Works matching IS 13674803 AND DT 2021 AND VI 37 AND IP 22
Results: 56
On the stability of log-rank test under labeling errors.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4297, doi. 10.1093/bioinformatics/btab693
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Erratum to: Assessing heterogeneity in spatial data using the HTA index with applications to spatial transcriptomics and imaging.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4296, doi. 10.1093/bioinformatics/btab692
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CScape-somatic: distinguishing driver and passenger point mutations in the cancer genome.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4298, doi. 10.1093/bioinformatics/btab654
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Bayesian modeling of spatial molecular profiling data via Gaussian process.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4129, doi. 10.1093/bioinformatics/btab455
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Fast numerical optimization for genome sequencing data in population biobanks.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4148, doi. 10.1093/bioinformatics/btab452
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efam: an expanded, metaproteome-supported HMM profile database of viral protein families.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4202, doi. 10.1093/bioinformatics/btab451
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Normalization by distributional resampling of high throughput single-cell RNA-sequencing data.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4123, doi. 10.1093/bioinformatics/btab450
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convolutional neural network for common coordinate registration of high-resolution histology images.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4216, doi. 10.1093/bioinformatics/btab447
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Methylation-eQTL analysis in cancer research.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4014, doi. 10.1093/bioinformatics/btab443
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Improving sequence-based modeling of protein families using secondary-structure quality assessment.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4083, doi. 10.1093/bioinformatics/btab442
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Detecting copy number alterations in RNA-Seq using SuperFreq.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4023, doi. 10.1093/bioinformatics/btab440
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Humanization of antibodies using a machine learning approach on large-scale repertoire data.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4041, doi. 10.1093/bioinformatics/btab434
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MecCog: a knowledge representation framework for genetic disease mechanism.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4180, doi. 10.1093/bioinformatics/btab432
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ITSoneWB: profiling global taxonomic diversity of eukaryotic communities on Galaxy.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4253, doi. 10.1093/bioinformatics/btab431
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AutoCCS: automated collision cross-section calculation software for ion mobility spectrometry–mass spectrometry.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4193, doi. 10.1093/bioinformatics/btab429
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BERTMHC: improved MHC–peptide class II interaction prediction with transformer and multiple instance learning.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4172, doi. 10.1093/bioinformatics/btab422
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framework to decipher the genetic architecture of combinations of complex diseases: applications in cardiovascular medicine.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4137, doi. 10.1093/bioinformatics/btab417
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EnMCB: an R/bioconductor package for predicting disease progression based on methylation correlated blocks using ensemble models.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4282, doi. 10.1093/bioinformatics/btab415
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Quartet-based inference is statistically consistent under the unified duplication-loss-coalescence model.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4064, doi. 10.1093/bioinformatics/btab414
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cfDNApipe: a comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4251, doi. 10.1093/bioinformatics/btab413
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Oligator: a flexible interface to draw oligosaccharide structures and generate their theoretical tandem mass spectra.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4261, doi. 10.1093/bioinformatics/btab412
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SAMF: a self-adaptive protein modeling framework.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4075, doi. 10.1093/bioinformatics/btab411
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scDetect: a rank-based ensemble learning algorithm for cell type identification of single-cell RNA sequencing in cancer.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4115, doi. 10.1093/bioinformatics/btab410
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CyAnno: a semi-automated approach for cell type annotation of mass cytometry datasets.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4164, doi. 10.1093/bioinformatics/btab409
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PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4048, doi. 10.1093/bioinformatics/btab408
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Identification of evolutionarily stable functional and immunogenic sites across the SARS-CoV-2 proteome and greater coronavirus family.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4033, doi. 10.1093/bioinformatics/btab406
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Tfcancer: a manually curated database of transcription factors associated with human cancers.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4288, doi. 10.1093/bioinformatics/btab405
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Interfacing Seurat with the R tidy universe.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4100, doi. 10.1093/bioinformatics/btab404
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Deep cross-omics cycle attention model for joint analysis of single-cell multi-omics data.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4091, doi. 10.1093/bioinformatics/btab403
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Peel learning for pathway-related outcome prediction.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4108, doi. 10.1093/bioinformatics/btab402
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Jutils: a visualization toolkit for differential alternative splicing events.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4272, doi. 10.1093/bioinformatics/btab401
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MorphoScript: a dedicated analysis to assess the morphology and contractile structures of cardiomyocytes derived from stem cells.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4209, doi. 10.1093/bioinformatics/btab400
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Exploring parallel MPI fault tolerance mechanisms for phylogenetic inference with RAxML-NG.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4056, doi. 10.1093/bioinformatics/btab399
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Super LeArner Prediction of NAb Panels (SLAPNAP): a containerized tool for predicting combination monoclonal broadly neutralizing antibody sensitivity.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4187, doi. 10.1093/bioinformatics/btab398
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3DBionotes COVID-19 edition.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4258, doi. 10.1093/bioinformatics/btab397
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LevioSAM: fast lift-over of variant-aware reference alignments.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4243, doi. 10.1093/bioinformatics/btab396
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Bistability in cell signalling and its significance in identifying potential drug-targets.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4156, doi. 10.1093/bioinformatics/btab395
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Robust and efficient single-cell Hi-C clustering with approximate k-nearest neighbor graphs.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4006, doi. 10.1093/bioinformatics/btab394
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UMI4Cats: an R package to analyze chromatin contact profiles obtained by UMI-4C.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4240, doi. 10.1093/bioinformatics/btab392
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DeepChargePredictor: a web server for predicting QM-based atomic charges via state-of-the-art machine-learning algorithms.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4255, doi. 10.1093/bioinformatics/btab389
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powerEQTL: an R package and shiny application for sample size and power calculation of bulk tissue and single-cell eQTL analysis.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4269, doi. 10.1093/bioinformatics/btab385
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HEAL: an automated deep learning framework for cancer histopathology image analysis.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4291, doi. 10.1093/bioinformatics/btab380
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MotifGenie: a Python application for searching transcription factor binding sequences using ChIP-Seq datasets.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4238, doi. 10.1093/bioinformatics/btab379
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Sparse allele vectors and the savvy software suite.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4248, doi. 10.1093/bioinformatics/btab378
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Semi-supervised peak calling with SPAN and JBR genome browser.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4235, doi. 10.1093/bioinformatics/btab376
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FBA: feature barcoding analysis for single cell RNA-Seq.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4266, doi. 10.1093/bioinformatics/btab375
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Bathometer: lightning fast depth-of-reads query.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4233, doi. 10.1093/bioinformatics/btab372
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CrossTalkeR: analysis and visualization of ligand–receptorne tworks.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4263, doi. 10.1093/bioinformatics/btab370
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DetectIS: a pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4230, doi. 10.1093/bioinformatics/btab366
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SimText: a text mining framework for interactive analysis and visualization of similarities among biomedical entities.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4285, doi. 10.1093/bioinformatics/btab365
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