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Metabolic adjustments of blood-stage Plasmodium falciparum in response to sublethal pyrazoleamide exposure.
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- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-04985-7
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- Article
PathNet: a tool for pathway analysis using topological information.
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- Source Code for Biology & Medicine, 2012, v. 7, n. 1, p. 1, doi. 10.1186/1751-0473-7-10
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- Article
Bridging the gap between gene expression and metabolic phenotype via kinetic models.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-63
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- Article
Development and analysis of an in vivocompatible metabolic network of Mycobacterium tuberculosis.
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- BMC Systems Biology, 2010, v. 4, p. 160, doi. 10.1186/1752-0509-4-160
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- Article
Evidence of probabilistic behaviour in protein interaction networks.
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- BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-11
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- Article
Assessing Kidney Injury Induced by Mercuric Chloride in Guinea Pigs with In Vivo and In Vitro Experiments.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 8, p. 7434, doi. 10.3390/ijms24087434
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- Article
Toxicant-Induced Metabolic Alterations in Lipid and Amino Acid Pathways Are Predictive of Acute Liver Toxicity in Rats.
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- International Journal of Molecular Sciences, 2020, v. 21, n. 21, p. 8250, doi. 10.3390/ijms21218250
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Concordance between Thioacetamide-Induced Liver Injury in Rat and Human In Vitro Gene Expression Data.
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- International Journal of Molecular Sciences, 2020, v. 21, n. 11, p. 4017, doi. 10.3390/ijms21114017
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- Article
DBSecSys 2.0: a database of Burkholderia mallei and Burkholderia pseudomallei secretion systems.
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- BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1242-z
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- Article
Computer Simulations of Type I Gas Hydrates in the Presence of Methanol.
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- Annals of the New York Academy of Sciences, 1994, v. 715, n. 1, p. 540, doi. 10.1111/j.1749-6632.1994.tb38880.x
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- Article
Rapid screening of chemicals for their potential to cause specific toxidromes.
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- Frontiers in Drug Discovery, 2024, p. 1, doi. 10.3389/fddsv.2024.1324564
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- Article
Phenotypic Characterization of a Novel Virulence-Factor Deletion Strain of Burkholderia mallei That Provides Partial Protection against Inhalational Glanders in Mice.
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- Frontiers in Cellular & Infection Microbiology, 2016, v. 6, p. 1, doi. 10.3389/fcimb.2016.00021
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- Article
FIEFDom: a transparent domain boundary recognition system using a fuzzy mean operator.
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- Nucleic Acids Research, 2009, v. 37, n. 2, p. 452
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- Article
Inter-study and time-dependent variability of metabolite abundance in cultured red blood cells.
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- Malaria Journal, 2021, v. 20, n. 1, p. 1, doi. 10.1186/s12936-021-03780-5
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- Article
TOXPANEL : A Gene-Set Analysis Tool to Assess Liver and Kidney Injuries.
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- Frontiers in Pharmacology, 2021, v. 11, p. N.PAG, doi. 10.3389/fphar.2021.601511
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- Article
Dengue virus antibody database: Systematically linking serotype-specificity with epitope mapping in dengue virus.
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- PLoS Neglected Tropical Diseases, 2017, v. 11, n. 2, p. 1, doi. 10.1371/journal.pntd.0005395
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- Article
Prediction of Metabolic Flux Distribution from Gene Expression Data Based on the Flux Minimization Principle.
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- PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0112524
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- Article
Systems Level Analysis and Identification of Pathways and Networks Associated with Liver Fibrosis.
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- PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0112193
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- Article
Characterization of Chemically Induced Liver Injuries Using Gene Co-Expression Modules.
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- PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0107230
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Identifying Cytochrome P450 Functional Networks and Their Allosteric Regulatory Elements.
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- PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0081980
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Computational and Experimental Validation of B and T-Cell Epitopes of the <i>In Vivo</i> Immune Response to a Novel Malarial Antigen.
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- PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0071610
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- Article
Rapid Countermeasure Discovery against <i>Francisella tularensis</i> Based on a Metabolic Network Reconstruction
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- PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0063369
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Bioinformatic Analysis of Patient-Derived ASPS Gene Expressions and ASPL-TFE3 Fusion Transcript Levels Identify Potential Therapeutic Targets.
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- PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0048023
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PSPP: A Protein Structure Prediction Pipeline for Computing Clusters.
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- PLoS ONE, 2009, v. 4, n. 7, p. 1, doi. 10.1371/journal.pone.0006254
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Influence of Protein Abundance on High-Throughput Protein-Protein Interaction Detection.
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- PLoS ONE, 2009, v. 4, n. 6, p. 1, doi. 10.1371/journal.pone.0005815
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- Article
A systems biology strategy to identify molecular mechanisms of action and protein indicators of traumatic brain injury.
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- Journal of Neuroscience Research, 2015, v. 93, n. 2, p. 199, doi. 10.1002/jnr.23503
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- Article
In silico analyses of substrate interactions with human serum paraoxonase 1.
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- Proteins, 2009, v. 75, n. 2, p. 486, doi. 10.1002/prot.22264
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- Article
Linking tumor cell cytotoxicity to mechanism of drug action: An integrated analysis of gene expression, small-molecule screening and structural databases.
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- Proteins, 2005, v. 59, n. 3, p. 403, doi. 10.1002/prot.20392
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Distinguishing native conformations of proteins from decoys with an effective free energy estimator based on the OPLS all-atom force field and the surface generalized born solvent model.
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- Proteins, 2002, v. 48, n. 2, p. 404, doi. 10.1002/prot.10171
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Structural investigation of C4b-binding protein by molecular modeling: Localization of putative binding sites.
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- Proteins, 1998, v. 31, n. 4, p. 391, doi. 10.1002/(SICI)1097-0134(19980601)31:4<391::AID-PROT6>3.0.CO;2-L
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- Article
Mining kidney toxicogenomic data by using gene co-expression modules.
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3143-y
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- Article
Using host-pathogen protein interactions to identify and characterize Francisella tularensis virulence factors.
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- BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2351-1
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- Article
Data-driven identification of structural alerts for mitigating the risk of drug-induced human liver injuries.
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- Journal of Cheminformatics, 2015, v. 7, n. 1, p. 1, doi. 10.1186/s13321-015-0053-y
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- Article
Metabolic host responses to malarial infection during the intraerythrocytic developmental cycle.
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- BMC Systems Biology, 2016, v. 10, p. 1, doi. 10.1186/s12918-016-0291-2
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- Article
DBSecSys: a database of Burkholderia mallei secretion systems.
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- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-244
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- Article
Exploiting large-scale drug-protein interaction information for computational drug repurposing.
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- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-210
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Reconstituting protein interaction networks using parameter-dependent domain-domain interactions.
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- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-154
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- Article
Inferring high-confidence human protein-protein interactions.
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- BMC Bioinformatics, 2012, v. 13, n. 1, p. 79, doi. 10.1186/1471-2105-13-79
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- Article
DOVIS: an implementation for high-throughput virtual screening using AutoDock.
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- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-126
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- Article
Assessing Chemical-Induced Liver Injury In Vivo From In Vitro Gene Expression Data in the Rat: The Case of Thioacetamide Toxicity.
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- Frontiers in Genetics, 2019, v. 10, p. 1, doi. 10.3389/fgene.2019.01233
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- Article
Mining Public Toxicogenomic Data Reveals Insights and Challenges in Delineating Liver Steatosis Adverse Outcome Pathways.
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- Frontiers in Genetics, 2019, p. 1, doi. 10.3389/fgene.2019.01007
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- Article
Simplified amino acid alphabets for protein fold recognition and implications for folding.
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- Protein Engineering, 2000, v. 13, n. 3, p. 149, doi. 10.1093/protein/13.3.149
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- Article
Biofilm Formation Mechanisms of Pseudomonas aeruginosa Predicted via Genome-Scale Kinetic Models of Bacterial Metabolism.
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- PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004452
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- Article
Mining Host-Pathogen Protein Interactions to Characterize Burkholderia mallei Infectivity Mechanisms.
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- PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004088
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- Article
Modeling Phenotypic Metabolic Adaptations of Mycobacterium tuberculosis H37Rv under Hypoxia.
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- PLoS Computational Biology, 2012, v. 8, n. 9, p. 1, doi. 10.1371/journal.pcbi.1002688
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- Article
Quantitative Predictions of Binding Free Energy Changes in Drug-Resistant Influenza Neuraminidase.
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- PLoS Computational Biology, 2012, v. 8, n. 8, p. 1, doi. 10.1371/journal.pcbi.1002665
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- Article
A Novel Scoring Approach for Protein Co-Purification Data Reveals High Interaction Specificity.
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- PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000515
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- Article
Probing the Extent of Randomness in Protein Interaction Networks.
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- PLoS Computational Biology, 2008, v. 4, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000114
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- Article
Stochastic Model of the Adaptive Immune Response Predicts Disease Severity and Captures Enhanced Cross-Reactivity in Natural Dengue Infections.
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- Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.696755
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- Article
Immunoprofiling Correlates of Protection Against SHIV Infection in Adjuvanted HIV-1 Pox-Protein Vaccinated Rhesus Macaques.
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- Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2021.625030
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- Article