Works matching IS 13674803 AND DT 2023 AND VI 39 AND IP 9
Results: 60
BQsupports: systematic assessment of the support and novelty of new biomedical associations.
- Published in:
- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad581
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- Article
Tcbf: a novel user-friendly tool for pan-3D genome analysis of topologically associating domain in eukaryotic organisms.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad576
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- Article
Correction to: Clustering spatial transcriptomics data.
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- 2023
- Publication type:
- Correction Notice
AFsample: improving multimer prediction with AlphaFold using massive sampling.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad573
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P-DOR, an easy-to-use pipeline to reconstruct bacterial outbreaks using genomics.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad571
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- Article
BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad570
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- Article
INTEGRATE-Circ and INTEGRATE-Vis: unbiased detection and visualization of fusion-derived circular RNA.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad569
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- Article
ActivePPI: quantifying protein–protein interaction network activity with Markov random fields.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad567
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- Article
Correction to: Online bias-aware disease module mining with ROBUST-Web.
- Published in:
- 2023
- Publication type:
- Correction Notice
mbQTL: an R/Bioconductor package for microbial quantitative trait loci (QTL) estimation.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad565
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- Article
chem16S: community-level chemical metrics for exploring genomic adaptation to environments.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad564
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- Article
A general framework for powerful confounder adjustment in omics association studies.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad563
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- Article
Correction to: "Retraction of: DeepCRISTL: deep transfer learning to predict CRISPR/Cas9 functional and endogenous on-target editing efficiency".
- Published in:
- 2023
- Publication type:
- Correction Notice
cloneRate: fast estimation of single-cell clonal dynamics using coalescent theory.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad561
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- Article
DataDTA: a multi-feature and dual-interaction aggregation framework for drug–target binding affinity prediction.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad560
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- Article
Correction to: Optimal adjustment sets for causal query estimation in partially observed biomolecular networks.
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- 2023
- Publication type:
- Correction Notice
Correction to: Python interfaces for the Smoldyn simulator.
- Published in:
- 2023
- Publication type:
- Correction Notice
aenmd: annotating escape from nonsense-mediated decay for transcripts with protein-truncating variants.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad556
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- Article
DrForna: visualization of cotranscriptional folding.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad555
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- Article
Correction to: Robust joint clustering of multi-omics single-cell data via multi-modal high-order neighborhood Laplacian matrix optimization.
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- 2023
- Publication type:
- Correction Notice
ePlatypus: an ecosystem for computational analysis of immunogenomics data.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad553
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- Article
μ- PBWT: a lightweight r-indexing of the PBWT for storing and querying UK Biobank data.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad552
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- Article
DeepMHCI: an anchor position-aware deep interaction model for accurate MHC-I peptide binding affinity prediction.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad551
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- Publication type:
- Article
MoleculeExperiment enables consistent infrastructure for molecule-resolved spatial omics data in bioconductor.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad550
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- Article
FunTaxIS-lite: a simple and light solution to investigate protein functions in all living organisms.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad549
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- Publication type:
- Article
Reducing cost in DNA-based data storage by sequence analysis-aided soft information decoding of variable-length reads.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad548
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- Publication type:
- Article
PyDESeq2: a python package for bulk RNA-seq differential expression analysis.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad547
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- Publication type:
- Article
scAce: an adaptive embedding and clustering method for single-cell gene expression data.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad546
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- Publication type:
- Article
Genome-wide multimediator analyses using the generalized Berk–Jones statistics with the composite test.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad544
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- Article
Phylogenetic inference using generative adversarial networks.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad543
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- Article
Towards precise PICO extraction from abstracts of randomized controlled trials using a section-specific learning approach.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad542
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- Article
Multimodal learning of noncoding variant effects using genome sequence and chromatin structure.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad541
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- Article
AliSim-HPC: parallel sequence simulator for phylogenetics.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad540
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- Article
Advancements in computational modelling of biological systems: seventh annual SysMod meeting.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad539
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- Article
Tracking and curating putative SARS-CoV-2 recombinants with RIVET.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad538
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- Article
DCAlign v1.0: aligning biological sequences using co-evolution models and informed priors.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad537
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DecentTree: scalable Neighbour-Joining for the genomic era.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad536
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- Publication type:
- Article
HAPNEST: efficient, large-scale generation and evaluation of synthetic datasets for genotypes and phenotypes.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad535
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- Publication type:
- Article
Machine learning-based quantification for disease uncertainty increases the statistical power of genetic association studies.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad534
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- Publication type:
- Article
GraphCpG: imputation of single-cell methylomes based on locus-aware neighboring subgraphs.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad533
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- Publication type:
- Article
A neighborhood-regularization method leveraging multiview data for predicting the frequency of drug–side effects.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad532
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- Publication type:
- Article
Accessibility of covariance information creates vulnerability in Federated Learning frameworks.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad531
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- Article
IsoFrog: a reversible jump Markov Chain Monte Carlo feature selection-based method for predicting isoform functions.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad530
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- Publication type:
- Article
Joint embedding of biological networks for cross-species functional alignment.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad529
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- Publication type:
- Article
RNA 3D structure modeling by fragment assembly with small-angle X-ray scattering restraints.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad527
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- Publication type:
- Article
MULGA, a unified multi-view graph autoencoder-based approach for identifying drug–protein interaction and drug repositioning.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad524
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- Publication type:
- Article
metGWAS 1.0: an R workflow for network-driven over-representation analysis between independent metabolomic and meta-genome-wide association studies.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad523
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- Publication type:
- Article
CellAnn: a comprehensive, super-fast, and user-friendly single-cell annotation web server.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad521
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- Article
Somatic mutation effects diffused over microRNA dysregulation.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad520
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- Publication type:
- Article
diseaseGPS: auxiliary diagnostic system for genetic disorders based on genotype and phenotype.
- Published in:
- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad517
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- Article