Works matching AU Wessels, Lodewyk F


Results: 75
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    Spatial relationships in the urothelial and head and neck tumor microenvironment predict response to combination immune checkpoint inhibitors.

    Published in:
    Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46450-1
    By:
    • Gil-Jimenez, Alberto;
    • van Dijk, Nick;
    • Vos, Joris L.;
    • Lubeck, Yoni;
    • van Montfoort, Maurits L.;
    • Peters, Dennis;
    • Hooijberg, Erik;
    • Broeks, Annegien;
    • Zuur, Charlotte L.;
    • van Rhijn, Bas W. G.;
    • Vis, Daniel J.;
    • van der Heijden, Michiel S.;
    • Wessels, Lodewyk F. A.
    Publication type:
    Article
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    Homologous Recombination Deficiency and Cyclin E1 Amplification Are Correlated with Immune Cell Infiltration and Survival in High-Grade Serous Ovarian Cancer.

    Published in:
    Cancers, 2022, v. 14, n. 23, p. 5965, doi. 10.3390/cancers14235965
    By:
    • van Wagensveld, Lilian;
    • van Baal, Juliette O. A. M.;
    • Timmermans, Maite;
    • Gaillard, Duco;
    • Borghuis, Lauri;
    • Coffelt, Seth B.;
    • Rosenberg, Efraim H.;
    • Lok, Christianne A. R.;
    • Nijman, Hans W.;
    • Kooreman, Loes F. S.;
    • Sanders, Joyce;
    • de Bruijn, Marco;
    • Wessels, Lodewyk F. A.;
    • van der Wiel, Rianne;
    • Rausch, Christian;
    • Broeks, Annegien;
    • Kruitwagen, Roy F. P. M.;
    • van der Aa, Maaike A.;
    • Sonke, Gabe S.;
    • Schouten, Philip C.
    Publication type:
    Article
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    CopywriteR: DNA copy number detection from off-target sequence data.

    Published in:
    Genome Biology, 2015, v. 16, n. 1, p. 49, doi. 10.1186/s13059-015-0617-1
    By:
    • Kuilman, Thomas;
    • Velds, Arno;
    • Kemper, Kristel;
    • Ranzani, Marco;
    • Bombardelli, Lorenzo;
    • Hoogstraat, Marlous;
    • Nevedomskaya, Ekaterina;
    • Guotai Xu;
    • de Ruiter, Julian;
    • Lolkema, Martijn P;
    • Ylstra, Bauke;
    • Jonkers, Jos;
    • Rottenberg, Sven;
    • Wessels, Lodewyk F;
    • Adams, David J;
    • Peeper, Daniel S;
    • Krijgsman, Oscar
    Publication type:
    Article
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    CopywriteR: DNA copy number detection from off-target sequence data.

    Published in:
    Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0617-1
    By:
    • Kuilman, Thomas;
    • Velds, Arno;
    • Kemper, Kristel;
    • Ranzani, Marco;
    • Bombardelli, Lorenzo;
    • Hoogstraat, Marlous;
    • Nevedomskaya, Ekaterina;
    • Xu, Guotai;
    • de Ruiter, Julian;
    • Lolkema, Martijn P.;
    • Ylstra, Bauke;
    • Jonkers, Jos;
    • Rottenberg, Sven;
    • Wessels, Lodewyk F.;
    • Adams, David J.;
    • Peeper, Daniel S.;
    • Krijgsman, Oscar
    Publication type:
    Article
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    Subunit composition of VRAC channels determines substrate specificity and cellular resistance to Pt-based anti-cancer drugs.

    Published in:
    EMBO Journal, 2015, v. 34, n. 24, p. 2993, doi. 10.15252/embj.201592409
    By:
    • Planells‐Cases, Rosa;
    • Lutter, Darius;
    • Guyader, Charlotte;
    • Gerhards, Nora M;
    • Ullrich, Florian;
    • Elger, Deborah A;
    • Kucukosmanoglu, Asli;
    • Xu, Guotai;
    • Voss, Felizia K;
    • Reincke, S Momsen;
    • Stauber, Tobias;
    • Blomen, Vincent A;
    • Vis, Daniel J;
    • Wessels, Lodewyk F;
    • Brummelkamp, Thijn R;
    • Borst, Piet;
    • Rottenberg, Sven;
    • Jentsch, Thomas J
    Publication type:
    Article
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    Breast adipocyte size associates with ipsilateral invasive breast cancer risk after ductal carcinoma in situ.

    Published in:
    NPJ Breast Cancer, 2021, v. 7, n. 1, p. 1, doi. 10.1038/s41523-021-00232-w
    By:
    • Almekinders, Mathilde M. M.;
    • Schaapveld, Michael;
    • Thijssen, Bram;
    • Visser, Lindy L.;
    • Bismeijer, Tycho;
    • Sanders, Joyce;
    • Isnaldi, Edoardo;
    • Hofland, Ingrid;
    • Mertz, Marjolijn;
    • Wessels, Lodewyk F. A.;
    • Broeks, Annegien;
    • Hooijberg, Erik;
    • Zwart, Wilbert;
    • Lips, Esther H.;
    • Grand Challenge PRECISION Consortium;
    • Desmedt, Christine;
    • Wesseling, Jelle
    Publication type:
    Article
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    Comparative oncogenomics identifies combinations of driver genes and drug targets in BRCA1-mutated breast cancer.

    Published in:
    Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-08301-2
    By:
    • Annunziato, Stefano;
    • de Ruiter, Julian R.;
    • Henneman, Linda;
    • Brambillasca, Chiara S.;
    • Lutz, Catrin;
    • Vaillant, François;
    • Ferrante, Federica;
    • Drenth, Anne Paulien;
    • van der Burg, Eline;
    • Siteur, Bjørn;
    • van Gerwen, Bas;
    • de Bruijn, Roebi;
    • van Miltenburg, Martine H.;
    • Huijbers, Ivo J.;
    • van de Ven, Marieke;
    • Visvader, Jane E.;
    • Lindeman, Geoffrey J.;
    • Wessels, Lodewyk F. A.;
    • Jonkers, Jos
    Publication type:
    Article
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    Reversible and adaptive resistance to BRAF(V600E) inhibition in melanoma.

    Published in:
    Nature, 2014, v. 508, n. 7494, p. 118, doi. 10.1038/nature13121
    By:
    • Sun, Chong;
    • Wang, Liqin;
    • Huang, Sidong;
    • Heynen, Guus J. J. E.;
    • Prahallad, Anirudh;
    • Robert, Caroline;
    • Haanen, John;
    • Blank, Christian;
    • Wesseling, Jelle;
    • Willems, Stefan M.;
    • Zecchin, Davide;
    • Hobor, Sebastijan;
    • Bajpe, Prashanth K.;
    • Lieftink, Cor;
    • Mateus, Christina;
    • Vagner, Stephan;
    • Grernrum, Wipawadee;
    • Hofland, Ingrid;
    • Schlicker, Andreas;
    • Wessels, Lodewyk F. A.
    Publication type:
    Article
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    Multiscale representation of genomic signals.

    Published in:
    Nature Methods, 2014, v. 11, n. 6, p. 689, doi. 10.1038/nmeth.2924
    By:
    • Knijnenburg, Theo A;
    • Ramsey, Stephen A;
    • Berman, Benjamin P;
    • Kennedy, Kathleen A;
    • Smit, Arian F A;
    • Wessels, Lodewyk F A;
    • Laird, Peter W;
    • Aderem, Alan;
    • Shmulevich, Ilya
    Publication type:
    Article
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    Fewer permutations, more accurate P-values.

    Published in:
    Bioinformatics, 2009, v. 25, n. 12, p. i161, doi. 10.1093/bioinformatics/btp211
    By:
    • Theo A. Knijnenburg;
    • Lodewyk F. A. Wessels;
    • Marcel J. T. Reinders;
    • Ilya Shmulevich
    Publication type:
    Article
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    Analysis of mass spectrometry data using sub-spectra.

    Published in:
    BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S1-S51
    By:
    • Meuleman, Wouter;
    • Engwegen, Judith Y. M. N.;
    • Gast, Marie-Christine W.;
    • Wessels, Lodewyk F. A.;
    • Reinders, Marcel J. T.
    Publication type:
    Article
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    Modelling signalling networks from perturbation data.

    Published in:
    Bioinformatics, 2018, v. 34, n. 23, p. 4079, doi. 10.1093/bioinformatics/bty473
    By:
    • Dorel, Mathurin;
    • Klinger, Bertram;
    • Gross, Torsten;
    • Sieber, Anja;
    • Prahallad, Anirudh;
    • Bosdriesz, Evert;
    • Wessels, Lodewyk F A;
    • Blüthgen, Nils
    Publication type:
    Article
    39

    iTOP: inferring the topology of omics data.

    Published in:
    Bioinformatics, 2018, v. 34, n. 17, p. i988, doi. 10.1093/bioinformatics/bty636
    By:
    • Aben, Nanne;
    • Westerhuis, Johan A;
    • Song, Yipeng;
    • Kiers, Henk A L;
    • Michaut, Magali;
    • Smilde, Age K;
    • Wessels, Lodewyk F A
    Publication type:
    Article
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