Works matching IS 13674803 AND DT 2021 AND VI 37 AND IP 16
Results: 48
Erratum to: An information-theoretic approach for measuring the distance of organ tissue samples using their transcriptomic signatures.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2512, doi. 10.1093/bioinformatics/btab483
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ELIXIR: providing a sustainable infrastructure for life science data at European scale.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2506, doi. 10.1093/bioinformatics/btab481
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lncLocator 2.0: a cell-line-specific subcellular localization predictor for long non-coding RNAs with interpretable deep learning.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2308, doi. 10.1093/bioinformatics/btab127
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Granger-causal testing for irregularly sampled time series with application to nitrogen signalling in Arabidopsis.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2450, doi. 10.1093/bioinformatics/btab126
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Gene-set integrative analysis of multi-omics data using tensor-based association test.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2259, doi. 10.1093/bioinformatics/btab125
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Tandem repeat interval pattern identifies animal taxa.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2250, doi. 10.1093/bioinformatics/btab124
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Active learning to classify macromolecular structures in situ for less supervision in cryo-electron tomography.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2340, doi. 10.1093/bioinformatics/btab123
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BloodGen3Module: blood transcriptional module repertoire analysis and visualization using R.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2382, doi. 10.1093/bioinformatics/btab121
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VoroCNN: deep convolutional neural network built on 3D Voronoi tessellation of protein structures.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2332, doi. 10.1093/bioinformatics/btab118
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d-PBWT: dynamic positional Burrows–Wheeler transform.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2390, doi. 10.1093/bioinformatics/btab117
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ESCO: single cell expression simulation incorporating gene co-expression.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2374, doi. 10.1093/bioinformatics/btab116
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E-MAGMA: an eQTL-informed method to identify risk genes using genome-wide association study summary statistics.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2245, doi. 10.1093/bioinformatics/btab115
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A variable selection approach for highly correlated predictors in high-dimensional genomic data.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2238, doi. 10.1093/bioinformatics/btab114
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Inferring perturbation profiles of cancer samples.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2441, doi. 10.1093/bioinformatics/btab113
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Accurate deep learning off-target prediction with novel sgRNA-DNA sequence encoding in CRISPR-Cas9 gene editing.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2299, doi. 10.1093/bioinformatics/btab112
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Graph contextualized attention network for predicting synthetic lethality in human cancers.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2432, doi. 10.1093/bioinformatics/btab110
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Subtype-GAN: a deep learning approach for integrative cancer subtyping of multi-omics data.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2231, doi. 10.1093/bioinformatics/btab109
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CuBlock: a cross-platform normalization method for gene-expression microarrays.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2365, doi. 10.1093/bioinformatics/btab105
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Genozip: a universal extensible genomic data compressor.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2225, doi. 10.1093/bioinformatics/btab102
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PPIT: an R package for inferring microbial taxonomy from nifH sequences.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2289, doi. 10.1093/bioinformatics/btab100
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Inference of gene regulatory networks using pseudo-time series data.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2423, doi. 10.1093/bioinformatics/btab099
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NetQuilt: deep multispecies network-based protein function prediction using homology-informed network similarity.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2414, doi. 10.1093/bioinformatics/btab098
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PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2325, doi. 10.1093/bioinformatics/btab096
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Differentially conserved amino acid positions may reflect differences in SARS-CoV-2 and SARS-CoV behaviour.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2282, doi. 10.1093/bioinformatics/btab094
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FASTRAL: improving scalability of phylogenomic analysis.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2317, doi. 10.1093/bioinformatics/btab093
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A novel method for data fusion over entity-relation graphs and its application to protein–protein interaction prediction.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2275, doi. 10.1093/bioinformatics/btab092
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Per-sample standardization and asymmetric winsorization lead to accurate clustering of RNA-seq expression profiles.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2356, doi. 10.1093/bioinformatics/btab091
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An OMICs-based meta-analysis to support infection state stratification.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2347, doi. 10.1093/bioinformatics/btab089
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Multi-layered network-based pathway activity inference using directed random walks: application to predicting clinical outcomes in urologic cancer.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2405, doi. 10.1093/bioinformatics/btab086
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Detecting high-scoring local alignments in pangenome graphs.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2266, doi. 10.1093/bioinformatics/btab077
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MEWpy: a computational strain optimization workbench in Python.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2494, doi. 10.1093/bioinformatics/btab013
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SubtypeDrug: a software package for prioritization of candidate cancer subtype-specific drugs.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2491, doi. 10.1093/bioinformatics/btab011
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ProDerAl: reference position dependent alignment.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2479, doi. 10.1093/bioinformatics/btab008
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clinker & clustermap.js: automatic generation of gene cluster comparison figures.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2473, doi. 10.1093/bioinformatics/btab007
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SWITCHES: Searchable Web Interface for Topologies of CHEmical Switches.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2504, doi. 10.1093/bioinformatics/btab006
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MBG: Minimizer-based sparse de Bruijn Graph construction.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2476, doi. 10.1093/bioinformatics/btab004
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Nebulosa recovers single-cell gene expression signals by kernel density estimation.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2485, doi. 10.1093/bioinformatics/btab003
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Bios2cor: an R package integrating dynamic and evolutionary correlations to identify functionally important residues in proteins.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2483, doi. 10.1093/bioinformatics/btab002
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FinaleDB: a browser and database of cell-free DNA fragmentation patterns.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2502, doi. 10.1093/bioinformatics/btaa999
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movAPA: modeling and visualization of dynamics of alternative polyadenylation across biological samples.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2470, doi. 10.1093/bioinformatics/btaa997
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LexExp: a system for automatically expanding concept lexicons for noisy biomedical texts.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2499, doi. 10.1093/bioinformatics/btaa995
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AVIA 3.0: interactive portal for genomic variant and sample level analysis.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2467, doi. 10.1093/bioinformatics/btaa994
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i2d: an R package for simulating data from images and the implications in biomedical research.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2497, doi. 10.1093/bioinformatics/btaa991
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miqoGraph: fitting admixture graphs using mixed-integer quadratic optimization.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2488, doi. 10.1093/bioinformatics/btaa988
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pdm_utils: a SEA-PHAGES MySQL phage database management toolkit.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2464, doi. 10.1093/bioinformatics/btaa983
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Quantification of aneuploidy in targeted sequencing data using ASCETS.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2461, doi. 10.1093/bioinformatics/btaa980
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eMPRess: a systematic cophylogeny reconciliation tool.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2481, doi. 10.1093/bioinformatics/btaa978
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BiCoN: network-constrained biclustering of patients and omics data.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2398, doi. 10.1093/bioinformatics/btaa1076
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