Results: 59
Inferring clonal heterogeneity in cancer using SNP arrays and whole genome sequencing.
- Published in:
- Bioinformatics, 2019, v. 35, n. 17, p. 3216, doi. 10.1093/bioinformatics/btz243
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- Article
GlycanAnalyzer: software for automated interpretation of N-glycan profiles after exoglycosidase digestions.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3214, doi. 10.1093/bioinformatics/btz077
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- Article
Inferring clonal heterogeneity in cancer using SNP arrays and whole genome sequencing.
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- Bioinformatics, 2019, v. 35, n. 17, p. 2924, doi. 10.1093/bioinformatics/btz057
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- Article
Best-first search guided multistage mass spectrometry-based glycan identification.
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- Bioinformatics, 2019, v. 35, n. 17, p. 2991, doi. 10.1093/bioinformatics/btz056
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- Article
Efficient implementation of convolutional neural networks in the data processing of two-photon in vivo imaging.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3208, doi. 10.1093/bioinformatics/btz055
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- Article
Tracing the ancestry of operons in bacteria.
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- Bioinformatics, 2019, v. 35, n. 17, p. 2998, doi. 10.1093/bioinformatics/btz053
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- Article
DiffNetFDR: differential network analysis with false discovery rate control.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3184, doi. 10.1093/bioinformatics/btz051
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- Article
multiHiCcompare: joint normalization and comparative analysis of complex Hi-C experiments.
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- Bioinformatics, 2019, v. 35, n. 17, p. 2916, doi. 10.1093/bioinformatics/btz048
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- Article
The ReproGenomics Viewer: a multi-omics and cross-species resource compatible with single-cell studies for the reproductive science community.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3133, doi. 10.1093/bioinformatics/btz047
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- Article
Varanto: variant enrichment analysis and annotation.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3154, doi. 10.1093/bioinformatics/btz046
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- Article
Functional data analysis for computational biology.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3211, doi. 10.1093/bioinformatics/btz045
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- Article
RIscoper: a tool for RNA–RNA interaction extraction from the literature.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3199, doi. 10.1093/bioinformatics/btz044
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- Article
SRG extractor: a skinny reference genome approach for reduced-representation sequencing.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3160, doi. 10.1093/bioinformatics/btz043
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- Article
CMEP: a database for circulating microRNA expression profiling.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3127, doi. 10.1093/bioinformatics/btz042
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- Article
SVIM: structural variant identification using mapped long reads.
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- Bioinformatics, 2019, v. 35, n. 17, p. 2907, doi. 10.1093/bioinformatics/btz041
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- Article
Protein fold recognition based on multi-view modeling.
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- Bioinformatics, 2019, v. 35, n. 17, p. 2982, doi. 10.1093/bioinformatics/btz040
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- Article
InterMineR: an R package for InterMine databases.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3206, doi. 10.1093/bioinformatics/btz039
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- Article
The interplay between microRNA and alternative splicing of linear and circular RNAs in eleven plant species.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3119, doi. 10.1093/bioinformatics/btz038
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- Article
SMARTCyp 3.0: enhanced cytochrome P450 site-of-metabolism prediction server.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3174, doi. 10.1093/bioinformatics/btz037
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- Article
OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs.
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- Bioinformatics, 2019, v. 35, n. 17, p. 2974, doi. 10.1093/bioinformatics/btz035
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- Article
queryMed: Semantic Web functions for linking pharmacological and medical knowledge to data.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3203, doi. 10.1093/bioinformatics/btz034
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- Article
Improved indel detection in DNA and RNA via realignment with ABRA2.
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- Bioinformatics, 2019, v. 35, n. 17, p. 2966, doi. 10.1093/bioinformatics/btz033
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- Article
A network of networks approach for modeling interconnected brain tissue-specific networks.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3092, doi. 10.1093/bioinformatics/btz032
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- Article
ensembldb: an R package to create and use Ensembl-based annotation resources.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3151, doi. 10.1093/bioinformatics/btz031
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- Article
admixr—R package for reproducible analyses using ADMIXTOOLS.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3194, doi. 10.1093/bioinformatics/btz030
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- Article
AllerCatPro—prediction of protein allergenicity potential from the protein sequence.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3020, doi. 10.1093/bioinformatics/btz029
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- Article
PSiTE: a Phylogeny guided Simulator for Tumor Evolution.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3148, doi. 10.1093/bioinformatics/btz028
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- Article
EBIC: an open source software for high-dimensional and big data analyses.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3181, doi. 10.1093/bioinformatics/btz027
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- Article
KORP: knowledge-based 6D potential for fast protein and loop modeling.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3013, doi. 10.1093/bioinformatics/btz026
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- Article
COmplexome Profiling ALignment (COPAL) reveals remodeling of mitochondrial protein complexes in Barth syndrome.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3083, doi. 10.1093/bioinformatics/btz025
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- Article
ClusterMap: compare multiple single cell RNA-Seq datasets across different experimental conditions.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3038, doi. 10.1093/bioinformatics/btz024
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- Article
Large-scale analysis of human gene expression variability associates highly variable drug targets with lower drug effectiveness and safety.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3028, doi. 10.1093/bioinformatics/btz023
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- Article
Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3171, doi. 10.1093/bioinformatics/btz022
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- Article
TopoLink: evaluation of structural models using chemical crosslinking distance constraints.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3169, doi. 10.1093/bioinformatics/btz014
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- Article
METACLUSTER—an R package for context-specific expression analysis of metabolic gene clusters.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3178, doi. 10.1093/bioinformatics/btz021
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- Publication type:
- Article
Crisflash: open-source software to generate CRISPR guide RNAs against genomes annotated with individual variation.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3146, doi. 10.1093/bioinformatics/btz019
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- Article
SMuRF: portable and accurate ensemble prediction of somatic mutations.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3157, doi. 10.1093/bioinformatics/btz018
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- Article
PopCluster: an algorithm to identify genetic variants with ethnicity-dependent effects.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3046, doi. 10.1093/bioinformatics/btz017
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- Publication type:
- Article
MULTiPly: a novel multi-layer predictor for discovering general and specific types of promoters.
- Published in:
- Bioinformatics, 2019, v. 35, n. 17, p. 2957, doi. 10.1093/bioinformatics/btz016
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- Article
Benchmark problems for dynamic modeling of intracellular processes.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3073, doi. 10.1093/bioinformatics/btz020
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- Article
Statistical force-field for structural modeling using chemical cross-linking/mass spectrometry distance constraints.
- Published in:
- Bioinformatics, 2019, v. 35, n. 17, p. 3005, doi. 10.1093/bioinformatics/btz013
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- Article
A web application and service for imputing and visualizing missense variant effect maps.
- Published in:
- Bioinformatics, 2019, v. 35, n. 17, p. 3191, doi. 10.1093/bioinformatics/btz012
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- Publication type:
- Article
AQUAPONY: visualization and interpretation of phylogeographic information on phylogenetic trees.
- Published in:
- Bioinformatics, 2019, v. 35, n. 17, p. 3163, doi. 10.1093/bioinformatics/btz011
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- Publication type:
- Article
Sstack: an R package for stacking with applications to scenarios involving sequential addition of samples and features.
- Published in:
- Bioinformatics, 2019, v. 35, n. 17, p. 3143, doi. 10.1093/bioinformatics/btz010
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- Article
Ordino: a visual cancer analysis tool for ranking and exploring genes, cell lines and tissue samples.
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- Bioinformatics, 2019, v. 35, n. 17, p. 3140, doi. 10.1093/bioinformatics/btz009
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- Publication type:
- Article
Characterization and identification of long non-coding RNAs based on feature relationship.
- Published in:
- Bioinformatics, 2019, v. 35, n. 17, p. 2949, doi. 10.1093/bioinformatics/btz008
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- Publication type:
- Article
CluMSID: an R package for similarity-based clustering of tandem mass spectra to aid feature annotation in metabolomics.
- Published in:
- Bioinformatics, 2019, v. 35, n. 17, p. 3196, doi. 10.1093/bioinformatics/btz005
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- Publication type:
- Article
KASPspoon: an in vitro and in silico PCR analysis tool for high-throughput SNP genotyping.
- Published in:
- Bioinformatics, 2019, v. 35, n. 17, p. 3187, doi. 10.1093/bioinformatics/btz004
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- Article
Identifying residues that determine palmitoylation using association rule mining.
- Published in:
- Bioinformatics, 2019, v. 35, n. 17, p. 2887, doi. 10.1093/bioinformatics/btz003
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- Publication type:
- Article
Streamlined analysis of LINCS L1000 data with the slinky package for R.
- Published in:
- Bioinformatics, 2019, v. 35, n. 17, p. 3176, doi. 10.1093/bioinformatics/btz002
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- Publication type:
- Article