Works matching IS 13674803 AND DT 2024 AND VI 40 AND IP 9
Results: 42
Accurate and efficient protein embedding using multi-teacher distillation learning.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae567
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Dynamic category-sensitive hypergraph inferring and homo-heterogeneous neighbor feature learning for drug-related microbe prediction.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae562
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RetroCaptioner: beyond attention in end-to-end retrosynthesis transformer via contrastively captioned learnable graph representation.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae561
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Biomedical knowledge graph-optimized prompt generation for large language models.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae560
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MEHunter: transformer-based mobile element variant detection from long reads.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae557
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AutoPeptideML: a study on how to build more trustworthy peptide bioactivity predictors.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae555
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mgikit: demultiplexing toolkit for MGI fastq files.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae554
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BenchStab: a tool for automated querying of web-based stability predictors.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae553
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STRING-ing together protein complexes: corpus and methods for extracting physical protein interactions from the biomedical literature.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae552
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Scywalker: scalable end-to-end data analysis workflow for long-read single-cell transcriptome sequencing.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae549
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Feature selection by replicate reproducibility and non-redundancy.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae548
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NeoaPred: a deep-learning framework for predicting immunogenic neoantigen based on surface and structural features of peptide–human leukocyte antigen complexes.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae547
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Bin2cell reconstructs cells from high resolution Visium HD data.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae546
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SCMeTA: a pipeline for single-cell metabolic analysis data processing.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae545
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bio2Byte Tools deployment as a Python package and Galaxy tool to predict protein biophysical properties.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae543
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SAAMBE-MEM: a sequence-based method for predicting binding free energy change upon mutation in membrane protein–protein complexes.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae544
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CELEBRIMBOR: core and accessory genes from metagenomes.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae542
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Guide assignment in single-cell CRISPR screens using crispat.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae535
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Uncertainty quantification in high-dimensional linear models incorporating graphical structures with applications to gene set analysis.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae541
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CSV-Filter: a deep learning-based comprehensive structural variant filtering method for both short and long reads.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae539
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KnotResolver: tracking self-intersecting filaments in microscopy using directed graphs.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae538
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SCIntRuler: guiding the integration of multiple single-cell RNA-seq datasets with a novel statistical metric.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae537
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Signature Search Polestar: a comprehensive drug repurposing method evaluation assistant for customized oncogenic signature.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae536
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A distribution-free and analytic method for power and sample size calculation in single-cell differential expression.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae540
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ChatMol: interactive molecular discovery with natural language.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae534
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DTI-LM: language model powered drug–target interaction prediction.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae533
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SWAMPy: simulating SARS-CoV-2 wastewater amplicon metagenomes.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae532
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Higher-order correction of persistent batch effects in correlation networks.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae531
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RCPedia: a global resource for studying and exploring retrocopies in diverse species.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae530
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Are genomic language models all you need? Exploring genomic language models on protein downstream tasks.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae529
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Deep5hmC: predicting genome-wide 5-hydroxymethylcytosine landscape via a multimodal deep learning model.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae528
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Eliater: a Python package for estimating outcomes of perturbations in biomolecular networks.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae527
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Pandagma: a tool for identifying pan-gene sets and gene families at desired evolutionary depths and accommodating whole-genome duplications.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae526
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FateNet: an integration of dynamical systems and deep learning for cell fate prediction.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae525
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GTAM: a molecular pretraining model with geometric triangle awareness.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae524
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- Article
SpatialOne: end-to-end analysis of visium data at scale.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae509
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Multi-Omic Graph Diagnosis (MOGDx): a data integration tool to perform classification tasks for heterogeneous diseases.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae523
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sparsesurv: a Python package for fitting sparse survival models via knowledge distillation.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae521
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Triangulating evidence in health sciences with Annotated Semantic Queries.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae519
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scDiffusion: conditional generation of high-quality single-cell data using diffusion model.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae518
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Identifying cancer cells from calling single-nucleotide variants in scRNA-seq data.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae512
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MetDecode: methylation-based deconvolution of cell-free DNA for noninvasive multi-cancer typing.
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- Bioinformatics, 2024, v. 40, n. 9, p. 1, doi. 10.1093/bioinformatics/btae522
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