Works matching AU Degui Zhi

Results: 91

Public Perception Analysis of Tweets During the 2015 Measles Outbreak: Comparative Study Using Convolutional Neural Network Models.

Published in:

2018

By:

Jingcheng Du;
Lu Tang;
Yang Xiang;
Degui Zhi;
Jun Xu;
Hsing-Yi Song;
Cui Tao;
Du, Jingcheng;
Tang, Lu;
Xiang, Yang;
Zhi, Degui;
Xu, Jun;
Song, Hsing-Yi;
Tao, Cui

Publication type:

journal article

Oxidative Modifications of Protein Tyrosyl Residues Are Increased in Plasma of Human Subjects with Interstitial Lung Disease.

Published in:

2016

By:

Pennathur, Subramaniam;
Vivekanandan-Giri, Anuradha;
Locy, Morgan L.;
Kulkarni, Tejaswini;
Degui Zhi;
Lixia Zeng;
Byun, Jaeman;
de Andrade, Joao A.;
Thannickal, Victor J.;
Zhi, Degui;
Zeng, Lixia

Publication type:

journal article

iGTP: learning interpretable cellular embedding for inferring biological mechanisms underlying single-cell transcriptomics Open Access.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 3, p. 1, doi. 10.1093/bib/bbaf296

By:

Hsieh, Kang-Lin;
Zhang, Kai;
Chu, Yan;
Yu, Lishan;
Li, Xiaoyang;
Hu, Nuo;
Kawosa, Isha;
Pilié, Patrick G;
Bhattacharya, Pratip K;
Zhi, Degui;
Jiang, Xiaoqian;
Zhao, Zhongming;
Dai, Yulin

Publication type:

Article

Haplotype Kernel Association Test as a Powerful Method to Identify Chromosomal Regions Harboring Uncommon Causal Variants.

Published in:

Genetic Epidemiology, 2013, v. 37, n. 6, p. 560, doi. 10.1002/gepi.21740

By:

Lin, Wan‐Yu;
Yi, Nengjun;
Lou, Xiang‐Yang;
Zhi, Degui;
Zhang, Kui;
Gao, Guimin;
Tiwari, Hemant K.;
Liu, Nianjun

Publication type:

Article

Pathway-Based Approaches for Sequencing-Based Genome-Wide Association Studies.

Published in:

Genetic Epidemiology, 2013, v. 37, n. 5, p. 478, doi. 10.1002/gepi.21728

By:

Wu, Guodong;
Zhi, Degui

Publication type:

Article

Haplotype-Based Methods for Detecting Uncommon Causal Variants With Common SNPs.

Published in:

Genetic Epidemiology, 2012, v. 36, n. 6, p. 572, doi. 10.1002/gepi.21650

By:

Lin, Wan-Yu;
Yi, Nengjun;
Zhi, Degui;
Zhang, Kui;
Gao, Guimin;
Tiwari, Hemant K.;
Liu, Nianjun

Publication type:

Article

Bayesian analysis of rare variants in genetic association studies.

Published in:

Genetic Epidemiology, 2011, v. 35, n. 1, p. 57, doi. 10.1002/gepi.20554

By:

Yi, Nengjun;
Zhi, Degui

Publication type:

Article

Discovery of runs-of-homozygosity diplotype clusters and their associations with diseases in UK Biobank.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.816981

By:

Naseri, Ardalan;
Degui Zhi;
Shaojie Zhang

Publication type:

Article

Open-source benchmarking of IBD segment detection methods for biobank-scale cohorts.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac111

By:

Tang, Kecong;
Naseri, Ardalan;
Wei, Yuan;
Zhang, Shaojie;
Zhi, Degui

Publication type:

Article

RaPID: ultra-fast, powerful, and accurate detection of segments identical by descent (IBD) in biobank-scale cohorts.

Published in:

Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1754-8

By:

Naseri, Ardalan;
Liu, Xiaoming;
Tang, Kecong;
Zhang, Shaojie;
Zhi, Degui

Publication type:

Article

The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: systems biology on diverse data types.

Published in:

BMC Systems Biology, 2018, v. 12, n. 8, p. N.PAG, doi. 10.1186/s12918-018-0648-9

By:

Wang, Kai;
Liu, Xiaoming;
Guo, Yan;
Wu, Zhijin;
Zhi, Degui;
Ruan, Jianhua;
Zhao, Zhongming

Publication type:

Article

Brain imaging endophenotypes by unsupervised deep learning.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2023, v. 19, p. 1, doi. 10.1002/alz.074788

By:

Zhi, Degui

Publication type:

Article

The Bioenergetic Health Index: a new concept in mitochondrial translational research.

Published in:

Clinical Science, 2014, v. 127, n. 6, p. 367, doi. 10.1042/CS20140101

By:

CHACKO, Balu K.;
KRAMER, Philip A.;
RAVI, Saranya;
BENAVIDES, Gloria A.;
MITCHELL, Tanecia;
DRANKA, Brian P.;
FERRICK, David;
SINGAL, Ashwani K.;
BALLINGER, Scott W.;
BAILEY, Shannon M.;
HARDY, Robert W.;
Jianhua ZHANG;
Degui ZHI;
DARLEY-USMAR, Victor M.

Publication type:

Article

The Bioenergetic Health Index: a new concept in mitochondrial translational research.

Published in:

Clinical Science, 2014, v. 127, n. 5, p. 367, doi. 10.1042/CS20140101

By:

CHACKO, Balu K.;
KRAMER, Philip A.;
RAVI, Saranya;
BENAVIDES, Gloria A.;
MITCHELL, Tanecia;
DRANKA, Brian P.;
FERRICK, David;
SINGAL, Ashwani K.;
BALLINGER, Scott W.;
BAILEY, Shannon M.;
HARDY, Robert W.;
ZHANG, Jianhua;
ZHI, Degui;
DARLEY-USMAR, Victor M.

Publication type:

Article

Vitronectin Inhibits Neutrophil Apoptosis through Activation of Integrin-Associated Signaling Pathways.

Published in:

American Journal of Respiratory Cell & Molecular Biology, 2012, v. 46, n. 6, p. 790, doi. 10.1165/rcmb.2011-0187OC

By:

Bae, Hong-Beom;
Zmijewski, Jaroslaw W.;
Deshane, Jessy S.;
Zhi, Degui;
Thompson, Lawrence C.;
Peterson, Cynthia B.;
Chaplin, David D.;
Abraham, Edward

Publication type:

Article

APOL1 nephropathy risk variants are associated with altered high-density lipoprotein profiles in African Americans.

Published in:

Nephrology Dialysis Transplantation, 2016, v. 31, n. 4, p. 602, doi. 10.1093/ndt/gfv229

By:

Gutiérrez, Orlando M.;
Judd, Suzanne E.;
Irvin, Marguerite R.;
Degui Zhi;
Limdi, Nita;
Palmer, Nicholette D.;
Rich, Stephen S.;
Sale, Michèle M.;
Freedman, Barry I.

Publication type:

Article

RaPID-Query for fast identity by descent search and genealogical analysis.

Published in:

Bioinformatics, 2023, v. 39, n. 6, p. 1, doi. 10.1093/bioinformatics/btad312

By:

Wei, Yuan;
Naseri, Ardalan;
Zhi, Degui;
Zhang, Shaojie

Publication type:

Article

Syllable-PBWT for space-efficient haplotype long-match query.

Published in:

Bioinformatics, 2023, v. 39, n. 1, p. 1, doi. 10.1093/bioinformatics/btac734

By:

Wang, Victor;
Naseri, Ardalan;
Zhang, Shaojie;
Zhi, Degui

Publication type:

Article

d-PBWT: dynamic positional Burrows–Wheeler transform.

Published in:

Bioinformatics, 2021, v. 37, n. 16, p. 2390, doi. 10.1093/bioinformatics/btab117

By:

Sanaullah, Ahsan;
Zhi, Degui;
Zhang, Shaojie

Publication type:

Article

Deep sequencing of RYR3 gene identifies rare and common variants associated with increased carotid intima-media thickness (cIMT) in HIV-infected individuals.

Published in:

Journal of Human Genetics, 2015, v. 60, n. 2, p. 63, doi. 10.1038/jhg.2014.104

By:

Zhi, Degui;
Shendre, Aditi;
Scherzer, Rebecca;
Irvin, Marguerite R;
Perry, Rodney T;
Levy, Shawn;
Arnett, Donna K;
Grunfeld, Carl;
Shrestha, Sadeep

Publication type:

Article

AliWABA: alignment on the web through an A-Bruijn approach.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w613, doi. 10.1093/nar/gkl288

By:

Jones, Neil C.;
Zhi, Degui;
Raphael, Benjamin J.

Publication type:

Article

Evaluation of association tests for rare variants using simulated data sets in the Genetic Analysis Workshop 17 data.

Published in:

BMC Proceedings, 2011, v. 5, n. Suppl 9, p. 1, doi. 10.1186/1753-6561-5-S9-S86

By:

Wenan Chen;
Xi Gao;
Jiexun Wang;
Chuanyu Sun;
Wen Wan;
Degui Zhi;
Nianjun Liu;
Xiangning Chen;
Guimin Gao

Publication type:

Article

iDASH secure genome analysis competition 2018: blockchain genomic data access logging, homomorphic encryption on GWAS, and DNA segment searching.

Published in:

2020

By:

Kuo, Tsung-Ting;
Jiang, Xiaoqian;
Tang, Haixu;
Wang, XiaoFeng;
Bath, Tyler;
Bu, Diyue;
Wang, Lei;
Harmanci, Arif;
Zhang, Shaojie;
Zhi, Degui;
Sofia, Heidi J.;
Ohno-Machado, Lucila

Publication type:

Editorial

A PheWAS study of a large observational epidemiological cohort of African Americans from the REGARDS study.

Published in:

BMC Medical Genomics, 2019, v. 12, n. 1, p. 1, doi. 10.1186/s12920-018-0462-7

By:

Zhao, Xueyan;
Geng, Xin;
Srinivasasainagendra, Vinodh;
Chaudhary, Ninad;
Judd, Suzanne;
Wadley, Virginia;
Gutiérrez, Orlando M.;
Wang, Henry;
Lange, Ethan M.;
Lange, Leslie A.;
Woo, Daniel;
Unverzagt, Frederick W.;
Safford, Monika;
Cushman, Mary;
Limdi, Nita;
Quarells, Rakale;
Arnett, Donna K.;
Irvin, Marguerite R.;
Zhi, Degui

Publication type:

Article

The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: genomics meets medicine.

Published in:

2019

By:

Zhi, Degui;
Zhao, Zhongming;
Li, Fuhai;
Wu, Zhijin;
Liu, Xiaoming;
Wang, Kai

Publication type:

Editorial

Decreased Bioenergetic Health Index in monocytes isolated from the pericardial fluid and blood of post-operative cardiac surgery patients.

Published in:

Bioscience Reports, 2015, v. 35, n. 4, p. 1, doi. 10.1042/BSR20150161

By:

Kramer, Philip A.;
Chacko, Balu K.;
George, David J.;
Zhi, Degui;
Wei, Chih-Cheng;
Dell’Italia, Louis J.;
Melby, Spencer J.;
George, James F.;
Darley-Usmar, Victor M.

Publication type:

Article

Gene2vec: distributed representation of genes based on co-expression.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-018-5370-x

By:

Du, Jingcheng;
Jia, Peilin;
Dai, Yulin;
Tao, Cui;
Zhao, Zhongming;
Zhi, Degui

Publication type:

Article

The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: genomics with bigger data and wider applications.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-018-5369-3

By:

Wu, Zhijin;
Yan, Jingwen;
Wang, Kai;
Liu, Xiaoming;
Guo, Yan;
Zhi, Degui;
Ruan, Jianhua;
Zhao, Zhongming

Publication type:

Article

Toward a standard formal semantic representation of the model card report.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04797-6

By:

Amith, Muhammad Tuan;
Cui, Licong;
Zhi, Degui;
Roberts, Kirk;
Jiang, Xiaoqian;
Li, Fang;
Yu, Evan;
Tao, Cui

Publication type:

Article

Hierarchical Generalized Linear Models for Multiple Groups of Rare and Common Variants: Jointly Estimating Group and Individual-Variant Effects.

Published in:

PLoS Genetics, 2011, v. 7, n. 12, p. 1, doi. 10.1371/journal.pgen.1002382

By:

Nengjun Yi;
Ninjun Liu;
Degui Zhi;
Jun Li

Publication type:

Article

Association of Body Mass Index with DNA Methylation and Gene Expression in Blood Cells and Relations to Cardiometabolic Disease: A Mendelian Randomization Approach.

Published in:

2017

By:

Mendelson, Michael M.;
Marioni, Riccardo E.;
Joehanes, Roby;
Liu, Chunyu;
Hedman, Åsa K.;
Aslibekyan, Stella;
Demerath, Ellen W.;
Guan, Weihua;
Zhi, Degui;
Yao, Chen;
Huan, Tianxiao;
Willinger, Christine;
Chen, Brian;
Courchesne, Paul;
Multhaup, Michael;
Irvin, Marguerite R.;
Cohain, Ariella;
Schadt, Eric E.;
Grove, Megan L.;
Bressler, Jan

Publication type:

journal article

Gravidas with class III obesity: evaluating the abdominal skin microbiota above and below the panniculus (.).

Published in:

2016

By:

Edwards, Rodney K.;
Kumar, Ranjit;
Zhi, Degui;
Szychowski, Jeffrey;
Subramaniam, Akila;
Lefkowitz, Elliot J.;
Morrow, Casey

Publication type:

journal article

Epigenome-wide study identifies novel methylation loci associated with body mass index and waist circumference.

Published in:

Obesity (19307381), 2015, v. 23, n. 7, p. 1493, doi. 10.1002/oby.21111

By:

Aslibekyan, Stella;
Demerath, Ellen W.;
Mendelson, Michael;
Zhi, Degui;
Guan, Weihua;
Liang, Liming;
Sha, Jin;
Pankow, James S.;
Liu, Chunyu;
Irvin, Marguerite R.;
Fornage, Myriam;
Hidalgo, Bertha;
Lin, Li‐An;
Stanton Thibeault, Krista;
Bressler, Jan;
Tsai, Michael Y.;
Grove, Megan L.;
Hopkins, Paul N.;
Boerwinkle, Eric;
Borecki, Ingrid B.

Publication type:

Article

Local Ancestry and Clinical Cardiovascular Events Among African Americans From the Atherosclerosis Risk in Communities Study.

Published in:

2017

By:

Shendre, Aditi;
Irvin, Marguerite R.;
Wiener, Howard;
Zhi, Degui;
Limdi, Nita A.;
Overton, Edgar T.;
Shrestha, Sadeep

Publication type:

journal article

Linking DNA methylation in brain regions to Alzheimer's disease risk: a Mendelian randomization study.

Published in:

Human Molecular Genetics, 2025, v. 34, n. 12, p. 1026, doi. 10.1093/hmg/ddaf053

By:

Zhong, Hua;
Zhu, Jingjing;
Liu, Shuai;
Zhou, Dan;
Long, Quan;
Wu, Chong;
Zhao, Bingxin;
Cheng, Chao;
Yang, Yaohua;
Wu, Qing;
Wu, Yong;
Li, Changwei;
Wang, Zhaoming;
Wu, Jianyong;
Guo, Xingyi;
Zhi, Degui;
Deng, Youping;
Wu, Lang

Publication type:

Article

A Genome-Wide Association Study Identi?es Multiple Regions Associated with Head Size in Cat?sh.

Published in:

G3: Genes | Genomes | Genetics, 2016, v. 6, n. 10, p. 3389, doi. 10.1534/g3.116.032201

By:

Xin Geng;
Shikai Liu;
Jun Yao;
Lisui Bao;
Jiaren Zhang;
Chao Li;
Ruijia Wang;
Jin Sha;
Peng Zeng;
Degui Zhi;
Zhanjiang Liu

Publication type:

Article

Heritable DNA Methylation in CD4+ Cells among Complex Families Displays Genetic and Non-Genetic Effects.

Published in:

PLoS ONE, 2016, v. 11, n. 10, p. 1, doi. 10.1371/journal.pone.0165488

By:

Day, Kenneth;
Waite, Lindsay L.;
Alonso, Arnald;
Irvin, Marguerite R.;
Degui Zhi;
Thibeault, Krista S.;
Aslibekyan, Stella;
Hidalgo, Bertha;
Borecki, Ingrid B.;
Ordovas, Jose M.;
Arnett, Donna K.;
Tiwari, Hemant K.;
Absher, Devin M.

Publication type:

Article

An Optimal Bahadur-Efficient Method in Detection of Sparse Signals with Applications to Pathway Analysis in Sequencing Association Studies.

Published in:

PLoS ONE, 2016, v. 11, n. 7, p. 1, doi. 10.1371/journal.pone.0152667

By:

Dai, Hongying;
Wu, Guodong;
Wu, Michael;
Zhi, Degui

Publication type:

Article

Association of DNA Methylation at CPT1A Locus with Metabolic Syndrome in the Genetics of Lipid Lowering Drugs and Diet Network (GOLDN) Study.

Published in:

PLoS ONE, 2016, v. 11, n. 1, p. 1, doi. 10.1371/journal.pone.0145789

By:

Das, Mithun;
Sha, Jin;
Hidalgo, Bertha;
Aslibekyan, Stella;
Do, Anh N.;
Zhi, Degui;
Sun, Dianjianyi;
Zhang, Tao;
Li, Shengxu;
Chen, Wei;
Srinivasan, Sathanur R.;
Tiwari, Hemant K.;
Absher, Devin;
Ordovas, Jose M.;
Berenson, Gerald S.;
Arnett, Donna K.;
Irvin, Marguerite R.

Publication type:

Article

Multi-allelic positional Burrows-Wheeler transform.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 11, p. 1, doi. 10.1186/s12859-019-2821-6

By:

Naseri, Ardalan;
Zhi, Degui;
Zhang, Shaojie

Publication type:

Article

The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: bioinformatics towards translational applications.

Published in:

2018

By:

Liu, Xiaoming;
Xie, Lei;
Wu, Zhijin;
Wang, Kai;
Zhao, Zhongming;
Ruan, Jianhua;
Zhi, Degui

Publication type:

Proceeding

Author Correction: Identification of donor microbe species that colonize and persist long term in the recipient after fecal transplant for recurrent Clostridium difficile.

Published in:

2017

By:

Kumar, Ranjit;
Yi, Nengjun;
Zhi, Degui;
Eipers, Peter;
Goldsmith, Kelly T.;
Dixon, Paula;
Crossman, David K.;
Crowley, Michael R.;
Lefkowitz, Elliot J.;
Rodriguez, J. Martin;
Morrow, Casey D.

Publication type:

Correction Notice

Identification of donor microbe species that colonize and persist long term in the recipient after fecal transplant for recurrent Clostridium difficile.

Published in:

NPJ Biofilms & Microbiomes, 2017, v. 3, n. 1, p. N.PAG, doi. 10.1038/s41522-017-0020-7

By:

Kumar, Ranjit;
Yi, Nengjun;
Zhi, Degui;
Eipers, Peter;
Goldsmith, Kelly T.;
Dixon, Paula;
Crossman, David K.;
Crowley, Michael R.;
Lefkowitz, Elliot J.;
Rodriguez, J. Martin;
Morrow, Casey D.

Publication type:

Article

Metabolic and inflammatory biomarkers are associated with epigenetic aging acceleration estimates in the GOLDN study.

Published in:

Clinical Epigenetics, 2018, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13148-018-0481-4

By:

Irvin, Marguerite R.;
Aslibekyan, Stella;
Do, Anh;
Zhi, Degui;
Hidalgo, Bertha;
Claas, Steven A.;
Srinivasasainagendra, Vinodh;
Horvath, Steve;
Tiwari, Hemant K.;
Absher, Devin M.;
Arnett, Donna K.

Publication type:

Article

Epigenome-wide association study of metabolic syndrome in African-American adults.

Published in:

Clinical Epigenetics, 2018, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13148-018-0483-2

By:

Akinyemiju, Tomi;
Do, Anh N.;
Patki, Amit;
Aslibekyan, Stella;
Zhi, Degui;
Hidalgo, Bertha;
Tiwari, Hemant K.;
Absher, Devin;
Geng, Xin;
Arnett, Donna K.;
Irvin, Marguerite R.

Publication type:

Article

MetaRNN: differentiating rare pathogenic and rare benign missense SNVs and InDels using deep learning.

Published in:

Genome Medicine, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13073-022-01120-z

By:

Li, Chang;
Zhi, Degui;
Wang, Kai;
Liu, Xiaoming

Publication type:

Article

Genome-wide admixture and association study of subclinical atherosclerosis in the Women’s Interagency HIV Study (WIHS).

Published in:

PLoS ONE, 2017, v. 12, n. 12, p. 1, doi. 10.1371/journal.pone.0188725

By:

Shendre, Aditi;
Wiener, Howard W.;
Irvin, Marguerite R.;
Aouizerat, Bradley E.;
Overton, Edgar T.;
Lazar, Jason;
Liu, Chenglong;
Hodis, Howard N.;
Limdi, Nita A.;
Weber, Kathleen M.;
Gange, Stephen J.;
Zhi, Degui;
Floris-Moore, Michelle A.;
Ofotokun, Ighovwerha;
Qi, Qibin;
Hanna, David B.;
Kaplan, Robert C.;
Shrestha, Sadeep

Publication type:

Article

Recombination-Associated Sequence Homogenization of Neighboring Alu Elements: Signature of Nonallelic Gene Conversion.

Published in:

Molecular Biology & Evolution, 2010, v. 27, n. 10, p. 2300, doi. 10.1093/molbev/msq116

By:

Aleshin, Alexey;
Zhi, Degui

Publication type:

Article

Cyclosporine-mediated allograft fibrosis is associated with micro- RNA-21 through AKT signaling.

Published in:

Transplant International, 2015, v. 28, n. 2, p. 232, doi. 10.1111/tri.12471

By:

Chen, Jianguo;
Zmijewska, Anna;
Zhi, Degui;
Mannon, Roslyn B.

Publication type:

Article

Efficient haplotype matching between a query and a panel for genealogical search.

Published in:

Bioinformatics, 2019, v. 35, n. 14, p. i233, doi. 10.1093/bioinformatics/btz347

By:

Naseri, Ardalan;
Holzhauser, Erwin;
Zhi, Degui;
Zhang, Shaojie

Publication type:

Article