Works matching DE "BIOCONDUCTOR (Computer software)"
Results: 136
Analysing time course microarray data using Bioconductor: a case study using yeast2 Affymetrix arrays.
- Published in:
- 2010
- By:
- Publication type:
- Case Study
A collection of bioconductor methods to visualizegene-list annotations.
- Published in:
- BMC Research Notes, 2010, v. 3, p. 10, doi. 10.1186/1756-0500-3-10
- By:
- Publication type:
- Article
A Review of Meta-Analysis Packages in R.
- Published in:
- Journal of Educational & Behavioral Statistics, 2017, v. 42, n. 2, p. 206, doi. 10.3102/1076998616674315
- By:
- Publication type:
- Article
An intuitive Python interface for Bioconductor libraries demonstrates the utility of language translators.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S12-S11
- By:
- Publication type:
- Article
DFP: a Bioconductor package for fuzzy profile identification and gene reduction of microarray data.
- Published in:
- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-37
- By:
- Publication type:
- Article
Software for Computing and Annotating Genomic Ranges.
- Published in:
- PLoS Computational Biology, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.pcbi.1003118
- By:
- Publication type:
- Article
BeadArray Expression Analysis Using Bioconductor.
- Published in:
- PLoS Computational Biology, 2011, v. 7, n. 12, p. 1, doi. 10.1371/journal.pcbi.1002276
- By:
- Publication type:
- Article
Differential methylation analysis for bisulfite sequencing using DSS.
- Published in:
- Quantitative Biology, 2019, v. 7, n. 4, p. 327, doi. 10.1007/s40484-019-0183-8
- By:
- Publication type:
- Article
Detect tissue heterogeneity in gene expression data with BioQC.
- Published in:
- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3661-2
- By:
- Publication type:
- Article
Assessing genome-wide significance for the detection of differentially methylated regions.
- Published in:
- Statistical Applications in Genetics & Molecular Biology, 2018, v. 17, n. 5, p. N.PAG, doi. 10.1515/sagmb-2017-0050
- By:
- Publication type:
- Article
chromDraw: an R package for visualization of linear and circular karyotypes.
- Published in:
- Chromosome Research, 2016, v. 24, n. 2, p. 217, doi. 10.1007/s10577-015-9513-5
- By:
- Publication type:
- Article
runibic: a Bioconductor package for parallel row-based biclustering of gene expression data.
- Published in:
- Bioinformatics, 2018, v. 34, n. 24, p. 4302, doi. 10.1093/bioinformatics/bty512
- By:
- Publication type:
- Article
GenomicScores: seamless access to genomewide position-specific scores from R and Bioconductor.
- Published in:
- Bioinformatics, 2018, v. 34, n. 18, p. 3208, doi. 10.1093/bioinformatics/bty311
- By:
- Publication type:
- Article
DEsingle for detecting three types of differential expression in single-cell RNA-seq data.
- Published in:
- Bioinformatics, 2018, v. 34, n. 18, p. 3223, doi. 10.1093/bioinformatics/bty332
- By:
- Publication type:
- Article
CTDquerier: a bioconductor R package for Comparative Toxicogenomics DatabaseTM data extraction, visualization and enrichment of environmental and toxicological studies.
- Published in:
- Bioinformatics, 2018, v. 34, n. 18, p. 3235, doi. 10.1093/bioinformatics/bty326
- By:
- Publication type:
- Article
diffloop: a computational framework for identifying and analyzing differential DNA loops from sequencing data.
- Published in:
- Bioinformatics, 2018, v. 34, n. 4, p. 672, doi. 10.1093/bioinformatics/btx623
- By:
- Publication type:
- Article
Identification and visualization of differential isoform expression in RNA-seq time series.
- Published in:
- Bioinformatics, 2018, v. 34, n. 3, p. 524, doi. 10.1093/bioinformatics/btx578
- By:
- Publication type:
- Article
clustComp, a bioconductor package for the comparison of clustering results.
- Published in:
- Bioinformatics, 2017, v. 33, n. 24, p. 4001, doi. 10.1093/bioinformatics/btx532
- By:
- Publication type:
- Article
ClusterSignificance: a bioconductor package facilitating statistical analysis of class cluster separations in dimensionality reduced data.
- Published in:
- Bioinformatics, 2017, v. 33, n. 19, p. 3126, doi. 10.1093/bioinformatics/btx393
- By:
- Publication type:
- Article
RankProd 2.0: a refactored bioconductor package for detecting differentially expressed features in molecular profiling datasets.
- Published in:
- Bioinformatics, 2017, v. 33, n. 17, p. 2774, doi. 10.1093/bioinformatics/btx292
- By:
- Publication type:
- Article
twoddpcr: an R/Bioconductor package and Shiny app for Droplet Digital PCR analysis.
- Published in:
- Bioinformatics, 2017, v. 33, n. 17, p. 2743, doi. 10.1093/bioinformatics/btx308
- By:
- Publication type:
- Article
SeqArray--a storage-efficient high-performance data format for WGS variant calls.
- Published in:
- Bioinformatics, 2017, v. 33, n. 15, p. 2251, doi. 10.1093/bioinformatics/btx145
- By:
- Publication type:
- Article
DeepBlueR: large-scale epigenomic analysis in R.
- Published in:
- Bioinformatics, 2017, v. 33, n. 13, p. 2063, doi. 10.1093/bioinformatics/btx099
- By:
- Publication type:
- Article
annoPeak: a web application to annotate and visualize peaks from ChIP-seq/ChIP-exo-seq.
- Published in:
- Bioinformatics, 2017, v. 33, n. 10, p. 1570, doi. 10.1093/bioinformatics/btx016
- By:
- Publication type:
- Article
Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R.
- Published in:
- Bioinformatics, 2017, v. 33, n. 8, p. 1179, doi. 10.1093/bioinformatics/btw777
- By:
- Publication type:
- Article
miRNAmeConverter: an R/bioconductor package for translating mature miRNA names to different miRBase versions.
- Published in:
- Bioinformatics, 2017, v. 33, n. 4, p. 592, doi. 10.1093/bioinformatics/btw660
- By:
- Publication type:
- Article
Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi.
- Published in:
- Bioinformatics, 2017, v. 33, n. 4, p. 558, doi. 10.1093/bioinformatics/btw691
- By:
- Publication type:
- Article
QUBIC: a bioconductor package for qualitative biclustering analysis of gene co-expression data.
- Published in:
- Bioinformatics, 2017, v. 33, n. 3, p. 450, doi. 10.1093/bioinformatics/btw635
- By:
- Publication type:
- Article
GenVisR: Genomic Visualizations in R.
- Published in:
- Bioinformatics, 2016, v. 32, n. 19, p. 3012, doi. 10.1093/bioinformatics/btw325
- By:
- Publication type:
- Article
compendiumdb: an R package for retrieval and storage of functional genomics data.
- Published in:
- 2016
- By:
- Publication type:
- Question & Answer
PAA: an R/bioconductor package for biomarker discovery with protein microarrays.
- Published in:
- Bioinformatics, 2016, v. 32, n. 10, p. 1577, doi. 10.1093/bioinformatics/btw037
- By:
- Publication type:
- Article
DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
- Published in:
- Bioinformatics, 2016, v. 32, n. 8, p. 1211, doi. 10.1093/bioinformatics/btv735
- By:
- Publication type:
- Article
traseR: an R package for performing trait-associated SNP enrichment analysis in genomic intervals.
- Published in:
- Bioinformatics, 2016, v. 32, n. 8, p. 1214, doi. 10.1093/bioinformatics/btv741
- By:
- Publication type:
- Article
PaxtoolsR: pathway analysis in R using Pathway Commons.
- Published in:
- Bioinformatics, 2016, v. 32, n. 8, p. 1262, doi. 10.1093/bioinformatics/btv733
- By:
- Publication type:
- Article
Genefu: an R/Bioconductor package for computation of gene expression-based signatures in breast cancer.
- Published in:
- Bioinformatics, 2016, v. 32, n. 7, p. 1097, doi. 10.1093/bioinformatics/btv693
- By:
- Publication type:
- Article
iPQF: a new peptide-to-protein summarization method using peptide spectra characteristics to improve protein quantification.
- Published in:
- Bioinformatics, 2016, v. 32, n. 7, p. 1040, doi. 10.1093/bioinformatics/btv675
- By:
- Publication type:
- Article
TiMEx: a waiting time model for mutually exclusive cancer alterations.
- Published in:
- Bioinformatics, 2016, v. 32, n. 7, p. 968, doi. 10.1093/bioinformatics/btv400
- By:
- Publication type:
- Article
regioneR: an R/Bioconductor package for the association analysis of genomic regions based on permutation tests.
- Published in:
- Bioinformatics, 2016, v. 32, n. 2, p. 289, doi. 10.1093/bioinformatics/btv562
- By:
- Publication type:
- Article
msa: an R package for multiple sequence alignment.
- Published in:
- Bioinformatics, 2015, v. 31, n. 24, p. 3997, doi. 10.1093/bioinformatics/btv494
- By:
- Publication type:
- Article
SomaticSignatures: inferring mutational signatures from single-nucleotide variants.
- Published in:
- Bioinformatics, 2015, v. 31, n. 22, p. 3673, doi. 10.1093/bioinformatics/btv408
- By:
- Publication type:
- Article
Sincell: an R/Bioconductor package for statistical assessment of cell-state hierarchies from single-cell RNA-seq.
- Published in:
- Bioinformatics, 2015, v. 31, n. 20, p. 3380, doi. 10.1093/bioinformatics/btv368
- By:
- Publication type:
- Article
biRte: Bayesian inference of context-specific regulator activities and transcriptional networks.
- Published in:
- Bioinformatics, 2015, v. 31, n. 20, p. 3290, doi. 10.1093/bioinformatics/btv379
- By:
- Publication type:
- Article
COREGNET: reconstruction and integrated analysis of co-regulatory networks.
- Published in:
- Bioinformatics, 2015, v. 31, n. 18, p. 3066, doi. 10.1093/bioinformatics/btv305
- By:
- Publication type:
- Article
Seq2pathway: an R/Bioconductor package for pathway analysis of next-generation sequencing data.
- Published in:
- Bioinformatics, 2015, v. 31, n. 18, p. 3043, doi. 10.1093/bioinformatics/btv289
- By:
- Publication type:
- Article
Rcpi: R/Bioconductor package to generate various descriptors of proteins, compounds and their interactions.
- Published in:
- 2015
- By:
- Publication type:
- Product Review
Chimera: a Bioconductor package for secondary analysis of fusion products.
- Published in:
- Bioinformatics, 2014, v. 30, n. 24, p. 3556, doi. 10.1093/bioinformatics/btu662
- By:
- Publication type:
- Article
Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data.
- Published in:
- Bioinformatics, 2014, v. 30, n. 22, p. 3268, doi. 10.1093/bioinformatics/btu497
- By:
- Publication type:
- Article
sapFinder: an R/Bioconductor package for detection of variant peptides in shotgun proteomics experiments.
- Published in:
- Bioinformatics, 2014, v. 30, n. 21, p. 3136, doi. 10.1093/bioinformatics/btu397
- By:
- Publication type:
- Article
NetPathMiner: R/Bioconductor package for network path mining through gene expression.
- Published in:
- Bioinformatics, 2014, v. 30, n. 21, p. 3139, doi. 10.1093/bioinformatics/btu501
- By:
- Publication type:
- Article
Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series.
- Published in:
- Bioinformatics, 2014, v. 30, n. 18, p. 2598, doi. 10.1093/bioinformatics/btu333
- By:
- Publication type:
- Article