Works matching IS 13674803 AND DT 2020 AND VI 36 AND IP 3
Results: 61
Accurate and efficient cell lineage tree inference from noisy single cell data: the maximum likelihood perfect phylogeny approach.
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- Bioinformatics, 2020, v. 36, n. 3, p. 742, doi. 10.1093/bioinformatics/btz676
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Semi-blind sparse affine spectral unmixing of autofluorescence-contaminated micrographs.
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- Bioinformatics, 2020, v. 36, n. 3, p. 910, doi. 10.1093/bioinformatics/btz674
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DDAP: docking domain affinity and biosynthetic pathway prediction tool for type I polyketide synthases.
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- Bioinformatics, 2020, v. 36, n. 3, p. 942, doi. 10.1093/bioinformatics/btz677
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Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API.
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- Bioinformatics, 2020, v. 36, n. 3, p. 698, doi. 10.1093/bioinformatics/btz675
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A Gaussian process-based definition reveals new and bona fide genetic interactions compared to a multiplicative model in the Gram-negative Escherichia coli.
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- Bioinformatics, 2020, v. 36, n. 3, p. 880, doi. 10.1093/bioinformatics/btz673
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Tissue-specific deconvolution of immune cell composition by integrating bulk and single-cell transcriptomes.
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- Bioinformatics, 2020, v. 36, n. 3, p. 819, doi. 10.1093/bioinformatics/btz672
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Automatic local resolution-based sharpening of cryo-EM maps.
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- Bioinformatics, 2020, v. 36, n. 3, p. 765, doi. 10.1093/bioinformatics/btz671
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ChaperISM: improved chaperone binding prediction using position-independent scoring matrices.
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- Bioinformatics, 2020, v. 36, n. 3, p. 735, doi. 10.1093/bioinformatics/btz670
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Regulatory annotation of genomic intervals based on tissue-specific expression QTLs.
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- Bioinformatics, 2020, v. 36, n. 3, p. 690, doi. 10.1093/bioinformatics/btz669
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Fast and accurate correction of optical mapping data via spaced seeds.
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- Bioinformatics, 2020, v. 36, n. 3, p. 682, doi. 10.1093/bioinformatics/btz663
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Accurate estimation of microbial sequence diversity with Distanced.
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- Bioinformatics, 2020, v. 36, n. 3, p. 728, doi. 10.1093/bioinformatics/btz668
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Improved representation of sequence bloom trees.
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- Bioinformatics, 2020, v. 36, n. 3, p. 721, doi. 10.1093/bioinformatics/btz662
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A latent unknown clustering integrating multi-omics data (LUCID) with phenotypic traits.
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- Bioinformatics, 2020, v. 36, n. 3, p. 842, doi. 10.1093/bioinformatics/btz667
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miComplete: weighted quality evaluation of assembled microbial genomes.
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- Bioinformatics, 2020, v. 36, n. 3, p. 936, doi. 10.1093/bioinformatics/btz664
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CROSSalive: a web server for predicting the in vivo structure of RNA molecules.
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- Bioinformatics, 2020, v. 36, n. 3, p. 940, doi. 10.1093/bioinformatics/btz666
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Learning from the ligand: using ligand-based features to improve binding affinity prediction.
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- Bioinformatics, 2020, v. 36, n. 3, p. 758, doi. 10.1093/bioinformatics/btz665
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Partition: a surjective mapping approach for dimensionality reduction.
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- Bioinformatics, 2020, v. 36, n. 3, p. 676, doi. 10.1093/bioinformatics/btz661
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A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data.
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- Bioinformatics, 2020, v. 36, n. 3, p. 828, doi. 10.1093/bioinformatics/btz660
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COMBAT-TB-NeoDB: fostering tuberculosis research through integrative analysis using graph database technologies.
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- Bioinformatics, 2020, v. 36, n. 3, p. 982, doi. 10.1093/bioinformatics/btz658
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EasyModel: user-friendly tool for building and analysis of simple mathematical models in systems biology.
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- Bioinformatics, 2020, v. 36, n. 3, p. 976, doi. 10.1093/bioinformatics/btz659
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pCRM1exportome: database of predicted CRM1-dependent Nuclear Export Signal (NES) motifs in cancer-related genes.
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- Bioinformatics, 2020, v. 36, n. 3, p. 961, doi. 10.1093/bioinformatics/btz657
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CRDS: Consensus Reverse Docking System for target fishing.
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- Bioinformatics, 2020, v. 36, n. 3, p. 959, doi. 10.1093/bioinformatics/btz656
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MEXCOwalk: mutual exclusion and coverage based random walk to identify cancer modules.
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- Bioinformatics, 2020, v. 36, n. 3, p. 872, doi. 10.1093/bioinformatics/btz655
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HiLight-PTM: an online application to aid matching peptide pairs with isotopically labelled PTMs.
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- Bioinformatics, 2020, v. 36, n. 3, p. 938, doi. 10.1093/bioinformatics/btz654
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neoepiscope improves neoepitope prediction with multivariant phasing.
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- Bioinformatics, 2020, v. 36, n. 3, p. 713, doi. 10.1093/bioinformatics/btz653
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Gene relevance based on multiple evidences in complex networks.
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- Bioinformatics, 2020, v. 36, n. 3, p. 865, doi. 10.1093/bioinformatics/btz652
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Accurate loop calling for 3D genomic data with cLoops.
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- Bioinformatics, 2020, v. 36, n. 3, p. 666, doi. 10.1093/bioinformatics/btz651
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MEPSAnd: minimum energy path surface analysis over n-dimensional surfaces.
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- Bioinformatics, 2020, v. 36, n. 3, p. 956, doi. 10.1093/bioinformatics/btz649
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MeLAD: an integrated resource for metalloenzyme-ligand associations.
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- Bioinformatics, 2020, v. 36, n. 3, p. 904, doi. 10.1093/bioinformatics/btz648
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NACHO: an R package for quality control of NanoString nCounter data.
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- Bioinformatics, 2020, v. 36, n. 3, p. 970, doi. 10.1093/bioinformatics/btz647
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StrainHub: a phylogenetic tool to construct pathogen transmission networks.
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- Bioinformatics, 2020, v. 36, n. 3, p. 945, doi. 10.1093/bioinformatics/btz646
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Knot_pull—python package for biopolymer smoothing and knot detection.
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- Bioinformatics, 2020, v. 36, n. 3, p. 953, doi. 10.1093/bioinformatics/btz644
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DeepCOP: deep learning-based approach to predict gene regulating effects of small molecules.
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- Bioinformatics, 2020, v. 36, n. 3, p. 813, doi. 10.1093/bioinformatics/btz645
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U-PASS: unified power analysis and forensics for qualitative traits in genetic association studies.
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- Bioinformatics, 2020, v. 36, n. 3, p. 974, doi. 10.1093/bioinformatics/btz637
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NExUS: Bayesian simultaneous network estimation across unequal sample sizes.
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- Bioinformatics, 2020, v. 36, n. 3, p. 798, doi. 10.1093/bioinformatics/btz636
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pWGBSSimla: a profile-based whole-genome bisulfite sequencing data simulator incorporating methylation QTLs, allele-specific methylations and differentially methylated regions.
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- Bioinformatics, 2020, v. 36, n. 3, p. 660, doi. 10.1093/bioinformatics/btz635
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Tersect: a set theoretical utility for exploring sequence variant data.
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- Bioinformatics, 2020, v. 36, n. 3, p. 934, doi. 10.1093/bioinformatics/btz634
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RICOPILI: Rapid Imputation for COnsortias PIpeLIne.
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- Bioinformatics, 2020, v. 36, n. 3, p. 930, doi. 10.1093/bioinformatics/btz633
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baerhunter: an R package for the discovery and analysis of expressed non-coding regions in bacterial RNA-seq data.
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- Bioinformatics, 2020, v. 36, n. 3, p. 966, doi. 10.1093/bioinformatics/btz643
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LightDock goes information-driven.
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- Bioinformatics, 2020, v. 36, n. 3, p. 950, doi. 10.1093/bioinformatics/btz642
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Alternating EM algorithm for a bilinear model in isoform quantification from RNA-seq data.
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- Bioinformatics, 2020, v. 36, n. 3, p. 805, doi. 10.1093/bioinformatics/btz640
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Machine learning empowers phosphoproteome prediction in cancers.
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- Bioinformatics, 2020, v. 36, n. 3, p. 859, doi. 10.1093/bioinformatics/btz639
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AntiHIV-Pred: web-resource for in silico prediction of anti-HIV/AIDS activity.
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- Bioinformatics, 2020, v. 36, n. 3, p. 978, doi. 10.1093/bioinformatics/btz638
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CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes.
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- Bioinformatics, 2020, v. 36, n. 3, p. 972, doi. 10.1093/bioinformatics/btz632
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G3viz: an R package to interactively visualize genetic mutation data using a lollipop-diagram.
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- Bioinformatics, 2020, v. 36, n. 3, p. 928, doi. 10.1093/bioinformatics/btz631
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A powerful and flexible weighted distance-based method incorporating interactions between DNA methylation and environmental factors on health outcomes.
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- Bioinformatics, 2020, v. 36, n. 3, p. 653, doi. 10.1093/bioinformatics/btz630
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PeNGaRoo, a combined gradient boosting and ensemble learning framework for predicting non-classical secreted proteins.
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- Bioinformatics, 2020, v. 36, n. 3, p. 704, doi. 10.1093/bioinformatics/btz629
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Protein Homeostasis Database: protein quality control in E.coli.
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- Bioinformatics, 2020, v. 36, n. 3, p. 948, doi. 10.1093/bioinformatics/btz628
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scHinter: imputing dropout events for single-cell RNA-seq data with limited sample size.
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- Bioinformatics, 2020, v. 36, n. 3, p. 789, doi. 10.1093/bioinformatics/btz627
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CROSSMAPPER: estimating cross-mapping rates and optimizing experimental design in multi-species sequencing studies.
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- Bioinformatics, 2020, v. 36, n. 3, p. 925, doi. 10.1093/bioinformatics/btz626
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