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Class-paired Fuzzy SubNETs: A paired variant of the rank-based network analysis family for feature selection based on protein complexes.
- Published in:
- Proteomics, 2017, v. 17, n. 10, p. n/a, doi. 10.1002/pmic.201700093
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- Publication type:
- Article
Comparative Transcriptomics Unravel Biochemical Specialization of Leaf Tissues of Stevia for Diterpenoid Production.
- Published in:
- Plant Physiology, 2015, v. 169, n. 4, p. 2462, doi. 10.1104/pp.15.01353
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- Publication type:
- Article
A Database of Annotated Promoters of Genes Associated with Common Respiratory and Related Diseases.
- Published in:
- American Journal of Respiratory Cell & Molecular Biology, 2012, v. 47, n. 1, p. 112, doi. 10.1165/rcmb.2011-0419OC
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- Publication type:
- Article
GWAMAR: Genome-wide assessment of mutations associated with drug resistance in bacteria.
- Published in:
- BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S10-S10
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- Publication type:
- Article
Rule discovery and distance separation to detect reliable miRNA biomarkers for the diagnosis of lung squamous cell carcinoma.
- Published in:
- BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S9-S16
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- Publication type:
- Article
Enhancing the utility of Proteomics Signature Profiling (PSP) with Pathway Derived Subnets (PDSs), performance analysis and specialised ontologies.
- Published in:
- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-35
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- Publication type:
- Article
An approach to identifying drug resistance associated mutations in bacterial strains.
- Published in:
- BMC Genomics, 2012, v. 13, n. Suppl 7, p. 1, doi. 10.1186/1471-2164-13-S7-S23
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- Publication type:
- Article
Comparative analysis and assessment of M. tuberculosis H37Rv protein-protein interaction datasets.
- Published in:
- BMC Genomics, 2011, v. 12, n. Suppl 3, p. 1, doi. 10.1186/1471-2164-12-S3-S20
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- Publication type:
- Article
CAMBer: an approach to support comparative analysis of multiple bacterial strains.
- Published in:
- BMC Genomics, 2011, v. 12, n. Suppl 2, p. 1, doi. 10.1186/1471-2164-12-S2-S6
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- Publication type:
- Article
Identifying collateral and synthetic lethal vulnerabilities within the DNA-damage response.
- Published in:
- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04168-7
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- Publication type:
- Article
ProInfer: An interpretable protein inference tool leveraging on biological networks.
- Published in:
- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010961
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- Publication type:
- Article
How advancement in biological network analysis methods empowers proteomics.
- Published in:
- Proteomics, 2012, v. 12, n. 4/5, p. 550, doi. 10.1002/pmic.201100321
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- Publication type:
- Article
Contemporary Network Proteomics and Its Requirements.
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- Biology (2079-7737), 2014, v. 3, n. 1, p. 22, doi. 10.3390/biology3010022
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- Publication type:
- Article
Density-based detection of cell transition states to construct disparate and bifurcating trajectories.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. 21, p. e122, doi. 10.1093/nar/gkac785
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- Publication type:
- Article
SPSNet: subpopulation-sensitive network-based analysis of heterogeneous gene expression data.
- Published in:
- BMC Systems Biology, 2018, v. 12, n. Suppl 2, p. 1, doi. 10.1186/s12918-018-0538-1
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- Publication type:
- Article
International Conference on Genome Informatics (GIW 2013) in Singapore: introduction to the systems biology contributions.
- Published in:
- BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-I1
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- Publication type:
- Article
International Conference on Genome Informatics (GIW 2013) in Singapore: introduction to the systems biology contributions.
- Published in:
- 2013
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- Publication type:
- Proceeding
Stringent DDI-based Prediction of H. sapiens-M. tuberculosis H37Rv Protein-Protein Interactions.
- Published in:
- BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S6
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- Publication type:
- Article
Driving Neurogenesis in Neural Stem Cells with High Sensitivity Optogenetics.
- Published in:
- NeuroMolecular Medicine, 2020, v. 22, n. 1, p. 139, doi. 10.1007/s12017-019-08573-3
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- Publication type:
- Article
Brief Overview of Bioinformatics Activities in Singapore.
- Published in:
- PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000508
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- Publication type:
- Article
A new concise representation of frequent itemsets using generators and a positive border.
- Published in:
- Knowledge & Information Systems, 2008, v. 17, n. 1, p. 35, doi. 10.1007/s10115-007-0111-5
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- Publication type:
- Article
Genetic source completeness of HIV-1 circulating recombinant forms (CRFs) predicted by multi-label learning.
- Published in:
- Bioinformatics, 2021, v. 37, n. 6, p. 750, doi. 10.1093/bioinformatics/btaa887
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- Publication type:
- Article
PDR: a new genome assembly evaluation metric based on genetics concerns.
- Published in:
- Bioinformatics, 2021, v. 37, n. 3, p. 289, doi. 10.1093/bioinformatics/btaa704
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- Publication type:
- Article
Allowing mutations in maximal matches boosts genome compression performance.
- Published in:
- Bioinformatics, 2020, v. 36, n. 18, p. 4675, doi. 10.1093/bioinformatics/btaa572
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- Publication type:
- Article
kmcEx: memory-frugal and retrieval-efficient encoding of counted k-mers.
- Published in:
- Bioinformatics, 2019, v. 35, n. 23, p. 4871, doi. 10.1093/bioinformatics/btz299
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- Publication type:
- Article
MapReduce for accurate error correction of next-generation sequencing data.
- Published in:
- Bioinformatics, 2017, v. 33, n. 23, p. 3844, doi. 10.1093/bioinformatics/btx089
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- Publication type:
- Article
High-speed and high-ratio referential genome compression.
- Published in:
- Bioinformatics, 2017, v. 33, n. 21, p. 3364, doi. 10.1093/bioinformatics/btx412
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- Publication type:
- Article
Hi-Jack: a novel computational framework for pathway-based inference of host-pathogen interactions.
- Published in:
- 2015
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- Publication type:
- Product Review
Discovering pan-correlation patterns from time course data sets by efficient mining algorithms.
- Published in:
- Computing, 2018, v. 100, n. 4, p. 421, doi. 10.1007/s00607-018-0606-9
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- Publication type:
- Article
PATTERN SPACE MAINTENANCE FOR DATA UPDATES AND INTERACTIVE MINING.
- Published in:
- Computational Intelligence, 2010, v. 26, n. 3, p. 282, doi. 10.1111/j.1467-8640.2010.00360.x
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- Publication type:
- Article
A semi-automated methodology for finding lipid-related GO terms.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/bau089
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- Publication type:
- Article
EnsembleFam: towards more accurate protein family prediction in the twilight zone.
- Published in:
- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04626-w
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- Publication type:
- Article
A Probabilistic Graph-Theoretic Approach to Integrate Multiple Predictions for the Protein–Protein Subnetwork Prediction Challenge.
- Published in:
- Annals of the New York Academy of Sciences, 2009, v. 1158, p. 224, doi. 10.1111/j.1749-6632.2008.03760.x
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- Publication type:
- Article
LipidGO: database for lipid-related GO terms and applications.
- Published in:
- Bioinformatics, 2014, v. 30, n. 7, p. 1043, doi. 10.1093/bioinformatics/btt689
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- Publication type:
- Article
Finding consistent disease subnetworks using PFSNet.
- Published in:
- Bioinformatics, 2014, v. 30, n. 2, p. 189, doi. 10.1093/bioinformatics/btt625
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- Publication type:
- Article
PLncDB: plant long non-coding RNA database.
- Published in:
- Bioinformatics, 2013, v. 29, n. 8, p. 1068, doi. 10.1093/bioinformatics/btt107
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- Publication type:
- Article
The role of miRNAs in complex formation and control.
- Published in:
- Bioinformatics, 2012, v. 28, n. 4, p. 453, doi. 10.1093/bioinformatics/btr693
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- Publication type:
- Article
Response: an empirical comparison of several recent epistatic interaction detection methods.
- Published in:
- 2012
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- Publication type:
- Letter
CAMBerVis: visualization software to support comparative analysis of multiple bacterial strains.
- Published in:
- Bioinformatics, 2011, v. 27, n. 23, p. 3313, doi. 10.1093/bioinformatics/btr561
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- Publication type:
- Article
An empirical comparison of several recent epistatic interaction detection methods.
- Published in:
- Bioinformatics, 2011, v. 27, n. 21, p. 2936, doi. 10.1093/bioinformatics/btr512
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- Publication type:
- Article
Structural analysis of the hot spots in the binding between H1N1 HA and the 2D1 antibody: do mutations of H1N1 from 1918 to 2009 affect much on this binding?
- Published in:
- Bioinformatics, 2011, v. 27, n. 18, p. 2529, doi. 10.1093/bioinformatics/btr437
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- Publication type:
- Article
eCEO: an efficient Cloud Epistasis cOmputing model in genome-wide association study.
- Published in:
- Bioinformatics, 2011, v. 27, n. 8, p. 1045, doi. 10.1093/bioinformatics/btr091
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- Publication type:
- Article
MIRACH: efficient model checker for quantitative biological pathway models.
- Published in:
- Bioinformatics, 2011, v. 27, n. 5, p. 734, doi. 10.1093/bioinformatics/btq727
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- Publication type:
- Article
DA 1.0: parameter estimation of biological pathways using data assimilation approach.
- Published in:
- Bioinformatics, 2010, v. 26, n. 14, p. 1794, doi. 10.1093/bioinformatics/btq276
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- Publication type:
- Article
Complex discovery from weighted PPI networks.
- Published in:
- Bioinformatics, 2009, v. 25, n. 15, p. 1891, doi. 10.1093/bioinformatics/btp311
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- Publication type:
- Article
An efficient strategy for extensive integration of diverse biological data for protein function prediction.
- Published in:
- Bioinformatics, 2007, v. 23, n. 24, p. 3364, doi. 10.1093/bioinformatics/btm520
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- Publication type:
- Article
Dragon Promoter Mapper (DPM): a Bayesian framework for modelling promoter structures.
- Published in:
- Bioinformatics, 2006, v. 22, n. 18, p. 2310, doi. 10.1093/bioinformatics/btl125
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- Publication type:
- Article
Exploiting indirect neighbours and topological weight to predict protein function from protein–protein interactions.
- Published in:
- Bioinformatics, 2006, v. 22, n. 13, p. 1623, doi. 10.1093/bioinformatics/btl145
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- Publication type:
- Article
Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale.
- Published in:
- Bioinformatics, 2006, v. 22, n. 8, p. 989
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- Publication type:
- Article
DNAFSMiner: a web-based software toolbox to recognize two types of functional sites in DNA sequences.
- Published in:
- Bioinformatics, 2005, v. 21, n. 5, p. 671, doi. 10.1093/bioinformatics/bth437
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- Publication type:
- Article