Works matching DE "METAGENOMICS"

Results: 5000

Letter to Editor: Addressing Methodological and Interpretative Gaps in the Study on Bowel Preparation and Gut Microbiotad.

Published in:

Journal of Gastroenterology & Hepatology, 2025, v. 40, n. 5, p. 1330, doi. 10.1111/jgh.16957

By:

Sathian, Brijesh;
Al Hamad, Hanadi;
Iqbal, Javed

Publication type:

Article

The gut microbiome is associated with disease‐free survival in stage I–III colorectal cancer patients.

Published in:

International Journal of Cancer, 2025, v. 157, n. 1, p. 64, doi. 10.1002/ijc.35342

By:

Byrd, Doratha A.;
Damerell, Victoria;
Gomez Morales, Maria F.;
Hogue, Stephanie R.;
Lin, Tengda;
Ose, Jennifer;
Himbert, Caroline;
Ilozumba, Mmadili N.;
Kahlert, Christoph;
Shibata, David;
Toriola, Adetunji T.;
Li, Christopher I.;
Figueiredo, Jane;
Stephens, W. Zac;
Warby, Christy A.;
Hardikar, Sheetal;
Siegel, Erin M.;
Round, June;
Ulrich, Cornelia M.;
Gigic, Biljana

Publication type:

Article

Whole genome comparisons reveal gut-to-lung translocation of Escherichia coli and Burkholderia cenocepacia in two cases of ventilator-associated pneumonia in ICU patients.

Published in:

Respiratory Research, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12931-025-03204-x

By:

Gao, Huihui;
Xu, Lei;
Liu, Yixin;
Wang, Xiaolong;
Zhu, Siyuan;
Lin, Huai;
Gao, Yuting;
Mao, Daqing;
Lu, Xing;
Luo, Yi

Publication type:

Article

Metagenomic analysis of NIPT raw data suggests high negative predictive value for congenital cytomegalovirus infection screening.

Published in:

Ultrasound in Obstetrics & Gynecology, 2025, v. 65, n. 5, p. 653, doi. 10.1002/uog.29221

By:

Bourgon, N.;
Padioleau, I.;
Guibon, J.;
Fourgeaud, J.;
Lermine, A.;
Meurice, G.;
Guilleminot, T.;
Bussieres, L.;
Leruez‐Ville, M.;
Dupont, J.‐M.;
Ville, Y.

Publication type:

Article

白酒酿造功能微生物的多样性及其应用研究进展.

Published in:

China Brewing, 2025, v. 44, n. 4, p. 7, doi. 10.11882/j.issn.0254-5071.2025.04.002

By:

夏序春;
班世栋;
罗小叶;
王晓丹

Publication type:

Article

Contribution of shotgun metagenomics in the diagnosis of a subcutaneous phaeohyphomycosis caused by Parathyridaria percutanea.

Published in:

British Journal of Dermatology, 2025, v. 192, n. 5, p. 948, doi. 10.1093/bjd/ljaf018

By:

Monpierre, Lorra;
Angebault, Cécile;
Hua, Camille;
Merio, Léa;
Ortonne, Nicolas;
Lafont, Emmanuel;
Foulet, Françoise;
Botterel, Françoise

Publication type:

Article

Distribution status and influencing factors of antibiotic resistance genes in the Chaohu Lake, China.

Published in:

PeerJ, 2025, p. 1, doi. 10.7717/peerj.19384

By:

Zhang, Yan;
Ding, Guoao;
Gao, Yue;
Li, Ying;
Zhou, Peng;
Wu, Li;
Zhou, Minghui;
Wang, Jingjing;
Tang, Jun

Publication type:

Article

Feature selection with vector-symbolic architectures: a case study on microbial profiles of shotgun metagenomic samples of colorectal cancer.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf177

By:

Cumbo, Fabio;
Truglia, Simone;
Weitschek, Emanuel;
Blankenberg, Daniel

Publication type:

Article

FGeneBERT: function-driven pre-trained gene language model for metagenomics.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf149

By:

Duan, Chenrui;
Zang, Zelin;
Xu, Yongjie;
He, Hang;
Li, Siyuan;
Liu, Zihan;
Lei, Zhen;
Zheng, Ju-Sheng;
Li, Stan Z

Publication type:

Article

A review of neural networks for metagenomic binning.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf065

By:

Herazo-Álvarez, Jair;
Mora, Marco;
Cuadros-Orellana, Sara;
Vilches-Ponce, Karina;
Hernández-García, Ruber

Publication type:

Article

Genomic characterisation of novel extremophile lineages from the thalassohaline lake Dziani Dzaha expands the metabolic repertoire of the PVC superphylum.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00699-1

By:

Vigneron, Adrien;
Cloarec, Lilian A.;
Brochier-Armanet, Céline;
Flandrois, Jean Pierre;
Troussellier, Marc;
Bernard, Cécile;
Agogué, Hélène;
Oger, Philippe M.;
Hugoni, Mylène

Publication type:

Article

Impact of microbiological molecular methodologies on adaptive sampling using nanopore sequencing in metagenomic studies.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00704-7

By:

Herbert, Josephine;
Thompson, Stanley;
Beckett, Angela H.;
Robson, Samuel C.

Publication type:

Article

Metagenomic and Molecular Detection of Novel Fecal Viruses in Free-Ranging Agile Wallabies.

Published in:

EcoHealth, 2023, v. 20, n. 4, p. 427, doi. 10.1007/s10393-023-01659-2

By:

Okoh, God'spower Richard;
Ariel, Ellen;
Whitmore, David;
Horwood, Paul F.

Publication type:

Article

Metagenomic Analysis Reveals Previously Undescribed Bat Coronavirus Strains in Eswatini.

Published in:

EcoHealth, 2021, v. 18, n. 4, p. 421, doi. 10.1007/s10393-021-01567-3

By:

Shapiro, Julie Teresa;
Mollerup, Sarah;
Jensen, Randi Holm;
Olofsson, Jill Katharina;
Nguyen, Nam-phuong D.;
Hansen, Thomas Arn;
Vinner, Lasse;
Monadjem, Ara;
McCleery, Robert A.;
Hansen, Anders J.

Publication type:

Article

Where Next for Microbiome Research?

Published in:

PLoS Biology, 2015, v. 13, n. 1, p. 1, doi. 10.1371/journal.pbio.1002050

By:

Waldor, Matthew K.;
Tyson, Gene;
Borenstein, Elhanan;
Ochman, Howard;
Moeller, Andrew;
Finlay, B. Brett;
Kong, Heidi H.;
Gordon, Jeffrey I.;
Nelson, Karen E.;
Dabbagh, Karim;
Smith, Hamilton

Publication type:

Article

Minimizing the deep coalescence cost.

Published in:

Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 5, p. N.PAG, doi. 10.1142/S0219720018400218

By:

Dąbkowski, Dawid;
Tabaszewski, Paweł;
Górecki, Paweł

Publication type:

Article

Metagenome sequence clustering with hash-based canopies.

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 6, p. -1, doi. 10.1142/S0219720017400066

By:

Rahman, Mohammad Arifur;
LaPierre, Nathan;
Rangwala, Huzefa;
Barbara, Daniel

Publication type:

Article

Introduction to selected papers from the 8th International Conference on Bioinformatics and Computational Biology (BICOB 2016).

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 3, p. -1, doi. 10.1142/S0219720017020024

By:

Haspel, Nurit;
Ioerger, Thomas;
Al-Mubaid, Hisham

Publication type:

Article

An accurate and fast alignment-free method for profiling microbial communities.

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 3, p. -1, doi. 10.1142/S0219720017400017

By:

Pham, Diem-Trang;
Gao, Shanshan;
Phan, Vinhthuy

Publication type:

Article

Grid-Assembly: An oligonucleotide composition-based partitioning strategy to aid metagenomic sequence assembly.

Published in:

Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 3, p. -1, doi. 10.1142/S0219720015410048

By:

Ghosh, Tarini Shankar;
Mehra, Varun;
Mande, Sharmila S.

Publication type:

Article

Comparative metagenome analysis of an Alaskan glacier.

Published in:

Journal of Bioinformatics & Computational Biology, 2014, v. 12, n. 2, p. -1, doi. 10.1142/S0219720014410030

By:

Choudhari, Sulbha;
Lohia, Ruchi;
Grigoriev, Andrey

Publication type:

Article

LARGE-SCALE METAGENOMIC SEQUENCE CLUSTERING ON MAP-REDUCE CLUSTERS.

Published in:

Journal of Bioinformatics & Computational Biology, 2013, v. 11, n. 1, p. -1, doi. 10.1142/S0219720013400015

By:

YANG, XIAO;
ZOLA, JAROSLAW;
ALURU, SRINIVAS

Publication type:

Article

METAGENOMIC TAXONOMIC CLASSIFICATION USING EXTREME LEARNING MACHINES.

Published in:

Journal of Bioinformatics & Computational Biology, 2012, v. 10, n. 5, p. -1, doi. 10.1142/S0219720012500151

By:

RASHEED, ZEEHASHAM;
RANGWALA, HUZEFA

Publication type:

Article

An Atypical Naturally Split Intein Engineered for Highly Efficient Protein Labeling.

Published in:

Angewandte Chemie, 2014, v. 126, n. 5, p. 1330, doi. 10.1002/ange.201307969

By:

Thiel, Ilka V.;
Volkmann, Gerrit;
Pietrokovski, Shmuel;
Mootz, Henning D.

Publication type:

Article

Challenges of metagenomics and single-cell genomics approaches for exploring cyanobacterial diversity.

Published in:

Photosynthesis Research, 2015, v. 126, n. 1, p. 135, doi. 10.1007/s11120-014-0066-9

By:

Davison, Michelle;
Hall, Eric;
Zare, Richard;
Bhaya, Devaki

Publication type:

Article

High-throughput amplicon sequencing demonstrates extensive diversity of xylanase genes in the sediment of soda lake Dabusu.

Published in:

Biotechnology Letters, 2019, v. 41, n. 3, p. 409, doi. 10.1007/s10529-019-02646-w

By:

Wang, Guozeng;
Ren, Yaxin;
Ng, Tzi Bun;
Streit, Wolfgang R.;
Ye, Xiuyun

Publication type:

Article

Characterization of an inhibitor-resistant endo-1,4-β-mannanase from the gut microflora metagenome of Hermetia illucens.

Published in:

Biotechnology Letters, 2018, v. 40, n. 9/10, p. 1377, doi. 10.1007/s10529-018-2596-2

By:

Song, Jaeeun;
Kim, Su-Yeon;
Kim, Dae-Hyuk;
Lee, Young-Seok;
Sim, Joon-Soo;
Hahn, Bum-Soo;
Lee, Chang-Muk

Publication type:

Article

Direct cloning, expression of a thermostable xylanase gene from the metagenomic DNA of cow dung compost and enzymatic production of xylooligosaccharides from corncob.

Published in:

Biotechnology Letters, 2015, v. 37, n. 9, p. 1877, doi. 10.1007/s10529-015-1857-6

By:

Sun, Ming-zhe;
Zheng, Hong-chen;
Meng, Ling-cai;
Sun, Jun-she;
Song, Hui;
Bao, Yun-juan;
Pei, Hai-sheng;
Yan, Zheng;
Zhang, Xiu-qing;
Zhang, Jing-sheng;
Liu, Yi-han;
Lu, Fu-ping

Publication type:

Article

New dioxygenase from metagenomic library from Brazilian soil: insights into antibiotic resistance and bioremediation.

Published in:

Biotechnology Letters, 2015, v. 37, n. 9, p. 1809, doi. 10.1007/s10529-015-1861-x

By:

Santos, Débora;
Istvan, Paula;
Noronha, Eliane;
Quirino, Betânia;
Krüger, Ricardo

Publication type:

Article

Cloning and characterization of a novel GH44 family endoglucanase from mangrove soil metagenomic library.

Published in:

Biotechnology Letters, 2014, v. 36, n. 8, p. 1701, doi. 10.1007/s10529-014-1531-4

By:

Mai, Zhimao;
Su, Hongfei;
Yang, Jian;
Huang, Sijun;
Zhang, Si

Publication type:

Article

Expression and characterization of a thermostable penicillin G acylase from an environmental metagenomic library.

Published in:

Biotechnology Letters, 2014, v. 36, n. 3, p. 617, doi. 10.1007/s10529-013-1403-3

By:

Zhang, Qian;
Xu, Hui;
Zhao, Jing;
Zeng, Runying

Publication type:

Article

Discovery of a novel esterase subfamily sharing an identified arm sequence (ArmEst) by gene-specific metagenomic PCR.

Published in:

Biotechnology Letters, 2013, v. 35, n. 11, p. 1937, doi. 10.1007/s10529-013-1293-4

By:

Zhang, Ao;
Zhao, Rong;
Jin, Peng;
Ma, Lifang;
Xiong, Xiaolong;
Xie, Tian;
Pei, Xiaolin;
Yu, Li;
Yin, Xiaopu;
Wang, Qiuyan

Publication type:

Article

Metagenomic cloning and characterization of Na/H antiporter genes taken from sediments in Chaerhan Salt Lake in China.

Published in:

Biotechnology Letters, 2013, v. 35, n. 4, p. 619, doi. 10.1007/s10529-012-1122-1

By:

Wang, Xiaoyu;
Xu, Feng;
Chen, Sanfeng

Publication type:

Article

Bioactive compounds synthesized by non-ribosomal peptide synthetases and type-I polyketide synthases discovered through genome-mining and metagenomics.

Published in:

Biotechnology Letters, 2012, v. 34, n. 8, p. 1393, doi. 10.1007/s10529-012-0919-2

By:

Nikolouli, Katerina;
Mossialos, Dimitris

Publication type:

Article

Life at extreme elevations on Atacama volcanoes: the closest thing to Mars on Earth?

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 8, p. 1389, doi. 10.1007/s10482-018-1066-0

By:

Schmidt, S. K.;
Gendron, E. M. S.;
Vincent, K.;
Solon, A. J.;
Sommers, P.;
Schubert, Z. R.;
Vimercati, L.;
Porazinska, D. L.;
Darcy, J. L.;
Sowell, P.

Publication type:

Article

Distinct taxonomic and functional composition of soil microbiomes along the gradient forest-restinga-mangrove in southeastern Brazil.

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 1, p. 101, doi. 10.1007/s10482-017-0931-6

By:

Mendes, Lucas William;
Tsai, Siu Mui

Publication type:

Article

Further analysis reveals new gut microbiome markers of type 2 diabetes mellitus.

Published in:

Antonie van Leeuwenhoek, 2017, v. 110, n. 3, p. 445, doi. 10.1007/s10482-016-0805-3

By:

Wang, Xiaokai;
Xu, Xiaoqiang;
Xia, Yan

Publication type:

Article

Applying functional metagenomics to search for novel lignocellulosic enzymes in a microbial consortium derived from a thermophilic composting phase of sugarcane bagasse and cow manure.

Published in:

Antonie van Leeuwenhoek, 2016, v. 109, n. 9, p. 1217, doi. 10.1007/s10482-016-0723-4

By:

Colombo, Lívia;
Oliveira, Marcelo;
Carneiro, Deisy;
Souza, Robson;
Alvim, Mariana;
Santos, Josenilda;
Silva, Cynthia;
Vidigal, Pedro;
Silveira, Wendel;
Passos, Flávia

Publication type:

Article

Characterisation of the bacterial community structures in the intestine of Lampetra morii.

Published in:

Antonie van Leeuwenhoek, 2016, v. 109, n. 7, p. 979, doi. 10.1007/s10482-016-0699-0

By:

Li, Yingying;
Xie, Wenfang;
Li, Qingwei

Publication type:

Article

Exploring the sheep rumen microbiome for carbohydrate-active enzymes.

Published in:

Antonie van Leeuwenhoek, 2015, v. 108, n. 1, p. 15, doi. 10.1007/s10482-015-0459-6

By:

Lopes, Lucas;
Souza Lima, André;
Taketani, Rodrigo;
Darias, Phillip;
Silva, Lília;
Romagnoli, Emiliana;
Louvandini, Helder;
Abdalla, Adibe;
Mendes, Rodrigo

Publication type:

Article

A novel d-amino acid oxidase from a contaminated agricultural soil metagenome and its characterization.

Published in:

Antonie van Leeuwenhoek, 2015, v. 107, n. 6, p. 1615, doi. 10.1007/s10482-015-0457-8

By:

Ou, Qian;
Liu, Yao;
Deng, Jie;
Chen, Gao;
Yang, Ying;
Shen, Peihong;
Wu, Bo;
Jiang, Chengjian

Publication type:

Article

Composition and predicted functional ecology of mussel-associated bacteria in Indonesian marine lakes.

Published in:

Antonie van Leeuwenhoek, 2015, v. 107, n. 3, p. 821, doi. 10.1007/s10482-014-0375-1

By:

Cleary, Daniel;
Becking, Leontine;
Polónia, Ana;
Freitas, Rossana;
Gomes, Newton

Publication type:

Article

Potential applications of gut microbiota to control human physiology.

Published in:

Antonie van Leeuwenhoek, 2013, v. 104, n. 5, p. 609, doi. 10.1007/s10482-013-0008-0

By:

Umu, Özgün;
Oostindjer, Marije;
Pope, Phillip;
Svihus, Birger;
Egelandsdal, Bjørg;
Nes, Ingolf;
Diep, Dzung

Publication type:

Article

Metagenomic Analysis of Bacterial Community and Isolation of Representative Strains from Vranjska Banja Hot Spring, Serbia.

Published in:

Microbial Ecology, 2023, v. 86, n. 4, p. 2344, doi. 10.1007/s00248-023-02242-6

By:

Malesevic, Milka;
Stanisavljevic, Nemanja;
Matijasevic, Danka;
Curcic, Jovana;
Tasic, Vukasin;
Tasic, Srdjan;
Kojic, Milan

Publication type:

Article

A Metagenomic Time-Series Approach to Assess the Ecological Stability of Microbial Mats in a Seasonally Fluctuating Environment.

Published in:

Microbial Ecology, 2023, v. 86, n. 4, p. 2252, doi. 10.1007/s00248-023-02231-9

By:

Madrigal-Trejo, David;
Sánchez-Pérez, Jazmín;
Espinosa-Asuar, Laura;
Valdivia-Anistro, Jorge A.;
Eguiarte, Luis E.;
Souza, Valeria

Publication type:

Article

A Metagenomic and Amplicon Sequencing Combined Approach Reveals the Best Primers to Study Marine Aerobic Anoxygenic Phototrophs.

Published in:

Microbial Ecology, 2023, v. 86, n. 3, p. 2161, doi. 10.1007/s00248-023-02220-y

By:

Gazulla, Carlota R.;
Cabello, Ana María;
Sánchez, Pablo;
Gasol, Josep M.;
Sánchez, Olga;
Ferrera, Isabel

Publication type:

Article

Correction to: Mediative Mechanism of Freezing/Thawing on Greenhouse Gas Emissions in an Inland Saline Alkaline Wetland: a Metagenomic Analysis.

Published in:

2023

By:

Zhang, Yupeng;
Liu, Fengqin;
Liang, Hong;
Gao, Dawen

Publication type:

Correction Notice

Mediative Mechanism of Freezing/Thawing on Greenhouse Gas Emissions in an Inland Saline-Alkaline Wetland: a Metagenomic Analysis.

Published in:

Microbial Ecology, 2023, v. 86, n. 2, p. 985, doi. 10.1007/s00248-022-02165-8

By:

Zhang, Yupeng;
Liu, Fengqin;
Liang, Hong;
Gao, Dawen

Publication type:

Article

Functional Redundancy in Bat Microbial Assemblage in the Presence of the White Nose Pathogen.

Published in:

Microbial Ecology, 2023, v. 86, n. 1, p. 713, doi. 10.1007/s00248-022-02098-2

By:

Grisnik, Matthew;
Grinath, Joshua B.;
Munafo Jr, John P.;
Walker, Donald M.

Publication type:

Article

An Environmental DNA Primer for Microbial and Restoration Ecology.

Published in:

Microbial Ecology, 2023, v. 85, n. 3, p. 796, doi. 10.1007/s00248-022-02168-5

By:

Tessler, Michael;
Cunningham, Seth W.;
Ingala, Melissa R.;
Warring, Sally D.;
Brugler, Mercer R.

Publication type:

Article