Works matching AU Chen, Gary K

Results: 29

Iterative hard thresholding for model selection in genome-wide association studies.

Published in:

Genetic Epidemiology, 2017, v. 41, n. 8, p. 756, doi. 10.1002/gepi.22068

By:

Keys, Kevin L.;
Chen, Gary K.;
Lange, Kenneth

Publication type:

Article

Using biological knowledge to discover higher order interactions in genetic association studies.

Published in:

Genetic Epidemiology, 2010, v. 34, n. 8, p. 863, doi. 10.1002/gepi.20542

By:

Chen, Gary K.;
Thomas, Duncan C

Publication type:

Article

Genome-wide association analyses of expression phenotypes.

Published in:

Genetic Epidemiology, 2007, v. 31, n. S1, p. S7, doi. 10.1002/gepi.20275

By:

Chen, Gary K.;
Zheng, Tian;
Witte, John S.;
Goode, Ellen L.

Publication type:

Article

cit: hypothesis testing software for mediation analysis in genomic applications.

Published in:

Bioinformatics, 2016, v. 32, n. 15, p. 2364, doi. 10.1093/bioinformatics/btw135

By:

Millstein, Joshua;
Chen, Gary K.;
Breton, Carrie V.

Publication type:

Article

al3c: high-performance software for parameter inference using Approximate Bayesian Computation.

Published in:

Bioinformatics, 2015, v. 31, n. 21, p. 3549, doi. 10.1093/bioinformatics/btv393

By:

Stram, Alexander H.;
Marjoram, Paul;
Gary K. Chen

Publication type:

Article

Precise inference of copy number alterations in tumor samples from SNP arrays.

Published in:

Bioinformatics, 2013, v. 29, n. 23, p. 2964, doi. 10.1093/bioinformatics/btt521

By:

Chen, Gary K.;
Chang, Xiao;
Curtis, Christina;
Wang, Kai

Publication type:

Article

Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1407, doi. 10.1093/bioinformatics/btt166

By:

Pasaniuc, Bogdan;
Sankararaman, Sriram;
Torgerson, Dara G.;
Gignoux, Christopher;
Zaitlen, Noah;
Eng, Celeste;
Rodriguez-Cintron, William;
Chapela, Rocio;
Ford, Jean G.;
Avila, Pedro C.;
Rodriguez-Santana, Jose;
Chen, Gary K.;
Le Marchand, Loic;
Henderson, Brian;
Reich, David;
Haiman, Christopher A.;
Gonzàlez Burchard, Esteban;
Halperin, Eran

Publication type:

Article

Mendel-GPU: haplotyping and genotype imputation on graphics processing units.

Published in:

Bioinformatics, 2012, v. 28, n. 22, p. 2979, doi. 10.1093/bioinformatics/bts536

By:

Chen, Gary K.;
Wang, Kai;
Stram, Alex H.;
Sobel, Eric M.;
Lange, Kenneth

Publication type:

Article

A scalable and portable framework for massively parallel variable selection in genetic association studies.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 719, doi. 10.1093/bioinformatics/bts015

By:

Chen, Gary K.

Publication type:

Article

A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry.

Published in:

Nature Genetics, 2013, v. 45, n. 6, p. 690, doi. 10.1038/ng.2608

By:

Monda, Keri L;
Chen, Gary K;
Taylor, Kira C;
Palmer, Cameron;
Edwards, Todd L;
Lange, Leslie A;
Ng, Maggie C Y;
Adeyemo, Adebowale A;
Allison, Matthew A;
Bielak, Lawrence F;
Chen, Guanjie;
Graff, Mariaelisa;
Irvin, Marguerite R;
Rhie, Suhn K;
Li, Guo;
Liu, Yongmei;
Liu, Youfang;
Lu, Yingchang;
Nalls, Michael A;
Sun, Yan V

Publication type:

Article

Common variants at 11q12, 10q26 and 3p11.2 are associated with prostate cancer susceptibility in Japanese.

Published in:

Nature Genetics, 2012, v. 44, n. 4, p. 426, doi. 10.1038/ng.1104

By:

Akamatsu, Shusuke;
Takata, Ryo;
Haiman, Christopher A;
Takahashi, Atsushi;
Inoue, Takahiro;
Kubo, Michiaki;
Furihata, Mutsuo;
Kamatani, Naoyuki;
Inazawa, Johji;
Chen, Gary K;
Le Marchand, Loïc;
Kolonel, Laurence N;
Katoh, Takahiko;
Yamano, Yuko;
Yamakado, Minoru;
Takahashi, Hiroyuki;
Yamada, Hiroki;
Egawa, Shin;
Fujioka, Tomoaki;
Henderson, Brian E

Publication type:

Article

A common variant at the TERT-CLPTM1L locus is associated with estrogen receptor-negative breast cancer.

Published in:

Nature Genetics, 2011, v. 43, n. 12, p. 1210, doi. 10.1038/ng.985

By:

Haiman, Christopher A;
Chen, Gary K;
Vachon, Celine M;
Canzian, Federico;
Dunning, Alison;
Millikan, Robert C;
Wang, Xianshu;
Ademuyiwa, Foluso;
Ahmed, Shahana;
Ambrosone, Christine B;
Baglietto, Laura;
Balleine, Rosemary;
Bandera, Elisa V;
Beckmann, Matthias W;
Berg, Christine D;
Bernstein, Leslie;
Blomqvist, Carl;
Blot, William J;
Brauch, Hiltrud;
Buring, Julie E

Publication type:

Article

Genome-wide association study of prostate cancer in men of African ancestry identifies a susceptibility locus at 17q21.

Published in:

Nature Genetics, 2011, v. 43, n. 6, p. 570, doi. 10.1038/ng.839

By:

Haiman, Christopher A.;
Chen, Gary K.;
Blot, William J.;
Strom, Sara S.;
Berndt, Sonja I.;
Kittles, Rick A.;
Rybicki, Benjamin A.;
Isaacs, William B.;
Ingles, Sue A.;
Stanford, Janet L.;
Diver, W. Ryan;
Witte, John S.;
Hsing, Ann W.;
Nemesure, Barbara;
Rebbeck, Timothy R.;
Cooney, Kathleen A.;
Jianfeng Xu;
Kibel, Adam S.;
Hu, Jennifer J.;
John, Esther M.

Publication type:

Article

Methodological Considerations in Estimation of Phenotype Heritability Using Genome-Wide SNP Data, Illustrated by an Analysis of the Heritability of Height in a Large Sample of African Ancestry Adults.

Published in:

PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0131106

By:

Chen, Fang;
He, Jing;
Zhang, Jianqi;
Chen, Gary K.;
Thomas, Venetta;
Ambrosone, Christine B.;
Bandera, Elisa V.;
Berndt, Sonja I.;
Bernstein, Leslie;
Blot, William J.;
Cai, Qiuyin;
Carpten, John;
Casey, Graham;
Chanock, Stephen J.;
Cheng, Iona;
Chu, Lisa;
Deming, Sandra L.;
Driver, W. Ryan;
Goodman, Phyllis;
Hayes, Richard B.

Publication type:

Article

A Genome-Wide Scan for Breast Cancer Risk Haplotypes among African American Women.

Published in:

PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0057298

By:

Song, Chi;
Chen, Gary K.;
Millikan, Robert C.;
Ambrosone, Christine B.;
John, Esther M.;
Bernstein, Leslie;
Zheng, Wei;
Hu, Jennifer J.;
Ziegler, Regina G.;
Nyante, Sarah;
Bandera, Elisa V.;
Ingles, Sue A.;
Press, Michael F.;
Deming, Sandra L.;
Rodriguez-Gil, Jorge L.;
Chanock, Stephen J.;
Wan, Peggy;
Sheng, Xin;
Pooler, Loreall C.;
Van Den Berg, David J.

Publication type:

Article

Population Genetic Structure and Origins of Native Hawaiians in the Multiethnic Cohort Study.

Published in:

PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0047881

By:

Kim, Sung K.;
Gignoux, Christopher R.;
Wall, Jeffrey D.;
Lum-Jones, Annette;
Wang, Hansong;
Haiman, Christopher A.;
Chen, Gary K.;
Henderson, Brian E.;
Kolonel, Laurence N.;
Le Marchand, Loic;
Stram, Daniel O.;
Saxena, Richa;
Cheng, Iona

Publication type:

Article

Reproducibility, Performance, and Clinical Utility of a Genetic Risk Prediction Model for Prostate Cancer in Japanese.

Published in:

PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0046454

By:

Akamatsu, Shusuke;
Takahashi, Atsushi;
Takata, Ryo;
Kubo, Michiaki;
Inoue, Takahiro;
Morizono, Takashi;
Tsunoda, Tatsuhiko;
Kamatani, Naoyuki;
Haiman, Christopher A.;
Wan, Peggy;
Chen, Gary K.;
Le Marchand, Loic;
Kolonel, Laurence N.;
Henderson, Brian E.;
Fujioka, Tomoaki;
Habuchi, Tomonori;
Nakamura, Yusuke;
Ogawa, Osamu;
Nakagawa, Hidewaki

Publication type:

Article

Meta-analysis of loci associated with age at natural menopause in African-American women.

Published in:

Human Molecular Genetics, 2014, v. 23, n. 12, p. 3327, doi. 10.1093/hmg/ddu041

By:

Chen, Christina T.L.;
Liu, Ching-Ti;
Chen, Gary K.;
Andrews, Jeanette S.;
Arnold, Alice M.;
Dreyfus, Jill;
Franceschini, Nora;
Garcia, Melissa E.;
Kerr, Kathleen F.;
Li, Guo;
Lohman, Kurt K.;
Musani, Solomon K.;
Nalls, Michael A.;
Raffel, Leslie J.;
Smith, Jennifer;
Ambrosone, Christine B.;
Bandera, Elisa V.;
Bernstein, Leslie;
Britton, Angela;
Brzyski, Robert G.

Publication type:

Article

A meta-analysis of genome-wide association studies of breast cancer identifies two novel susceptibility loci at 6q14 and 20q11.

Published in:

Human Molecular Genetics, 2012, v. 21, n. 24, p. 5373

By:

Siddiq, Afshan;
Couch, Fergus J.;
Chen, Gary K.;
Lindström, Sara;
Eccles, Diana;
Millikan, Robert C.;
Michailidou, Kyriaki;
Stram, Daniel O.;
Beckmann, Lars;
Rhie, Suhn Kyong;
Ambrosone, Christine B.;
Aittomäki, Kristiina;
Amiano, Pilar;
Apicella, Carmel;
Baglietto, Laura;
Bandera, Elisa V.;
Beckmann, Matthias W.;
Berg, Christine D.;
Bernstein, Leslie;
Blomqvist, Carl

Publication type:

Article

Admixture mapping identifies a locus on 6q25 associated with breast cancer risk in US Latinas.

Published in:

Human Molecular Genetics, 2012, v. 21, n. 8, p. 1907, doi. 10.1093/hmg/ddr617

By:

Fejerman, Laura;
Chen, Gary K.;
Eng, Celeste;
Huntsman, Scott;
Hu, Donglei;
Williams, Amy;
Pasaniuc, Bogdan;
John, Esther M.;
Via, Marc;
Gignoux, Christopher;
Ingles, Sue;
Monroe, Kristine R.;
Kolonel, Laurence N.;
Torres-Mejía, Gabriela;
Pérez-Stable, Eliseo J.;
González Burchard, Esteban;
Henderson, Brian E.;
Haiman, Christopher A.;
Ziv, Elad

Publication type:

Article

Fine-mapping of breast cancer susceptibility loci characterizes genetic risk in African Americans.

Published in:

Human Molecular Genetics, 2011, v. 20, n. 22, p. 4491, doi. 10.1093/hmg/ddr367

By:

Chen, Fang;
Chen, Gary K.;
Millikan, Robert C.;
John, Esther M.;
Ambrosone, Christine B.;
Bernstein, Leslie;
Zheng, Wei;
Hu, Jennifer J.;
Ziegler, Regina G.;
Deming, Sandra L.;
Bandera, Elisa V.;
Nyante, Sarah;
Palmer, Julie R.;
Rebbeck, Timothy R.;
Ingles, Sue A.;
Press, Michael F.;
Rodriguez-Gil, Jorge L.;
Chanock, Stephen J.;
Le Marchand, Loïc;
Kolonel, Laurence N.

Publication type:

Article

Convex Clustering: An Attractive Alternative to Hierarchical Clustering.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004228

By:

Chen, Gary K.;
Chi, Eric C.;
Ranola, John Michael O.;
Lange, Kenneth

Publication type:

Article

Copy number alterations in prostate tumors and disease aggressiveness.

Published in:

Genes, Chromosomes & Cancer, 2012, v. 51, n. 1, p. 66, doi. 10.1002/gcc.20932

By:

Cheng, Iona;
Levin, Albert M.;
Tai, Yu Chuan;
Plummer, Sarah;
Chen, Gary K.;
Neslund-Dudas, Christine;
Casey, Graham;
Rybicki, Benjamin A.;
Witte, John S.

Publication type:

Article

Enhancing the discovery of rare disease variants through hierarchical modeling.

Published in:

BMC Proceedings, 2011, v. 5, n. Suppl 9, p. 1, doi. 10.1186/1753-6561-5-S9-S16

By:

Chen, Gary K.

Publication type:

Article

Genetic Variation in Native Americans, Inferred from Latino SNP and Resequencing Data.

Published in:

Molecular Biology & Evolution, 2011, v. 28, n. 8, p. 2231, doi. 10.1093/molbev/msr049

By:

Wall, Jeffrey D.;
Jiang, Rong;
Gignoux, Christopher;
Chen, Gary K.;
Eng, Celeste;
Huntsman, Scott;
Marjoram, Paul

Publication type:

Article

The landscape of recombination in African Americans.

Published in:

Nature, 2011, v. 476, n. 7359, p. 170, doi. 10.1038/nature10336

By:

Hinch, Anjali G.;
Tandon, Arti;
Patterson, Nick;
Song, Yunli;
Rohland, Nadin;
Palmer, Cameron D.;
Chen, Gary K.;
Kai Wang;
Buxbaum, Sarah G.;
Akylbekova, Ermeg L.;
Aldrich, Melinda C.;
Ambrosone, Christine B.;
Amos, Christopher;
Bandera, Elisa V.;
Berndt, Sonja I.;
Bernstein, Leslie;
Blot, William J.;
Bock, Cathryn H.;
Boerwinkle, Eric;
Qiuyin Cai

Publication type:

Article

Identification, Replication, and Fine-Mapping of Loci Associated with Adult Height in Individuals of African Ancestry.

Published in:

PLoS Genetics, 2011, v. 7, n. 10, p. 1, doi. 10.1371/journal.pgen.1002298

By:

N'Diaye, Amidou;
Chen, Gary K.;
Palmer, Cameron D.;
Ge, Bing;
Tayo, Bamidele;
Mathias, Rasika A.;
Ding, Jingzhong;
Nalls, Michael A.;
Adeyemo, Adebowale;
Adoue, Véronique;
Ambrosone, Christine B.;
Atwood, Larry;
Bandera, Elisa V.;
Becker, Lewis C.;
Berndt, Sonja I.;
Bernstein, Leslie;
Blot, William J.;
Boerwinkle, Eric;
Britton, Angela;
Casey, Graham

Publication type:

Article

Characterizing Genetic Risk at Known Prostate Cancer Susceptibility Loci in African Americans.

Published in:

PLoS Genetics, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pgen.1001387

By:

Haiman, Christopher A.;
Chen, Gary K.;
Blot, William J.;
Strom, Sara S.;
Berndt, Sonja I.;
Kittles, Rick A.;
Rybicki, Benjamin A.;
Isaacs, William B.;
Ingles, Sue A.;
Stanford, Janet L.;
Diver, W. Ryan;
Witte, John S.;
Chanock, Stephen J.;
Kolb, Suzanne;
Signorello, Lisa B.;
Yamamura, Yuko;
Neslund-Dudas, Christine;
Thun, Michael J.;
Murphy, Adam;
Casey, Graham

Publication type:

Article

Enhanced Statistical Tests for GWAS in Admixed Populations: Assessment using African Americans from CARe and a Breast Cancer Consortium.

Published in:

PLoS Genetics, 2011, v. 7, n. 4, p. 3, doi. 10.1371/journal.pgen.1001371

By:

Pasaniuc, Bogdan;
Zaitlen, Noah;
Lettre, Guillaume;
Chen, Gary K.;
Tandon, Arti;
Kao, W. H. Linda;
Ruczinski, Ingo;
Fornage, Myriam;
Siscovick, David S.;
Xiaofeng Zhu;
Larkin, Emma;
Lange, Leslie A.;
Cupples, L. Adrienne;
Qiong Yang;
Akylbekova, Ermeg L.;
Musani, Solomon K.;
Divers, Jasmin;
Mychaleckyj, Joe;
Mingyao Li;
Papanicolaou, George J.

Publication type:

Article