Works matching Cram, Jacob

Results: 31

Quantitative microbial taxonomy across particle size, depth, and oxygen concentration.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1552305

By:

Huanca-Valenzuela, Paulina;
Fuchsman, Clara A.;
Tully, Benjamin J.;
Sylvan, Jason B.;
Cram, Jacob A.

Publication type:

Article

Vertical and Seasonal Patterns Control Bacterioplankton Communities at Two Horizontally Coherent Coastal Upwelling Sites off Galicia (NW Spain).

Published in:

Microbial Ecology, 2018, v. 76, n. 4, p. 866, doi. 10.1007/s00248-018-1179-z

By:

Hernando-Morales, Víctor;
Varela, Marta M.;
Needham, David M.;
Cram, Jacob;
Fuhrman, Jed A.;
Teira, Eva

Publication type:

Article

Efficient statistical significance approximation for local similarity analysis of high-throughput time series data.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 230, doi. 10.1093/bioinformatics/bts668

By:

Xia, Li C.;
Ai, Dongmei;
Cram, Jacob;
Fuhrman, Jed A.;
Sun, Fengzhu

Publication type:

Article

Microbial diversity and abundance vary along salinity, oxygen, and particle size gradients in the Chesapeake Bay.

Published in:

Environmental Microbiology, 2024, v. 26, n. 1, p. 1, doi. 10.1111/1462-2920.16557

By:

Cram, Jacob A.;
Hollins, Ashley;
McCarty, Alexandra J.;
Martinez, Grace;
Cui, Minming;
Gomes, Maya L.;
Fuchsman, Clara A.

Publication type:

Article

Deep photoautotrophic prokaryotes contribute substantially to carbon dynamics in oxygen‐deficient waters in a permanently redox‐stratified freshwater lake.

Published in:

Limnology & Oceanography, 2023, v. 68, n. 1, p. 232, doi. 10.1002/lno.12262

By:

Cohen, Ashley B.;
Klepac‐Ceraj, Vanja;
Bidas, Kristen;
Weber, Felix;
Garber, Arkadiy I.;
Christensen, Lisa N.;
Cram, Jacob A.;
McCormick, Michael L.;
Taylor, Gordon T.

Publication type:

Article

Dilution reveals how viral lysis and grazing shape microbial communities.

Published in:

Limnology & Oceanography, 2016, v. 61, n. 3, p. 889, doi. 10.1002/lno.10259

By:

Cram, Jacob A.;
Parada, Alma E.;
Fuhrman, Jed A.

Publication type:

Article

Accurate Genome Relative Abundance Estimation Based on Shotgun Metagenomic Reads.

Published in:

PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0027992

By:

Xia, Li C.;
Cram, Jacob A.;
Chen, Ting;
Fuhrman, Jed A.;
Sun, Fengzhu

Publication type:

Article

Niche differentiation in microorganisms capable of using alternative reduced nitrogen sources studied across depth and between oxic and anoxic ocean regions.

Published in:

Frontiers in Marine Science, 2024, p. 1, doi. 10.3389/fmars.2024.1386686

By:

Huanca-Valenzuela, Paulina;
Cram, Jacob A.;
Fuchsman, Clara A.

Publication type:

Article

Quantifying the linkages between California sea lion (Zalophus californianus) strandings and particulate domoic acid concentrations at piers across Southern California.

Published in:

Frontiers in Marine Science, 2023, p. 1, doi. 10.3389/fmars.2023.1278293

By:

Smith, Jayme;
Cram, Jacob A.;
Berndt, Malena P.;
Hoard, Vanessa;
Shultz, Dana;
Deming, Alissa C.

Publication type:

Article

New insights into relationships between active and dormant organisms, phylogenetic diversity and ecosystem productivity.

Published in:

Molecular Ecology, 2015, v. 24, n. 23, p. 5767, doi. 10.1111/mec.13449

By:

Cram, Jacob A.

Publication type:

Article

Dynamics and interactions of highly resolved marine plankton via automated high-frequency sampling.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2018, v. 12, n. 10, p. 2417, doi. 10.1038/s41396-018-0169-y

By:

Needham, David M.;
Fichot, Erin B.;
Wang, Ellice;
Berdjeb, Lyria;
Cram, Jacob A.;
Fichot, Cédric G.;
Fuhrman, Jed A.

Publication type:

Article

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 7, p. 1669, doi. 10.1038/ismej.2015.235

By:

Weiss, Sophie;
Van Treuren, Will;
Lozupone, Catherine;
Faust, Karoline;
Friedman, Jonathan;
Deng, Ye;
Xia, Li Charlie;
Xu, Zhenjiang Zech;
Ursell, Luke;
Alm, Eric J;
Birmingham, Amanda;
Cram, Jacob A;
Fuhrman, Jed A;
Raes, Jeroen;
Sun, Fengzhu;
Zhou, Jizhong;
Knight, Rob

Publication type:

Article

Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 12, p. 2573, doi. 10.1038/ismej.2015.76

By:

Cram, Jacob A;
Xia, Li C;
Needham, David M;
Sachdeva, Rohan;
Sun, Fengzhu;
Fuhrman, Jed A

Publication type:

Article

Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 3, p. 563, doi. 10.1038/ismej.2014.153

By:

Cram, Jacob A;
Chow, Cheryl-Emiliane T;
Sachdeva, Rohan;
Needham, David M;
Parada, Alma E;
Steele, Joshua A;
Fuhrman, Jed A

Publication type:

Article

Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 12, p. 2259, doi. 10.1038/ismej.2013.122

By:

Chow, Cheryl-Emiliane T;
Sachdeva, Rohan;
Cram, Jacob A;
Steele, Joshua A;
Needham, David M;
Patel, Anand;
Parada, Alma E;
Fuhrman, Jed A

Publication type:

Article

Short-term observations of marine bacterial and viral communities: patterns, connections and resilience.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 7, p. 1274, doi. 10.1038/ismej.2013.19

By:

Needham, David M;
Chow, Cheryl-Emiliane T;
Cram, Jacob A;
Sachdeva, Rohan;
Parada, Alma;
Fuhrman, Jed A

Publication type:

Article

Statistical significance approximation in local trend analysis of high-throughput time-series data using the theory of Markov chains.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0732-8

By:

Xia, Li C.;
Dongmei Ai;
Cram, Jacob A.;
Xiaoyi Liang;
Fuhrman, Jed A.;
Fengzhu Sun

Publication type:

Article

Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-5-S2-S15

By:

Xia, Li C.;
Steele, Joshua A.;
Cram, Jacob A.;
Cardon, Zoe G.;
Simmons, Sheri L.;
Vallino, Joseph J.;
Fuhrman, Jed A.;
Sun, Fengzhu

Publication type:

Article

Declines of Suspended Particle Abundances in the Oxygen-Deficient Zone of the Chesapeake Bay.

Published in:

Estuaries & Coasts, 2025, v. 48, n. 1, p. 1, doi. 10.1007/s12237-024-01464-2

By:

Dougherty, Emily C.;
Hollins, Ashley;
Cram, Jacob A.

Publication type:

Article

Contributions of Vertically Migrating Metazoans to Sinking and Suspended Particulate Matter Fuel N<sub>2</sub> Production in the Eastern Tropical North Pacific Oxygen Deficient Zone.

Published in:

Global Biogeochemical Cycles, 2025, v. 39, n. 3, p. 1, doi. 10.1029/2024GB008365

By:

Fuchsman, Clara A.;
Duffy, Megan E.;
Cram, Jacob A.;
Huanca‐Valenzuela, Paulina;
Gregory, Benjamin P.;
Plough, Louis V.;
Pierson, James J.;
Fitzgerald, Catherine L.;
Devol, Allan H.;
Keil, Richard G.

Publication type:

Article

Variable phytoplankton size distributions reduce the sensitivity of global export flux to climate change.

Published in:

Biogeosciences Discussions, 2020, p. 1

By:

Leung, Shirley W.;
Weber, Thomas;
Cram, Jacob A.;
Deutsch, Curtis

Publication type:

Article

Microbial community structure variability over the development of healthy and underperforming oyster larval hatchery broods.

Published in:

Frontiers in Aquaculture, 2024, p. 1, doi. 10.3389/faquc.2024.1427405

By:

Cram, Jacob A.;
McCarty, Alexandra J.;
Willey, Stacey M.;
Alexander, Stephanie T.

Publication type:

Article

Microbial community structure variability over the development of healthy and underperforming oyster larval hatchery broods.

Published in:

Frontiers in Aquaculture, 2024, p. 1, doi. 10.3389/faquc.2024.1427405

By:

Cram, Jacob A.;
McCarty, Alexandra J.;
Willey, Stacey M.;
Alexander, Stephanie T.

Publication type:

Article

Microbial community structure variability over the development of healthy and underperforming oyster larval hatchery broods.

Published in:

Frontiers in Aquaculture, 2024, p. 1, doi. 10.3389/faquc.2024.1427405

By:

Cram, Jacob A.;
McCarty, Alexandra J.;
Willey, Stacey M.;
Alexander, Stephanie T.

Publication type:

Article

Slow Particle Remineralization, Rather Than Suppressed Disaggregation, Drives Efficient Flux Transfer Through the Eastern Tropical North Pacific Oxygen Deficient Zone.

Published in:

Global Biogeochemical Cycles, 2022, v. 36, n. 1, p. 1, doi. 10.1029/2021GB007080

By:

Cram, Jacob A.;
Fuchsman, Clara A.;
Duffy, Megan E.;
Pretty, Jessica L.;
Lekanoff, Rachel M.;
Neibauer, Jacquelyn A.;
Leung, Shirley W.;
Huebert, Klaus B.;
Weber, Thomas S.;
Bianchi, Daniele;
Evans, Natalya;
Devol, Allan H.;
Keil, Richard G.;
McDonnell, Andrew M. P.

Publication type:

Article

The Role of Particle Size, Ballast, Temperature, and Oxygen in the Sinking Flux to the Deep Sea.

Published in:

Global Biogeochemical Cycles, 2018, v. 32, n. 5, p. 858, doi. 10.1029/2017GB005710

By:

Cram, Jacob A.;
Weber, Thomas;
Leung, Shirley W.;
McDonnell, Andrew M. P.;
Liang, Jun‐Hong;
Deutsch, Curtis

Publication type:

Article

Marine microbial community dynamics and their ecological interpretation.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 3, p. 133, doi. 10.1038/nrmicro3417

By:

Fuhrman, Jed A.;
Cram, Jacob A.;
Needham, David M.

Publication type:

Article

Human gut microbiota is associated with HIV-reactive immunoglobulin at baseline and following HIV vaccination.

Published in:

PLoS ONE, 2019, v. 14, n. 12, p. N.PAG, doi. 10.1371/journal.pone.0225622

By:

Cram, Jacob A.;
Fiore-Gartland, Andrew J.;
Srinivasan, Sujatha;
Karuna, Shelly;
Pantaleo, Giuseppe;
Tomaras, Georgia D.;
Fredricks, David N.;
Kublin, James G.

Publication type:

Article

Variable particle size distributions reduce the sensitivity of global export flux to climate change.

Published in:

Biogeosciences, 2021, v. 18, n. 1, p. 229, doi. 10.5194/bg-18-229-2021

By:

Leung, Shirley W.;
Weber, Thomas;
Cram, Jacob A.;
Deutsch, Curtis

Publication type:

Article

Explore mediated co-varying dynamics in microbial community using integrated local similarity and liquid association analysis.

Published in:

BMC Genomics, 2019, v. 20, n. 2, p. N.PAG, doi. 10.1186/s12864-019-5469-8

By:

Ai, Dongmei;
Li, Xiaoxin;
Pan, Hongfei;
Chen, Jiamin;
Cram, Jacob A.;
Xia, Li C.

Publication type:

Article

Photosynthate Unloading from Seed Coats of Phaseolus vulgaris L.—Nature and Cellular Location of Turgor-Sensitive Unloading.

Published in:

Journal of Experimental Botany, 1986, v. 37, n. 7, p. 1006

By:

PATRICK, J. W.;
JACOBS, E.;
OFFLER, C. E.;
CRAM, W. J.

Publication type:

Article