Works matching Chromosome structure

Results: 3778

Chromosome structures: reduction of certain problems with unequal gene content and gene paralogs to integer linear programming.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1944-x

By:

Lyubetsky, Vassily;
Gershgorin, Roman;
Gorbunov, Konstantin

Publication type:

Article

利用改进的3DMax算法重构染色体3D结构.

Published in:

Chinese Journal of Bioinformatics, 2021, v. 19, n. 4, p. 254, doi. 10.12113/202008004

By:

刘立伟;
么会丽

Publication type:

Article

Chromosome inner structure investigation by electron tomography and electron diffraction in a transmission electron microscope.

Published in:

Chromosome Research, 2021, v. 29, n. 1, p. 63, doi. 10.1007/s10577-021-09661-6

By:

Phengchat, Rinyaporn;
Malac, Marek;
Hayashida, Misa

Publication type:

Article

An Overview of Methods for Reconstructing 3-D Chromosome and Genome Structures from Hi-C Data.

Published in:

Biological Procedures Online, 2019, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12575-019-0094-0

By:

Oluwadare, Oluwatosin;
Highsmith, Max;
Cheng, Jianlin

Publication type:

Article

ParticleChromo3D: a Particle Swarm Optimization algorithm for chromosome 3D structure prediction from Hi-C data.

Published in:

BioData Mining, 2022, v. 15, n. 1, p. 1, doi. 10.1186/s13040-022-00305-x

By:

Vadnais, David;
Middleton, Michael;
Oluwadare, Oluwatosin

Publication type:

Article

Irene Manton, Erwin Schrödinger and the Puzzle of Chromosome Structure.

Published in:

Journal of the History of Biology, 2016, v. 49, n. 3, p. 425, doi. 10.1007/s10739-015-9424-5

By:

Williams, Nicola

Publication type:

Article

Inferential Structure Determination of Chromosomes from Single-Cell Hi-C Data.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005292

By:

Carstens, Simeon;
Nilges, Michael;
Habeck, Michael

Publication type:

Article

GSDB: a database of 3D chromosome and genome structures reconstructed from Hi-C data.

Published in:

BMC Molecular & Cell Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12860-020-00304-y

By:

Oluwadare, Oluwatosin;
Highsmith, Max;
Turner, Douglass;
Lieberman-Aiden, Erez;
Cheng, Jianlin

Publication type:

Article

Structure of the human chromosome interaction network.

Published in:

PLoS ONE, 2017, v. 12, n. 11, p. 1, doi. 10.1371/journal.pone.0188201

By:

Sarnataro, Sergio;
Chiariello, Andrea M.;
Esposito, Andrea;
Prisco, Antonella;
Nicodemi, Mario

Publication type:

Article

Spaghetti Connections: Synaptonemal Complexes as a Tool to Explore Chromosome Structure, Evolution, and Meiotic Behavior in Fish.

Published in:

Cytogenetic & Genome Research, 2024, v. 164, n. 1, p. 1, doi. 10.1159/000538238

By:

Lisachov, Artem;
Dedukh, Dmitrij;
Simanovsky, Sergey;
Panthum, Thitipong;
Singchat, Worapong;
Srikulnath, Kornsorn

Publication type:

Article

Correlating the Genetic and Physical Map of Barley Chromosome 3H Revealed Limitations of the FISH-Based Mapping of Nearby Single-Copy Probes Caused by the Dynamic Structure of Metaphase Chromosomes.

Published in:

Cytogenetic & Genome Research, 2017, v. 152, n. 2, p. 90, doi. 10.1159/000478631

By:

Bustamante, Fernanda O.;
aliyeva-Schnorr, Lala;
Fuchs, Jörg;
Beier, Sebastian;
Houben, andreas

Publication type:

Article

Highly Conserved Elements and Chromosome Structure Evolution in Mitochondrial Genomes in Ciliates.

Published in:

Life (2075-1729), 2017, v. 7, n. 1, p. 9, doi. 10.3390/life7010009

By:

Gershgorin, Roman A.;
Gorbunov, Konstantin Yu.;
Zverkov, Oleg A.;
Rubanov, Lev I.;
Seliverstov, Alexandr V.;
Lyubetsky, Vassily A.

Publication type:

Article

A Sir2-regulated locus control region in the recombination enhancer of Saccharomyces cerevisiae specifies chromosome III structure.

Published in:

PLoS Genetics, 2019, v. 15, n. 8, p. 1, doi. 10.1371/journal.pgen.1008339

By:

Li, Mingguang;
Fine, Ryan D.;
Dinda, Manikarna;
Bekiranov, Stefan;
Smith, Jeffrey S.

Publication type:

Article

Unraveling the cohesin-chromatin interface: identifying protein interactions that modulate chromosome structure and function.

Published in:

Epigenetics & Chromatin, 2025, v. 18, n. 1, p. 1, doi. 10.1186/s13072-025-00596-4

By:

Rittenhouse, Natalie L.;
Gohil, Riya;
Arricastres, June E.;
Dowen, Jill M.

Publication type:

Article

Seeing chromosome structure reveals its function.

Published in:

2021

By:

Fukui, Kiichi;
Wako, Toshiyuki

Publication type:

Editorial

Imaging the inner structure of chromosomes: contribution of focused ion beam/scanning electron microscopy to chromosome research.

Published in:

Chromosome Research, 2021, v. 29, n. 1, p. 51, doi. 10.1007/s10577-021-09650-9

By:

Dwiranti, Astari;
Arifudin, Fendi Sofyan;
Wako, Toshiyuki;
Fukui, Kiichi

Publication type:

Article

Maps of Constitutive-Heterochromatin Distribution for Four Martes Species (Mustelidae, Carnivora, Mammalia) Show the Formative Role of Macrosatellite Repeats in Interspecific Variation of Chromosome Structure.

Published in:

Genes, 2023, v. 14, n. 2, p. 489, doi. 10.3390/genes14020489

By:

Beklemisheva, Violetta R.;
Lemskaya, Natalya A.;
Prokopov, Dmitry Yu.;
Perelman, Polina L.;
Romanenko, Svetlana A.;
Proskuryakova, Anastasia A.;
Serdyukova, Natalya A.;
Utkin, Yaroslav A.;
Nie, Wenhui;
Ferguson-Smith, Malcolm A.;
Yang, Fentang;
Graphodatsky, Alexander S.

Publication type:

Article

EVR: reconstruction of bacterial chromosome 3D structure models using error-vector resultant algorithm.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-6096-0

By:

Hua, Kang-Jian;
Ma, Bin-Guang

Publication type:

Article

Chromosome structure modeling tools and their evaluation in bacteria.

Published in:

Briefings in Bioinformatics, 2024, v. 25, n. 2, p. 1, doi. 10.1093/bib/bbae044

By:

Liu, Tong;
Qiu, Qin-Tian;
Hua, Kang-Jian;
Ma, Bin-Guang

Publication type:

Article

Surveillance of cohesin-supported chromosome structure controls meiotic progression.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18219-9

By:

Castellano-Pozo, Maikel;
Pacheco, Sarai;
Sioutas, Georgios;
Jaso-Tamame, Angel Luis;
Dore, Marian H.;
Karimi, Mohammad M.;
Martinez-Perez, Enrique

Publication type:

Article

基于Hi-c 数据的酵母染色体三维结构重构.

Published in:

Chinese Journal of Bioinformatics, 2019, v. 17, n. 3, p. 182, doi. 10.12113/j.issn.1672-5565.201812007

By:

丰继华;
牟锦;
郭亚茹

Publication type:

Article

Striking variation in chromosome structure within Musa acuminata subspecies, diploid cultivars, and F1 diploid hybrids.

Published in:

Frontiers in Plant Science, 2024, p. 1, doi. 10.3389/fpls.2024.1387055

By:

Beránková, Denisa;
Čížková, Jana;
Majzlíková, Gabriela;
Doležalová, Alžběta;
Mduma, Hassan;
Brown, Allan;
Swennen, Rony;
Hřibová, Eva

Publication type:

Article

Assembly and annotation of the Gossypium barbadense L. 'Pima-S6' genome raise questions about the chromosome structure and gene content of Gossypium barbadense genomes.

Published in:

BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-022-09102-6

By:

Chávez Montes, Ricardo A.;
Ulloa, Mauricio;
Biniashvili, Tammy;
Zackay, Arik;
Kfir, Nir;
Lopez-Arredondo, Damar;
Herrera-Estrella, Luis

Publication type:

Article

Characterizing the variation in chromosome structure ensembles in the context of the nuclear microenvironment.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010392

By:

Das, Priyojit;
Shen, Tongye;
McCord, Rachel Patton

Publication type:

Article

EVRC: reconstruction of chromosome 3D structure models using error-vector resultant algorithm with clustering coefficient.

Published in:

Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad638

By:

Wang, Xiao;
Gu, Wei-Cheng;
Li, Jie;
Ma, Bin-Guang

Publication type:

Article

SCL: a lattice-based approach to infer 3D chromosome structures from single-cell Hi-C data.

Published in:

Bioinformatics, 2019, v. 35, n. 20, p. 3981, doi. 10.1093/bioinformatics/btz181

By:

Zhu, Hao;
Wang, Zheng

Publication type:

Article

Variations of wheat (Triticum aestivum L.) chromosomes caused by the 5A chromosomes with complex cytological structure.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 01, doi. 10.3389/fpls.2022.992934

By:

Yang Zou;
Jie Luo;
Zongxiang Tang;
Shulan Fu

Publication type:

Article

Cohesin-interacting protein WAPL-1 regulates meiotic chromosome structure and cohesion by antagonizing specific cohesin complexes.

Published in:

eLife, 2016, p. 1, doi. 10.7554/eLife.10851

By:

Crawley, Oliver;
Barroso, Consuelo;
Testori, Sarah;
Ferrandiz, Nuria;
Silva, Nicola;
Castellano-Pozo, Maikel;
Jaso-Tamame, Angel Luis;
Martinez-Perez, Enrique

Publication type:

Article

Binary or Integer Chromosome: Which Is the Best Structure for Supervised Machine Learning Using Genetic Algorithms?

Published in:

Applied Sciences (2076-3417), 2025, v. 15, n. 5, p. 2608, doi. 10.3390/app15052608

By:

Alves, Alexandre Henrick da Silva;
Neto, Guilherme Antonio Coelho;
Gomes, Matheus de Souza;
Santos, Líbia Diniz;
Bertarini, Pedro Luiz Lima;
do Amaral, Laurence Rodrigues

Publication type:

Article

MaxComp: Predicting single-cell chromatin compartments from 3D chromosome structures.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1013114

By:

Zhan, Yuxiang;
Musella, Francesco;
Alber, Frank

Publication type:

Article

Aneuploidy across individual chromosomes at the embryonic level in trophectoderm biopsies: changes with patient age and chromosome structure.

Published in:

Journal of Assisted Reproduction & Genetics, 2014, v. 31, n. 11, p. 1501, doi. 10.1007/s10815-014-0333-x

By:

Franasiak, Jason;
Forman, Eric;
Hong, Kathleen;
Werner, Marie;
Upham, Kathleen;
Treff, Nathan;
Scott, Richard

Publication type:

Article

Contribution of advanced fluorescence nano microscopy towards revealing mitotic chromosome structure.

Published in:

Chromosome Research, 2021, v. 29, n. 1, p. 19, doi. 10.1007/s10577-021-09654-5

By:

Botchway, S. W.;
Farooq, S.;
Sajid, A.;
Robinson, I. K.;
Yusuf, M.

Publication type:

Article

Imaging approaches for chromosome structures.

Published in:

Chromosome Research, 2021, v. 29, n. 1, p. 5, doi. 10.1007/s10577-021-09648-3

By:

Fukui, Kiichi;
Kato, Seiji

Publication type:

Article

Insight into the Chromosome Structure of the Cultivated Tetraploid Alfalfa (Medicago sativa subsp. sativa L.) by a Combined Use of GISH and FISH Techniques.

Published in:

Plants (2223-7747), 2020, v. 9, n. 4, p. 542, doi. 10.3390/plants9040542

By:

Falistocco, Egizia

Publication type:

Article

New insights into mammalian sex chromosome structure and evolution using high-quality sequences from bovine X and Y chromosomes.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6364-z

By:

Liu, Ruijie;
Low, Wai Yee;
Tearle, Rick;
Koren, Sergey;
Ghurye, Jay;
Rhie, Arang;
Phillippy, Adam M.;
Rosen, Benjamin D.;
Bickhart, Derek M.;
Smith, Timothy P. L.;
Hiendleder, Stefan;
Williams, John L.

Publication type:

Article

Origin, Composition, and Structure of the Supernumerary B Chromosome of Drosophila melanogaster.

Published in:

Genetics, 2018, v. 210, n. 4, p. 1197, doi. 10.1534/genetics.118.301478

By:

Hanlon, Stacey L.;
Eche, Salam;
Hawley, R. Scott;
Miller, Danny E.

Publication type:

Article

HiC1Dmetrics: framework to extract various one-dimensional features from chromosome structure data.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1093/bib/bbab509

By:

Wang, Jiankang;
Nakato, Ryuichiro

Publication type:

Article

Erratum to: inferring the global structure of chromosomes from structural variations.

Published in:: 2015
Publication type:: Correction Notice

Chromosome Painting in Cultivated Bananas and Their Wild Relatives (Musa spp.) Reveals Differences in Chromosome Structure.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 21, p. 7915, doi. 10.3390/ijms21217915

By:

Šimoníková, Denisa;
Němečková, Alžběta;
Čížková, Jana;
Brown, Allan;
Swennen, Rony;
Doležel, Jaroslav;
Hřibová, Eva

Publication type:

Article

Heat stress impairs centromere structure and segregation of meiotic chromosomes in Arabidopsis.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.90253

By:

Khaitova, Lucie Crhak;
Mikulkova, Pavlina;
Pecinkova, Jana;
Kalidass, Manikandan;
Heckmann, Stefan;
Lermontova, Inna;
Riha, Karel

Publication type:

Article

Reconstructing high-resolution chromosome three-dimensional structures by Hi-C complex networks.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 17, p. 39, doi. 10.1186/s12859-018-2464-z

By:

Liu, Tong;
Wang, Zheng

Publication type:

Article

Long-read sequencing reveals the complex structure of extra dic(21;21) chromosome and its biological effects.

Published in:

Human Genetics, 2023, v. 142, n. 9, p. 1375, doi. 10.1007/s00439-023-02583-9

By:

Yoshida-Tanaka, Kugui;
Ikemoto, Ko;
Kuribayashi, Ryoji;
Unoki, Motoko;
Takano, Takako;
Fujimoto, Akihiro

Publication type:

Article

Correction to: Contribution of advanced fluorescence nano microscopy towards revealing mitotic chromosome structure.

Published in:

2021

By:

Botchway, S. W.;
Farooq, S.;
Sajid, A.;
Robinson, I. K.;
Yusuf, M.

Publication type:

Correction Notice

A sampling of methods to study chromosome and genome structure and function.

Published in:

2020

By:

Sullivan, Beth A.

Publication type:

Editorial

The Divergence of Chromosome Structures and 45S Ribosomal DNA Organization in Cucumis debilis Inferred by Comparative Molecular Cytogenetic Mapping.

Published in:

Plants (2223-7747), 2022, v. 11, n. 15, p. 1960, doi. 10.3390/plants11151960

By:

Setiawan, Agus Budi;
Purwantoro, Aziz;
Teo, Chee How;
Nhi, Phan Thi Phuong;
Kato, Kenji;
Kikuchi, Shinji;
Koba, Takato

Publication type:

Article

Near telomere-to-telomere genome assemblies of Silkie Gallus gallus and Mallard Anas platyrhynchos restored the structure of chromosomes and "missing" genes in birds.

Published in:

Journal of Animal Science & Biotechnology, 2025, v. 16, n. 1, p. 1, doi. 10.1186/s40104-024-01141-1

By:

Zhao, Qiangsen;
Yin, Zhongtao;
Hou, Zhuocheng

Publication type:

Article

The Genomic Architecture of a Rapid Island Radiation: Recombination Rate Variation, Chromosome Structure, and Genome Assembly of the Hawaiian Cricket Laupala.

Published in:

Genetics, 2018, v. 209, n. 4, p. 1329, doi. 10.1534/genetics.118.300894

By:

Blankers, Thomas;
Oh, Kevin P.;
Bombarely, Aureliano;
Shaw, Kerry L.

Publication type:

Article

Mapping the semi-nested community structure of 3D chromosome contact networks.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011185

By:

Bernenko, Dolores;
Lee, Sang Hoon;
Stenberg, Per;
Lizana, Ludvig

Publication type:

Article

AI at the Frontier of Cytogenetics: Chromosome Structure Detection.

Published in:

Journal of Computational Analysis & Applications, 2024, v. 33, n. 7, p. 1626

By:

Mounika, G.;
Devika, P.;
Sandeep, B.;
Sadulla, Sk.;
Charan, A.;
Raju, S. Yogeshwar

Publication type:

Article

Investigation of Astyanax mexicanus (Characiformes, Characidae) chromosome 1 structure reveals unmapped sequences and suggests conserved evolution.

Published in:

PLoS ONE, 2024, v. 19, n. 11, p. 1, doi. 10.1371/journal.pone.0313896

By:

Silva, Maelin;
Mazzoni Zerbinato Andrade Silva, Duílio;
Castro, Jonathan Pena;
Makunin, Alex I.;
Barby, Felipe Faix;
de Oliveira, Edivaldo Herculano Correa;
Liehr, Thomas;
Cioffi, Marcelo Bello;
Porto-Foresti, Fábio;
Foresti, Fausto;
Artoni, Roberto Ferreira

Publication type:

Article