Works matching IS 13674803 AND DT 2024 AND VI 40 AND IP 1
Results: 47
Sensommatic: an efficient pipeline to mine and predict sensory receptor genes in the era of reference-quality genomes.
- Published in:
- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btae040
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- Publication type:
- Article
QATS: an ImageJ plugin for the quantification of toroidal nuclei in biological images.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btae026
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- Publication type:
- Article
MetaNorm: incorporating meta-analytic priors into normalization of NanoString nCounter data.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btae024
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- Publication type:
- Article
Assembling spatial clustering framework for heterogeneous spatial transcriptomics data with GRAPHDeep.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btae023
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- Publication type:
- Article
Text mining for contexts and relationships in cancer genomics literature.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btae021
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- Publication type:
- Article
scMAE: a masked autoencoder for single-cell RNA-seq clustering.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btae020
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- Publication type:
- Article
nf-core/nanostring: a pipeline for reproducible NanoString nCounter analysis.
- Published in:
- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btae019
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- Publication type:
- Article
ViralWasm: a client-side user-friendly web application suite for viral genomics.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btae018
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- Publication type:
- Article
Fragmentstein—facilitating data reuse for cell-free DNA fragment analysis.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btae017
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- Publication type:
- Article
ReMASTER: improved phylodynamic simulation for BEAST 2.7.
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- 2024
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- Publication type:
- Letter to the Editor
FMAlign2: a novel fast multiple nucleotide sequence alignment method for ultralong datasets.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btae014
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- Publication type:
- Article
Multiomics-integrated deep language model enables in silico genome-wide detection of transcription factor binding site in unexplored biosamples.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btae013
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- Publication type:
- Article
SeedMatchR: identify off-target effects mediated by siRNA seed regions in RNA-seq experiments.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btae011
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- Publication type:
- Article
SimService: a lightweight library for building simulation services in Python.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btae009
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- Publication type:
- Article
GatekeepR: an R Shiny application for the identification of nodes with high dynamic impact in Boolean networks.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btae007
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- Publication type:
- Article
selscan 2.0: scanning for sweeps in unphased data.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btae006
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- Publication type:
- Article
FLAMS: Find Lysine Acylations and other Modification Sites.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btae005
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- Publication type:
- Article
CircSI-SSL: circRNA-binding site identification based on self-supervised learning.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btae004
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- Publication type:
- Article
Microbial interactions from a new perspective: reinforcement learning reveals new insights into microbiome evolution.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btae003
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- Publication type:
- Article
Guiding discovery of protein sequence-structure-function modeling.
- Published in:
- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btae002
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- Publication type:
- Article
methyLImp2: faster missing value estimation for DNA methylation data.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btae001
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- Publication type:
- Article
Embedding-based alignment: combining protein language models with dynamic programming alignment to detect structural similarities in the twilight-zone.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad786
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- Publication type:
- Article
RPEMHC: improved prediction of MHC–peptide binding affinity by a deep learning approach based on residue–residue pair encoding.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad785
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- Publication type:
- Article
Mosaic-PICASSO: accurate crosstalk removal for multiplex fluorescence imaging.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad784
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- Publication type:
- Article
ESQmodel: biologically informed evaluation of 2-D cell segmentation quality in multiplexed tissue images.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad783
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- Publication type:
- Article
M-Ionic: prediction of metal-ion-binding sites from sequence using residue embeddings.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad782
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- Publication type:
- Article
MHCSeqNet2—improved peptide-class I MHC binding prediction for alleles with low data.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad780
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- Publication type:
- Article
ExEmPLAR (Extracting, Exploring, and Embedding Pathways Leading to Actionable Research): a user-friendly interface for knowledge graph mining.
- Published in:
- 2024
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- Publication type:
- Case Study
TEFDTA: a transformer encoder and fingerprint representation combined prediction method for bonded and non-bonded drug–target affinities.
- Published in:
- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad778
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- Publication type:
- Article
Subset scanning for multi-trait analysis using GWAS summary statistics.
- Published in:
- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad777
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- Publication type:
- Article
Pathway analysis through mutual information.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad776
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- Publication type:
- Article
HAT: de novo variant calling for highly accurate short-read and long-read sequencing data.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad775
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- Publication type:
- Article
GeNNius: an ultrafast drug–target interaction inference method based on graph neural networks.
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- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad774
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- Publication type:
- Article
CellularPotts.jl: simulating multiscale cellular models in Julia.
- Published in:
- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad773
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- Publication type:
- Article
scDMV: a zero–one inflated beta mixture model for DNA methylation variability with scBS-seq data.
- Published in:
- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad772
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- Publication type:
- Article
Mining literature and pathway data to explore the relations of ketamine with neurotransmitters and gut microbiota using a knowledge-graph.
- Published in:
- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad771
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- Publication type:
- Article
A fast machine learning dataloader for epigenetic tracks from BigWig files.
- Published in:
- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad767
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- Publication type:
- Article
SOHPIE: statistical approach via pseudo-value information and estimation for differential network analysis of microbiome data.
- Published in:
- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad766
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- Publication type:
- Article
ELISL: early–late integrated synthetic lethality prediction in cancer.
- Published in:
- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad764
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- Publication type:
- Article
pyCapsid: identifying dominant dynamics and quasi-rigid mechanical units in protein shells.
- Published in:
- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad761
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- Publication type:
- Article
MK-BMC: a Multi-Kernel framework with Boosted distance metrics for Microbiome data for Classification.
- Published in:
- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad757
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- Publication type:
- Article
SciDataFlow: a tool for improving the flow of data through science.
- Published in:
- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad754
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- Publication type:
- Article
Clumppling: cluster matching and permutation program with integer linear programming.
- Published in:
- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad751
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- Publication type:
- Article
Coracle—a machine learning framework to identify bacteria associated with continuous variables.
- Published in:
- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad749
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- Publication type:
- Article
Drug repositioning with adaptive graph convolutional networks.
- Published in:
- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad748
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- Publication type:
- Article
Seq-InSite: sequence supersedes structure for protein interaction site prediction.
- Published in:
- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad738
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- Publication type:
- Article
Artificial intelligence-assisted quantification and assessment of whole slide images for pediatric kidney disease diagnosis.
- Published in:
- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad740
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- Publication type:
- Article