Works matching IS 13674803 AND DT 2024 AND VI 40 AND IP 6
Results: 50
DDN3.0: determining significant rewiring of biological network structure with differential dependency networks.
- Published in:
- 2024
- By:
- Publication type:
- Case Study
Genopyc: a Python library for investigating the functional effects of genomic variants associated to complex diseases.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae379
- By:
- Publication type:
- Article
snpAIMeR: R package for evaluating ancestry informative marker contributions in non-model population diagnostics.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae377
- By:
- Publication type:
- Article
Correction to: For antibody sequence generative modeling, mixture models may be all you need.
- Published in:
- 2024
- Publication type:
- Correction Notice
RNA m6A detection using raw current signals and basecalling errors from Nanopore direct RNA sequencing reads.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae375
- By:
- Publication type:
- Article
MetaboReport: from metabolomics data analysis to comprehensive reporting.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae373
- By:
- Publication type:
- Article
Interpretable deep learning in single-cell omics.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae374
- By:
- Publication type:
- Article
MCDHGN: heterogeneous network-based cancer driver gene prediction and interpretability analysis.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae362
- By:
- Publication type:
- Article
Scaling DEPP phylogenetic placement to ultra-large reference trees: a tree-aware ensemble approach.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae361
- By:
- Publication type:
- Article
GenoFig: a user-friendly application for the visualization and comparison of genomic regions.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae372
- By:
- Publication type:
- Article
Subtype-MGTP: a cancer subtype identification framework based on multi-omics translation.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae360
- By:
- Publication type:
- Article
GammaGateR: semi-automated marker gating for single-cell multiplexed imaging.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae356
- By:
- Publication type:
- Article
HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae364
- By:
- Publication type:
- Article
scCross: efficient search for rare subpopulations across multiple single-cell samples.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae371
- By:
- Publication type:
- Article
RCSB protein Data Bank: exploring protein 3D similarities via comprehensive structural alignments.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae370
- By:
- Publication type:
- Article
RiboGraph: an interactive visualization system for ribosome profiling data at read length resolution.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae369
- By:
- Publication type:
- Article
Supervised learning of enhancer–promoter specificity based on genome-wide perturbation studies highlights areas for improvement in learning.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae367
- By:
- Publication type:
- Article
Ragas: integration and enhanced visualization for single cell subcluster analysis.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae366
- By:
- Publication type:
- Article
OLB-AC: toward optimizing ligand bioactivities through deep graph learning and activity cliffs.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae365
- By:
- Publication type:
- Article
biotextgraph: graphical summarization of functional similarities from textual information.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae357
- By:
- Publication type:
- Article
FMCA-DTI: a fragment-oriented method based on a multihead cross attention mechanism to improve drug–target interaction prediction.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae347
- By:
- Publication type:
- Article
Figeno: multi-region genomic figures with long-read support.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae354
- By:
- Publication type:
- Article
Mariner: explore the Hi-Cs.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae352
- By:
- Publication type:
- Article
bnglViz: online visualization of rule-based models.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae351
- By:
- Publication type:
- Article
Bigtools: a high-performance BigWig and BigBed library in Rust.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae350
- By:
- Publication type:
- Article
Drug–target interaction predictions with multi-view similarity network fusion strategy and deep interactive attention mechanism.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae346
- By:
- Publication type:
- Article
KRAGEN: a knowledge graph-enhanced RAG framework for biomedical problem solving using large language models.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae353
- By:
- Publication type:
- Article
SuPreMo: a computational tool for streamlining in silico perturbation using sequence-based predictive models.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae340
- By:
- Publication type:
- Article
SNP-slice resolves mixed infections: simultaneously unveiling strain haplotypes and linking them to hosts.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae344
- By:
- Publication type:
- Article
HE2Gene: image-to-RNA translation via multi-task learning for spatial transcriptomics data.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae343
- By:
- Publication type:
- Article
Improving the performance and interpretability on medical datasets using graphical ensemble feature selection.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae341
- By:
- Publication type:
- Article
CLEAPA: a framework for exploring the conformational landscape of cryo-EM using energy-aware pathfinding algorithm.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae345
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- Publication type:
- Article
Impeller: a path-based heterogeneous graph learning method for spatial transcriptomic data imputation.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae339
- By:
- Publication type:
- Article
ReactomeGSA: new features to simplify public data reuse.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae338
- By:
- Publication type:
- Article
Computing linkage disequilibrium aware genome embeddings using autoencoders.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae326
- By:
- Publication type:
- Article
SWGTS—a platform for stream-based host DNA depletion.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae332
- By:
- Publication type:
- Article
Readon: a novel algorithm to identify read-through transcripts with long-read sequencing data.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae336
- By:
- Publication type:
- Article
tstrait: a quantitative trait simulator for ancestral recombination graphs.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae334
- By:
- Publication type:
- Article
spillR: spillover compensation in mass cytometry data.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae337
- By:
- Publication type:
- Article
Flexible parsing, interpretation, and editing of technical sequences with splitcode.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae331
- By:
- Publication type:
- Article
gMCSpy: efficient and accurate computation of genetic minimal cut sets in Python.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae318
- By:
- Publication type:
- Article
MSModDetector: a tool for detecting mass shifts and post-translational modifications in individual ion mass spectrometry data.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae335
- By:
- Publication type:
- Article
MoLPC2: improved prediction of large protein complex structures and stoichiometry using Monte Carlo Tree Search and AlphaFold2.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae329
- By:
- Publication type:
- Article
AmplificationTimeR: an R package for timing sequential amplification events.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae281
- By:
- Publication type:
- Article
TARO: tree-aggregated factor regression for microbiome data integration.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae321
- By:
- Publication type:
- Article
MolDy: molecular dynamics simulation made easy.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae313
- By:
- Publication type:
- Article
SAFPred: synteny-aware gene function prediction for bacteria using protein embeddings.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae328
- By:
- Publication type:
- Article
Incorporating temporal dynamics of mutations to enhance the prediction capability of antiretroviral therapy's outcome for HIV-1.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae327
- By:
- Publication type:
- Article
PathwayNexus: a tool for interactive metabolic data analysis.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae310
- By:
- Publication type:
- Article
DEAttentionDTA: protein–ligand binding affinity prediction based on dynamic embedding and self-attention.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae319
- By:
- Publication type:
- Article