Works matching AU Rost, Burkhard

Results: 189

Coordinating the impact of structural genomics on the human ?-helical transmembrane proteome.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 2, p. 135, doi. 10.1038/nsmb.2508

By:

Pieper, Ursula;
Schlessinger, Avner;
Kloppmann, Edda;
Chang, Geoffrey A;
Chou, James J;
Dumont, Mark E;
Fox, Brian G;
Fromme, Petra;
Hendrickson, Wayne A;
Malkowski, Michael G;
Rees, Douglas C;
Stokes, David L;
Stowell, Michael H B;
Wiener, Michael C;
Rost, Burkhard;
Stroud, Robert M;
Stevens, Raymond C;
Sali, Andrej

Publication type:

Article

nala: text mining natural language mutation mentions.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1852, doi. 10.1093/bioinformatics/btx083

By:

Cejuela, Juan Miguel;
Bojchevski, Aleksandar;
Uhlig, Carsten;
Bekmukhametov, Rustem;
Karn, Sanjeev Kumar;
Mahmuti, Shpend;
Baghudana, Ashish;
Dubey, Ankit;
Satagopam, Venkata P.;
Rost, Burkhard

Publication type:

Article

MSAViewer: interactive JavaScript visualization of multiple sequence alignments.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3501, doi. 10.1093/bioinformatics/btw474

By:

Yachdav, Guy;
Wilzbach, Sebastian;
Rauscher, Benedikt;
Sheridan, Robert;
Sillitoe, Ian;
Procter, James;
Lewis, Suzanna E.;
Rost, Burkhard;
Goldberg, Tatyana

Publication type:

Article

Evolutionary profiles improve protein--protein interaction prediction from sequence.

Published in:

Bioinformatics, 2015, v. 31, n. 12, p. 1945, doi. 10.1093/bioinformatics/btv077

By:

Hamp, Tobias;
Rost, Burkhard

Publication type:

Article

More challenges for machine-learning protein interactions.

Published in:

Bioinformatics, 2015, v. 31, n. 10, p. 1521, doi. 10.1093/bioinformatics/btu857

By:

Hamp, Tobias;
Rost, Burkhard

Publication type:

Article

Message from the ISCB: ISCB Ebola award for important future research on the computational biology of Ebola virus.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 616, doi. 10.1093/bioinformatics/btv019

By:

Karp, Peter D.;
Berger, Bonnie;
Kovats, Diane;
Lengauer, Thomas;
Linial, Michal;
Sabeti, Pardis;
Hide, Winston;
Rost, Burkhard

Publication type:

Article

ISCB: past–present perspective for the International Society for Computational Biology.

Published in:

Bioinformatics, 2014, v. 30, n. 1, p. 143, doi. 10.1093/bioinformatics/btt669

By:

Rost, Burkhard

Publication type:

Article

ISCB: past–present perspective for the International Society for Computational Biology.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3243, doi. 10.1093/bioinformatics/btt629

By:

Rost, Burkhard

Publication type:

Article

Paving the future: finding suitable ISMB venues.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2556, doi. 10.1093/bioinformatics/bts420

By:

Rost, Burkhard;
Gaasterland, Terry;
Lengauer, Thomas;
Linial, Michal;
Markel, Scott;
Morrison McKay, B.J.;
Schneider, Reinhard;
Horton, Paul;
Kelso, Janet

Publication type:

Article

LocTree2 predicts localization for all domains of life.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i458, doi. 10.1093/bioinformatics/bts390

By:

Goldberg, Tatyana;
Hamp, Tobias;
Rost, Burkhard

Publication type:

Article

SNPdbe: constructing an nsSNP functional impacts database.

Published in:

Bioinformatics, 2012, v. 28, n. 4, p. 601, doi. 10.1093/bioinformatics/btr705

By:

Schaefer, Christian;
Meier, Alice;
Rost, Burkhard;
Bromberg, Yana

Publication type:

Article

A machine learning approach to predicting protein–ligand binding affinity with applications to molecular docking.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1169, doi. 10.1093/bioinformatics/btq112

By:

Ballester, Pedro J.;
Mitchell, John B. O.;
Rost, Burkhard

Publication type:

Article

Mutual information is critically dependent on prior assumptions: would the correct estimate of mutual information please identify itself?

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1135, doi. 10.1093/bioinformatics/btq111

By:

Fernandes, Andrew D.;
Gloor, Gregory B.;
Rost, Burkhard

Publication type:

Article

ArchSchema: a tool for interactive graphing of related Pfam domain architectures.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1260, doi. 10.1093/bioinformatics/btq119

By:

Tamuri, Asif U.;
Laskowski, Roman A.;
Rost, Burkhard

Publication type:

Article

Protein secondary structure appears to be robust under in silico evolution while protein disorder appears not to be.

Published in:

Bioinformatics, 2010, v. 26, n. 5, p. 625, doi. 10.1093/bioinformatics/btq012

By:

Schaefer, Christian;
Schlessinger, Avner;
Rost, Burkhard

Publication type:

Article

Physical protein-protein interactions predicted from microarrays.

Published in:

Bioinformatics, 2008, v. 24, n. 22, p. 2608, doi. 10.1093/bioinformatics/btn498

By:

Ta-tsen Soong;
Kazimierz O. Wrzeszczynski;
Burkhard Rost

Publication type:

Article

SNAP predicts effect of mutations on protein function.

Published in:

Bioinformatics, 2008, v. 24, n. 20, p. 2397, doi. 10.1093/bioinformatics/btn435

By:

Yana Bromberg;
Guy Yachdav;
Burkhard Rost

Publication type:

Article

Powerful fusion: PSI-BLAST and consensus sequences.

Published in:

Bioinformatics, 2008, v. 24, n. 18, p. 1987, doi. 10.1093/bioinformatics/btn384

By:

Dariusz Przybylski;
Burkhard Rost

Publication type:

Article

MetalDetector: a web server for predicting metal-binding sites and disulfide bridges in proteins from sequence.

Published in:

Bioinformatics, 2008, v. 24, n. 18, p. 2094, doi. 10.1093/bioinformatics/btn371

By:

Marco Lippi;
Andrea Passerini;
Marco Punta;
Burkhard Rost;
Paolo Frasconi

Publication type:

Article

Comprehensive in silico mutagenesis highlights functionally important residues in proteins.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i207, doi. 10.1093/bioinformatics/btn268

By:

Yana Bromberg;
Burkhard Rost

Publication type:

Article

Natively unstructured regions in proteins identified from contact predictions.

Published in:

Bioinformatics, 2007, v. 23, n. 18, p. 2376, doi. 10.1093/bioinformatics/btm349

By:

Avner Schlessinger;
Marco Punta;
Burkhard Rost

Publication type:

Article

Prediction of DNA-binding residues from sequence.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i347, doi. 10.1093/bioinformatics/btm174

By:

Yanay Ofran;
Venkatesh Mysore;
Burkhard Rost

Publication type:

Article

ISIS: interaction sites identified from sequence.

Published in:

Bioinformatics, 2007, v. 23, n. 2, p. e13, doi. 10.1093/bioinformatics/btl303

By:

Yanay Ofran;
Burkhard Rost

Publication type:

Article

PROFbval: predict flexible and rigid residues in proteins.

Published in:

Bioinformatics, 2006, v. 22, n. 7, p. 891, doi. 10.1093/bioinformatics/btl032

By:

Avner Schlessinger;
Guy Yachdav;
Burkhard Rost

Publication type:

Article

ProfPPIdb: Pairs of physical protein-protein interactions predicted for entire proteomes.

Published in:

PLoS ONE, 2018, v. 13, n. 7, p. 1, doi. 10.1371/journal.pone.0199988

By:

Tran, Linh;
Hamp, Tobias;
Rost, Burkhard

Publication type:

Article

Predict impact of single amino acid change upon protein structure.

Published in:

BMC Genomics, 2012, v. 13, n. Suppl 4, p. 1, doi. 10.1186/1471-2164-13-S4-S4

By:

Schaefer, Christian;
Rost, Burkhard

Publication type:

Article

Disease-related mutations predicted to impact protein function.

Published in:

BMC Genomics, 2012, v. 13, n. Suppl 4, p. 1, doi. 10.1186/1471-2164-13-S4-S11

By:

Schaefer, Christian;
Bromberg, Yana;
Achten, Dominik;
Rost, Burkhard

Publication type:

Article

InCoB celebrates its tenth anniversary as first joint conference with ISCB-Asia.

Published in:

BMC Genomics, 2011, v. 12, n. Suppl 3, p. 1, doi. 10.1186/1471-2164-12-S3-S1

By:

Schönbach, Christian;
Tin Wee Tan;
Kelso, Janet;
Rost, Burkhard;
Nathan, Sheila;
Ranganathan, Shoba

Publication type:

Article

Rendering protein mutation movies with MutAmore.

Published in:

BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05610-8

By:

Weissenow, Konstantin;
Rost, Burkhard

Publication type:

Article

PROFcon: novel prediction of long-range contacts.

Published in:

Bioinformatics, 2005, v. 21, n. 13, p. 2960, doi. 10.1093/bioinformatics/bti454

By:

Marco Punta;
Burkhard Rost

Publication type:

Article

ISMB 2005.

Published in:

Bioinformatics, 2005, v. 21, p. i1, doi. 10.1093/bioinformatics/bti1057

By:

Jagadish, H. V.;
States, David;
Rost, Burkhard

Publication type:

Article

ISMB 2005.

Published in:

Bioinformatics, 2005, v. 21, n. 1, p. i1, doi. 10.1093/bioinformatics/bti1057

By:

H. V. Jagadish;
David States;
Burkhard Rost

Publication type:

Article

Protein names precisely peeled off free text.

Published in:

Bioinformatics, 2004, v. 20, n. suppl_1, p. i241, doi. 10.1093/bioinformatics/bth904

By:

Mika, Sven;
Rost, Burkhard

Publication type:

Article

Protein names precisely peeled off free text.

Published in:

Bioinformatics, 2004, v. 20, p. i241, doi. 10.1093/bioinformatics/bth904

By:

Mika, Sven;
Rost, Burkhard

Publication type:

Article

Inferring sub-cellular localization through automated lexical analysis.

Published in:

Bioinformatics, 2002, v. 18, p. S78, doi. 10.1093/bioinformatics/18.suppl_1.S78

By:

Nair, Rajesh;
Rost, Burkhard

Publication type:

Article

Editorial.

Published in:

Bioinformatics, 2002, v. 18, p. S1

By:

Glasgow, Janice;
Rost, Burkhard

Publication type:

Article

Target space for structural genomics revisited.

Published in:

Bioinformatics, 2002, v. 18, n. 7, p. 922, doi. 10.1093/bioinformatics/18.7.922

By:

Liu, Jinfeng;
Rost, Burkhard

Publication type:

Article

Bioinformatics in structural genomics.

Published in:

Bioinformatics, 2002, v. 18, n. 7, p. 897, doi. 10.1093/bioinformatics/18.7.897

By:

Rost, Burkhard;
Honig, Barry;
Valencia, Alfonso

Publication type:

Article

EVA: continuous automatic evaluation of protein structure prediction servers.

Published in:

Bioinformatics, 2001, v. 17, n. 12, p. 1242, doi. 10.1093/bioinformatics/17.12.1242

By:

Eyrich, Volker A.;
Martı´-Renom, Marc A.;
Przybylski, Dariusz;
Madhusudhan, Mallur S.;
Fiser, Andra´s;
Pazos, Florencio;
Valencia, Alfonso;
Sali, Andrej;
Rost, Burkhard

Publication type:

Article

A platform for integrating threading results with protein family analyses.

Published in:

Bioinformatics, 1999, v. 15, n. 12, p. 1062, doi. 10.1093/bioinformatics/15.12.1062

By:

Pazos, Florencio;
Rost, Burkhard;
Valencia, Alfonso

Publication type:

Article

Cloud Prediction of Protein Structure and Function with PredictProtein for Debian.

Published in:

2013

By:

Kaján, László;
Yachdav, Guy;
Vicedo, Esmeralda;
Steinegger, Martin;
Mirdita, Milot;
Angermüller, Christof;
Böhm, Ariane;
Domke, Simon;
Ertl, Julia;
Mertes, Christian;
Reisinger, Eva;
Staniewski, Cedric;
Rost, Burkhard

Publication type:

Journal Article

Cloud Prediction of Protein Structure and Function with PredictProtein for Debian.

Published in:

BioMed Research International, 2013, v. 2013, p. 1, doi. 10.1155/2013/398968

By:

Kaján, László;
Yachdav, Guy;
Vicedo, Esmeralda;
Steinegger, Martin;
Mirdita, Milot;
Angermüller, Christof;
Böhm, Ariane;
Domke, Simon;
Ertl, Julia;
Mertes, Christian;
Reisinger, Eva;
Staniewski, Cedric;
Rost, Burkhard

Publication type:

Article

Protein embeddings and deep learning predict binding residues for various ligand classes.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-03431-4

By:

Littmann, Maria;
Heinzinger, Michael;
Dallago, Christian;
Weissenow, Konstantin;
Rost, Burkhard

Publication type:

Article

Environmental Pressure May Change the Composition Protein Disorder in Prokaryotes.

Published in:

PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0133990

By:

Vicedo, Esmeralda;
Schlessinger, Avner;
Rost, Burkhard

Publication type:

Article

Accelerating the Original Profile Kernel.

Published in:

PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0068459

By:

Hamp, Tobias;
Goldberg, Tatyana;
Rost, Burkhard

Publication type:

Article

NMR Structure of Lipoprotein YxeF from Bacillus subtilis Reveals a Calycin Fold and Distant Homology with the Lipocalin Blc from Escherichia coli.

Published in:

PLoS ONE, 2012, v. 7, n. 6, p. e37404, doi. 10.1371/journal.pone.0037404

By:

Yibing Wu;
Punta, Marco;
Rong Xiao;
Acton, Thomas B.;
Sathyamoorthy, Bharathwaj;
Dey, Fabian;
Fischer, Markus;
Skerra, Arne;
Rost, Burkhard;
Montelione, Gaetano T.;
Szyperski, Thomas

Publication type:

Article

Improved Disorder Prediction by Combination of Orthogonal Approaches.

Published in:

PLoS ONE, 2009, v. 4, n. 2, p. 1, doi. 10.1371/journal.pone.0004433

By:

Schlessinger, Avner;
Punta, Marco;
Yachdav, Guy;
Kajan, Laszlo;
Rost, Burkhard

Publication type:

Article

In silico mutagenesis: a case study of the melanocortin 4 receptor.

Published in:

2009

By:

Bromberg, Yana;
Overton, John;
Vaisse, Christian;
Leibel, Rudolph L.;
Rost, Burkhard

Publication type:

Case Study

Letter to the Editor: 1H, 13C and 15N assignments for the Archaeglobus fulgidis protein AF2095.

Published in:

Journal of Biomolecular NMR, 2004, v. 30, n. 1, p. 107, doi. 10.1023/B:JNMR.0000042947.19593.80

By:

Powers, Robert;
Acton, Thomas B.;
Yiwen Chiang;
Rajan, P.K.;
Cort, John R.;
Kennedy, Michael A.;
Jinfeng Liu;
LiChung Ma;
Rost, Burkhard;
Montelione, Gaetano T.

Publication type:

Article

The importance of planning CT-based imaging features for machine learning-based prediction of pain response.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-43768-6

By:

Llorián-Salvador, Óscar;
Akhgar, Joachim;
Pigorsch, Steffi;
Borm, Kai;
Münch, Stefan;
Bernhardt, Denise;
Rost, Burkhard;
Andrade-Navarro, Miguel A.;
Combs, Stephanie E.;
Peeken, Jan C.

Publication type:

Article