3/4, p. 207, doi. 10.1080/01490451.2014.884196

By:

Ionescu, Danny;
Heim, Christine;
Polerecky, Lubos;
Ramette, Alban;
Haeusler, Stefan;
Bizic-Ionescu, Mina;
Thiel, Volker;
de Beer, Dirk

Publication type:

Article

Spatial scales of bacterial community diversity at cold seeps (Eastern Mediterranean Sea).

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 6, p. 1306, doi. 10.1038/ismej.2014.217

By:

Pop Ristova, Petra;
Wenzhöfer, Frank;
Ramette, Alban;
Felden, Janine;
Boetius, Antje

Publication type:

Article

The energy-diversity relationship of complex bacterial communities in Arctic deep-sea sediments.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 4, p. 724, doi. 10.1038/ismej.2011.140

By:

Bienhold, Christina;
Boetius, Antje;
Ramette, Alban

Publication type:

Article

Diversity and dynamics of rare and of resident bacterial populations in coastal sands.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 3, p. 542, doi. 10.1038/ismej.2011.132

By:

Gobet, Angélique;
Böer, Simone I;
Huse, Susan M;
van Beusekom, Justus E E;
Quince, Christopher;
Sogin, Mitchell L;
Boetius, Antje;
Ramette, Alban

Publication type:

Article

Novel observations of Thiobacterium, a sulfur-storing Gammaproteobacterium producing gelatinous mats.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 8, p. 1031, doi. 10.1038/ismej.2010.23

By:

Grünke, Stefanie;
Lichtschlag, Anna;
Beer, Dirk de;
Kuypers, Marcel;
Lösekann-Behrens, Tina;
Ramette, Alban;
Boetius, Antje

Publication type:

Article

Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 6, p. 719, doi. 10.1038/ismej.2010.9

By:

Knief, Claudia;
Ramette, Alban;
Frances, Lisa;
Alonso-Blanco, Carlos;
Vorholt, Julia A.

Publication type:

Article

Investigating the Extent of Primer Dropout in SARS-CoV-2 Genome Sequences During the Early Circulation of Delta Variants.

Published in:

Frontiers in Virology, 2022, p. 1, doi. 10.3389/fviro.2022.840952

By:

Borcard, Loïc Borcard;
Gempeler, Sonja;
Miani, Miguel A. Terrazos;
Baumann, Christian;
Grädel, Carole;
Dijkman, Ronald;
Suter-Riniker, Franziska;
Leib, Stephen L.;
Bittel, Pascal;
Neuenschwander, Stefan;
Ramette, Alban

Publication type:

Article

Macroecological patterns of marine bacteria on a global scale.

Published in:

Journal of Biogeography, 2013, v. 40, n. 4, p. 800, doi. 10.1111/jbi.12034

By:

Amend, Anthony S.;
Oliver, Tom A.;
Amaral‐Zettler, Linda A.;
Boetius, Antje;
Fuhrman, Jed A.;
Horner‐Devine, M. Claire;
Huse, Susan M.;
Welch, David B. Mark;
Martiny, Adam C.;
Ramette, Alban;
Zinger, Lucie;
Sogin, Mitchell L.;
Martiny, Jennifer B. H.;
Lambshead, John

Publication type:

Article

Association between breastfeeding and eczema during childhood and adolescence: A cohort study.

Published in:

PLoS ONE, 2017, v. 12, n. 9, p. 1, doi. 10.1371/journal.pone.0185066

By:

Wang, Jingying;
Ramette, Alban;
Jurca, Maja;
Goutaki, Myrofora;
Beardsmore, Caroline S.;
Kuehni, Claudia E.

Publication type:

Article

Prevalence of cough throughout childhood: A cohort study.

Published in:

PLoS ONE, 2017, v. 12, n. 5, p. 1, doi. 10.1371/journal.pone.0177485

By:

Jurca, Maja;
Ramette, Alban;
Dogaru, Cristian M.;
Goutaki, Myrofora;
Spycher, Ben D.;
Latzin, Philipp;
Gaillard, Erol A.;
Kuehni, Claudia E.

Publication type:

Article

Response of benthic microbial communities to chitin enrichment: an in situ study in the deep Arctic Ocean.

Published in:

Polar Biology, 2009, v. 32, n. 1, p. 105, doi. 10.1007/s00300-008-0510-4

By:

Kanzog, Corinna;
Ramette, Alban;
Quéric, Nadia V.;
Klages, Michael

Publication type:

Article

Frequency matters: comparison of drug resistance mutation detection by Sanger and next-generation sequencing in HIV-1.

Published in:

Journal of Antimicrobial Chemotherapy (JAC), 2023, v. 78, n. 3, p. 656, doi. 10.1093/jac/dkac430

By:

Balakrishna, Suraj;
Loosli, Tom;
Zaheri, Maryam;
Frischknecht, Paul;
Huber, Michael;
Kusejko, Katharina;
Yerly, Sabine;
Leuzinger, Karoline;
Perreau, Matthieu;
Ramette, Alban;
Wymant, Chris;
Fraser, Christophe;
Kellam, Paul;
Gall, Astrid;
Hirsch, Hans H;
Stoeckle, Marcel;
Rauch, Andri;
Cavassini, Matthias;
Bernasconi, Enos;
Notter, Julia

Publication type:

Article

Methane Seep in Shallow-Water Permeable Sediment Harbors High Diversity of Anaerobic Methanotrophic Communities, Elba, Italy.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00374

By:

Ruff, S. Emil;
Kuhfuss, Hanna;
Wegener, Gunter;
Lott, Christian;
Ramette, Alban;
Wiedling, Johanna;
Knittel, Katrin;
Weber, Miriam

Publication type:

Article

Biogeographic patterns of bacterial microdiversity in Arctic deep-sea sediments (HAUSGARTEN, Fram Strait).

Published in:

Frontiers in Microbiology, 2015, v. 5, p. 1, doi. 10.3389/fmicb.2014.00660

By:

Buttigieg, Pier Luigi;
Ramette, Alban

Publication type:

Article

The R package otu2ot for implementing the entropy decomposition of nucleotide variation in sequence data.

Published in:

Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00601

By:

Ramette, Alban;
Buttigieg, Pier Luigi

Publication type:

Article

Spatial patterns and links between microbial community composition and function in cyanobacterial mats.

Published in:

Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00406

By:

Al-Najjar, Mohammad A. A.;
Ramette, Alban;
Kühl, Michael;
Hamza, Waleed;
Klatt, Judith M.;
Polerecky, Lubos

Publication type:

Article

Microbial colonisation of artificial and deep-sea sediments in the Arctic Ocean.

Published in:

Marine Ecology, 2009, v. 30, n. 4, p. 391, doi. 10.1111/j.1439-0485.2009.00290.x

By:

Kanzog, Corinna;
Ramette, Alban

Publication type:

Article

Epidemiology of Human Adenoviruses: A 20-Year Retrospective Observational Study in Hospitalized Patients in Bern, Switzerland.

Published in:

Clinical Epidemiology, 2020, v. 12, p. 353, doi. 10.2147/CLEP.S246352

By:

Akello, Joyce Odeke;
Kamgang, Richard;
Barbani, Maria Teresa;
Suter-Riniker, Franziska;
Leib, Stephen L;
Ramette, Alban

Publication type:

Article

Bacterial diversity and biogeography in deep-sea surface sediments of the South Atlantic Ocean.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 2, p. 159, doi. 10.1038/ismej.2009.106

By:

Schauer, Regina;
Bienhold, Christina;
Ramette, Alban;
Harder, Jens

Publication type:

Article

Time- and sediment depth-related variations in bacterial diversity and community structure in subtidal sands.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2009, v. 3, n. 7, p. 780, doi. 10.1038/ismej.2009.29

By:

Böer, Simone I.;
Hedtkamp, Stefanie I. C.;
Van Beusekom, Justus E. E.;
Fuhrman, Jed A.;
Boetius, Antje;
Ramette, Alban

Publication type:

Article

Inter- and intra-habitat bacterial diversity associated with cold-water corals.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2009, v. 3, n. 6, p. 756, doi. 10.1038/ismej.2009.15

By:

Schöttner, Sandra;
Hoffmann, Friederike;
Wild, Christian;
Rapp, Hans Tore;
Boetius, Antje;
Ramette, Alban

Publication type:

Article

NASCarD (Nanopore Adaptive Sampling with Carrier DNA): A Rapid, PCR-Free Method for SARS-CoV-2 Whole-Genome Sequencing in Clinical Samples.

Published in:

Pathogens, 2024, v. 13, n. 1, p. 61, doi. 10.3390/pathogens13010061

By:

Terrazos Miani, Miguel A.;
Borcard, Loïc;
Gempeler, Sonja;
Baumann, Christian;
Bittel, Pascal;
Leib, Stephen L.;
Neuenschwander, Stefan;
Ramette, Alban

Publication type:

Article