Works matching IS 13674803 AND DT 2019 AND VI 35 AND IP 20
Results: 52
EPIP: a novel approach for condition-specific enhancer–promoter interaction prediction.
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- Bioinformatics, 2019, v. 35, n. 20, p. 3877, doi. 10.1093/bioinformatics/btz641
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- Article
Sub-dominant principal components inform new vaccine targets for HIV Gag.
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- Bioinformatics, 2019, v. 35, n. 20, p. 3884, doi. 10.1093/bioinformatics/btz524
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Corrigendum to: A new cis-acting regulatory element driving gene expression in the zebrafish pineal gland.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4206, doi. 10.1093/bioinformatics/btz410
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relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4205, doi. 10.1093/bioinformatics/btz397
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Developing structural profile matrices for protein secondary structure and solvent accessibility prediction.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4004, doi. 10.1093/bioinformatics/btz238
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- Article
FLAS: fast and high-throughput algorithm for PacBio long-read self-correction.
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- Bioinformatics, 2019, v. 35, n. 20, p. 3953, doi. 10.1093/bioinformatics/btz206
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ERVcaller: identifying polymorphic endogenous retrovirus and other transposable element insertions using whole-genome sequencing data.
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- Bioinformatics, 2019, v. 35, n. 20, p. 3913, doi. 10.1093/bioinformatics/btz205
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Protein multiple alignments: sequence-based versus structure-based programs.
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- Bioinformatics, 2019, v. 35, n. 20, p. 3970, doi. 10.1093/bioinformatics/btz236
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SPRINT-Gly: predicting N- and O-linked glycosylation sites of human and mouse proteins by using sequence and predicted structural properties.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4140, doi. 10.1093/bioinformatics/btz215
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CliqueMS: a computational tool for annotating in-source metabolite ions from LC-MS untargeted metabolomics data based on a coelution similarity network.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4089, doi. 10.1093/bioinformatics/btz207
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Discovery of tandem and interspersed segmental duplications using high-throughput sequencing.
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- Bioinformatics, 2019, v. 35, n. 20, p. 3923, doi. 10.1093/bioinformatics/btz237
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- Article
Simultaneous clustering of multiview biomedical data using manifold optimization.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4029, doi. 10.1093/bioinformatics/btz217
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- Article
Differential proteostatic regulation of insoluble and abundant proteins.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4098, doi. 10.1093/bioinformatics/btz214
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- Article
PgpRules: a decision tree based prediction server for P-glycoprotein substrates and inhibitors.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4193, doi. 10.1093/bioinformatics/btz213
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- Article
CytoBackBone: an algorithm for merging of phenotypic information from different cytometric profiles.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4187, doi. 10.1093/bioinformatics/btz212
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TISIDB: an integrated repository portal for tumor–immune system interactions.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4200, doi. 10.1093/bioinformatics/btz210
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ASTRAL-MP: scaling ASTRAL to very large datasets using randomization and parallelization.
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- Bioinformatics, 2019, v. 35, n. 20, p. 3961, doi. 10.1093/bioinformatics/btz211
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- Article
PedigreeNet: a web-based pedigree viewer for biological databases.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4184, doi. 10.1093/bioinformatics/btz208
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- Article
maTE: discovering expressed interactions between microRNAs and their targets.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4020, doi. 10.1093/bioinformatics/btz204
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- Article
Pinetree: a step-wise gene expression simulator with codon-specific translation rates.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4176, doi. 10.1093/bioinformatics/btz203
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ORE identifies extreme expression effects enriched for rare variants.
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- Bioinformatics, 2019, v. 35, n. 20, p. 3906, doi. 10.1093/bioinformatics/btz202
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Enhanced Waddington landscape model with cell–cell communication can explain molecular mechanisms of self-organization.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4081, doi. 10.1093/bioinformatics/btz201
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Simulation-assisted machine learning.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4072, doi. 10.1093/bioinformatics/btz199
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SArKS: de novo discovery of gene expression regulatory motif sites and domains by suffix array kernel smoothing.
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- Bioinformatics, 2019, v. 35, n. 20, p. 3944, doi. 10.1093/bioinformatics/btz198
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Modelling G × E with historical weather information improves genomic prediction in new environments.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4045, doi. 10.1093/bioinformatics/btz197
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- Article
Dissecting differential signals in high-throughput data from complex tissues.
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- Bioinformatics, 2019, v. 35, n. 20, p. 3898, doi. 10.1093/bioinformatics/btz196
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Health assistant: answering your questions anytime from biomedical literature.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4129, doi. 10.1093/bioinformatics/btz195
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Neural networks with circular filters enable data efficient inference of sequence motifs.
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- Bioinformatics, 2019, v. 35, n. 20, p. 3937, doi. 10.1093/bioinformatics/btz194
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- Article
ScanNeo: identifying indel-derived neoantigens using RNA-Seq data.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4159, doi. 10.1093/bioinformatics/btz193
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Compressed filesystem for managing large genome collections.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4120, doi. 10.1093/bioinformatics/btz192
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onlineFDR: an R package to control the false discovery rate for growing data repositories.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4196, doi. 10.1093/bioinformatics/btz191
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BrAPI—an application programming interface for plant breeding applications.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4147, doi. 10.1093/bioinformatics/btz190
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Significance tests for analyzing gene expression data with small sample sizes.
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- Bioinformatics, 2019, v. 35, n. 20, p. 3996, doi. 10.1093/bioinformatics/btz189
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GToTree: a user-friendly workflow for phylogenomics.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4162, doi. 10.1093/bioinformatics/btz188
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GladiaTOX: GLobal Assessment of Dose-IndicAtor in TOXicology.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4190, doi. 10.1093/bioinformatics/btz187
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ECOGEMS: efficient compression and retrieve of SNP data of 2058 rice accessions with integer sparse matrices.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4181, doi. 10.1093/bioinformatics/btz186
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- Article
CABS-dock standalone: a toolbox for flexible protein–peptide docking.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4170, doi. 10.1093/bioinformatics/btz185
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FoldX 5.0: working with RNA, small molecules and a new graphical interface.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4168, doi. 10.1093/bioinformatics/btz184
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Classical scoring functions for docking are unable to exploit large volumes of structural and interaction data.
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- Bioinformatics, 2019, v. 35, n. 20, p. 3989, doi. 10.1093/bioinformatics/btz183
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Probabilistic count matrix factorization for single cell expression data analysis.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4011, doi. 10.1093/bioinformatics/btz177
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Drug repositioning through integration of prior knowledge and projections of drugs and diseases.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4108, doi. 10.1093/bioinformatics/btz182
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CyTOFmerge: integrating mass cytometry data across multiple panels.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4063, doi. 10.1093/bioinformatics/btz180
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PleioNet: a web-based visualization tool for exploring pleiotropy across complex traits.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4179, doi. 10.1093/bioinformatics/btz179
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- Publication type:
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Lemon: a framework for rapidly mining structural information from the Protein Data Bank.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4165, doi. 10.1093/bioinformatics/btz178
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SCL: a lattice-based approach to infer 3D chromosome structures from single-cell Hi-C data.
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- Bioinformatics, 2019, v. 35, n. 20, p. 3981, doi. 10.1093/bioinformatics/btz181
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SummaryAUC: a tool for evaluating the performance of polygenic risk prediction models in validation datasets with only summary level statistics.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4038, doi. 10.1093/bioinformatics/btz176
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SodaPop: a forward simulation suite for the evolutionary dynamics of asexual populations on protein fitness landscapes.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4053, doi. 10.1093/bioinformatics/btz175
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Multiresolution correction of GC bias and application to identification of copy number alterations.
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- Bioinformatics, 2019, v. 35, n. 20, p. 3890, doi. 10.1093/bioinformatics/btz174
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Stable H3K4me3 is associated with transcription initiation during early embryo development.
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- Bioinformatics, 2019, v. 35, n. 20, p. 3931, doi. 10.1093/bioinformatics/btz173
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- Publication type:
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Holistic optimization of an RNA-seq workflow for multi-threaded environments.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4173, doi. 10.1093/bioinformatics/btz169
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