Works matching IS 13674803 AND DT 2022 AND VI 38 AND IP 1
Results: 53
Learning sparse log-ratios for high-throughput sequencing data.
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- Bioinformatics, 2022, v. 38, n. 1, p. 157, doi. 10.1093/bioinformatics/btab645
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Structure-aware protein–protein interaction site prediction using deep graph convolutional network.
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- Bioinformatics, 2022, v. 38, n. 1, p. 125, doi. 10.1093/bioinformatics/btab643
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PsiNorm: a scalable normalization for single-cell RNA-seq data.
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- Bioinformatics, 2022, v. 38, n. 1, p. 164, doi. 10.1093/bioinformatics/btab641
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DisoLipPred: accurate prediction of disordered lipid-binding residues in protein sequences with deep recurrent networks and transfer learning.
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- Bioinformatics, 2022, v. 38, n. 1, p. 115, doi. 10.1093/bioinformatics/btab640
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- Article
Bayesian hierarchical model to estimate DNA methylation conservation in colorectal tumors.
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- Bioinformatics, 2022, v. 38, n. 1, p. 22, doi. 10.1093/bioinformatics/btab637
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OPUS-X: an open-source toolkit for protein torsion angles, secondary structure, solvent accessibility, contact map predictions and 3D folding.
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- Bioinformatics, 2022, v. 38, n. 1, p. 108, doi. 10.1093/bioinformatics/btab633
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Inferring causality in biological oscillators.
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- Bioinformatics, 2022, v. 38, n. 1, p. 196, doi. 10.1093/bioinformatics/btab623
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de novo protein structure prediction by iterative partition sampling, topology adjustment and residue-level distance deviation optimization.
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- Bioinformatics, 2022, v. 38, n. 1, p. 99, doi. 10.1093/bioinformatics/btab620
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Hierarchical Bayesian models of transcriptional and translational regulation processes with delays.
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- Bioinformatics, 2022, v. 38, n. 1, p. 187, doi. 10.1093/bioinformatics/btab618
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ProteinEvolverABC: coestimation of recombination and substitution rates in protein sequences by approximate Bayesian computation.
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- Bioinformatics, 2022, v. 38, n. 1, p. 58, doi. 10.1093/bioinformatics/btab617
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Precise estimation of residue relative solvent accessible area from Cα atom distance matrix using a deep learning method.
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- Bioinformatics, 2022, v. 38, n. 1, p. 94, doi. 10.1093/bioinformatics/btab616
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- Article
DeepAc4C: a convolutional neural network model with hybrid features composed of physicochemical patterns and distributed representation information for identification of N4-acetylcytidine in mRNA.
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- Bioinformatics, 2022, v. 38, n. 1, p. 52, doi. 10.1093/bioinformatics/btab611
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- Article
Joint eQTL mapping and inference of gene regulatory network improves power of detecting both cis- and trans-eQTLs.
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- Bioinformatics, 2022, v. 38, n. 1, p. 149, doi. 10.1093/bioinformatics/btab609
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- Article
Multi-omics data integration by generative adversarial network.
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- Bioinformatics, 2022, v. 38, n. 1, p. 179, doi. 10.1093/bioinformatics/btab608
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- Article
compositional mediation model for a binary outcome: Application to microbiome studies.
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- Bioinformatics, 2022, v. 38, n. 1, p. 16, doi. 10.1093/bioinformatics/btab605
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- Article
qTeller: a tool for comparative multi-genomic gene expression analysis.
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- Bioinformatics, 2022, v. 38, n. 1, p. 236, doi. 10.1093/bioinformatics/btab604
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Improved datasets and evaluation methods for the automatic prediction of DNA-binding proteins.
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- Bioinformatics, 2022, v. 38, n. 1, p. 44, doi. 10.1093/bioinformatics/btab603
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role of CpG island methylator phenotype in the clinical course of hepatocellular carcinoma.
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- Bioinformatics, 2022, v. 38, n. 1, p. 9, doi. 10.1093/bioinformatics/btab600
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De novo protein design by an energy function based on series expansion in distance and orientation dependence.
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- Bioinformatics, 2022, v. 38, n. 1, p. 86, doi. 10.1093/bioinformatics/btab598
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coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies.
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- Bioinformatics, 2022, v. 38, n. 1, p. 1, doi. 10.1093/bioinformatics/btab597
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BitQT: a graph-based approach to the quality threshold clustering of molecular dynamics.
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- Bioinformatics, 2022, v. 38, n. 1, p. 73, doi. 10.1093/bioinformatics/btab595
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Manifold alignment for heterogeneous single-cell multi-omics data integration using Pamona.
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- Bioinformatics, 2022, v. 38, n. 1, p. 211, doi. 10.1093/bioinformatics/btab594
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span-based joint model for extracting entities and relations of bacteria biotopes.
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- Bioinformatics, 2022, v. 38, n. 1, p. 220, doi. 10.1093/bioinformatics/btab593
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Using high-throughput multi-omics data to investigate structural balance in elementary gene regulatory network motifs.
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- Bioinformatics, 2022, v. 38, n. 1, p. 173, doi. 10.1093/bioinformatics/btab577
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Querying multiple sets of P-values through composed hypothesis testing.
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- Bioinformatics, 2022, v. 38, n. 1, p. 141, doi. 10.1093/bioinformatics/btab592
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ramr: an R/Bioconductor package for detection of rare aberrantly methylated regions.
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- Bioinformatics, 2022, v. 38, n. 1, p. 133, doi. 10.1093/bioinformatics/btab586
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Deep learning-based classification of breast cancer cells using transmembrane receptor dynamics.
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- Bioinformatics, 2022, v. 38, n. 1, p. 243, doi. 10.1093/bioinformatics/btab581
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cross-level information transmission network for hierarchical omics data integration and phenotype prediction from a new genotype.
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- Bioinformatics, 2022, v. 38, n. 1, p. 204, doi. 10.1093/bioinformatics/btab580
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ezGeno: an automatic model selection package for genomic data analysis.
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- Bioinformatics, 2022, v. 38, n. 1, p. 30, doi. 10.1093/bioinformatics/btab588
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DAMA: a method for computing multiple alignments of protein structures using local structure descriptors.
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- Bioinformatics, 2022, v. 38, n. 1, p. 80, doi. 10.1093/bioinformatics/btab571
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Co-evolutionary distance predictions contain flexibility information.
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- Bioinformatics, 2022, v. 38, n. 1, p. 65, doi. 10.1093/bioinformatics/btab562
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DeepSec: a deep learning framework for secreted protein discovery in human body fluids.
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- Bioinformatics, 2022, v. 38, n. 1, p. 228, doi. 10.1093/bioinformatics/btab545
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Alpha-XIC: a deep neural network for scoring the coelution of peak groups improves peptide identification by data-independent acquisition mass spectrometry.
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- Bioinformatics, 2022, v. 38, n. 1, p. 38, doi. 10.1093/bioinformatics/btab544
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Ranked choice voting for representative transcripts with TRaCE.
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- Bioinformatics, 2022, v. 38, n. 1, p. 261, doi. 10.1093/bioinformatics/btab542
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SPOT: a web-tool enabling swift profiling of transcriptomes.
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- Bioinformatics, 2022, v. 38, n. 1, p. 284, doi. 10.1093/bioinformatics/btab541
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ModPhred: an integrative toolkit for the analysis and storage of nanopore sequencing DNA and RNA modification data.
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- Bioinformatics, 2022, v. 38, n. 1, p. 257, doi. 10.1093/bioinformatics/btab539
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MDContactCom: a tool to identify differences of protein molecular dynamics from two MD simulation trajectories in terms of interresidue contacts.
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- Bioinformatics, 2022, v. 38, n. 1, p. 273, doi. 10.1093/bioinformatics/btab538
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Python interfaces for the Smoldyn simulator.
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- Bioinformatics, 2022, v. 38, n. 1, p. 291, doi. 10.1093/bioinformatics/btab530
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Refget: standardized access to reference sequences.
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- Bioinformatics, 2022, v. 38, n. 1, p. 299, doi. 10.1093/bioinformatics/btab524
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CoSMeD: a user-friendly web server to estimate 5-year survival probability of left-sided and right-sided colorectal cancer patients using molecular data.
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- Bioinformatics, 2022, v. 38, n. 1, p. 278, doi. 10.1093/bioinformatics/btab523
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quincunx: an R package to query, download and wrangle PGS Catalog data.
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- Bioinformatics, 2022, v. 38, n. 1, p. 294, doi. 10.1093/bioinformatics/btab522
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- Article
FlowGrid enables fast clustering of very large single-cell RNA-seq data.
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- Bioinformatics, 2022, v. 38, n. 1, p. 282, doi. 10.1093/bioinformatics/btab521
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Ontoclick: a web browser extension to facilitate biomedical knowledge curation.
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- Bioinformatics, 2022, v. 38, n. 1, p. 301, doi. 10.1093/bioinformatics/btab520
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Optimal linkage disequilibrium splitting.
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- Bioinformatics, 2022, v. 38, n. 1, p. 255, doi. 10.1093/bioinformatics/btab519
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pKPDB: a protein data bank extension database of pKa and pI theoretical values.
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- Bioinformatics, 2022, v. 38, n. 1, p. 297, doi. 10.1093/bioinformatics/btab518
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CUT&RUNTools 2.0: a pipeline for single-cell and bulk-level CUT&RUN and CUT&Tag data analysis.
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- Bioinformatics, 2022, v. 38, n. 1, p. 252, doi. 10.1093/bioinformatics/btab507
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BtToxin_Digger: a comprehensive and high-throughput pipeline for mining toxin protein genes from Bacillus thuringiensis.
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- Bioinformatics, 2022, v. 38, n. 1, p. 250, doi. 10.1093/bioinformatics/btab506
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D-MANOVA: fast distance-based multivariate analysis of variance for large-scale microbiome association studies.
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- Bioinformatics, 2022, v. 38, n. 1, p. 286, doi. 10.1093/bioinformatics/btab498
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Swarm v3: towards tera-scale amplicon clustering.
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- Bioinformatics, 2022, v. 38, n. 1, p. 267, doi. 10.1093/bioinformatics/btab493
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BioVLAB-Cancer-Pharmacogenomics: tumor heterogeneity and pharmacogenomics analysis of multi-omics data from tumor on the cloud.
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- Bioinformatics, 2022, v. 38, n. 1, p. 275, doi. 10.1093/bioinformatics/btab478
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