Works matching IS 14675463 AND DT 2021 AND VI 22 AND IP 2

Results: 120

Cooperative driver pathway discovery via fusion of multi-relational data of genes, miRNAs and pathways.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1984, doi. 10.1093/bib/bbz167

By:

Wang, Jun;
Yang, Ziying;
Domeniconi, Carlotta;
Zhang, Xiangliang;
Yu, Guoxian

Publication type:

Article

Deep learning in bioinformatics and biomedicine.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1513, doi. 10.1093/bib/bbab087

By:

Berrar, Daniel;
Dubitzky, Werner

Publication type:

Article

A model for pH coupling of the SARS-CoV-2 spike protein open/closed equilibrium.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1499, doi. 10.1093/bib/bbab056

By:

Warwicker, Jim

Publication type:

Article

Functional alterations caused by mutations reflect evolutionary trends of SARS-CoV-2.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1442, doi. 10.1093/bib/bbab042

By:

Cheng, Liang;
Han, Xudong;
Zhu, Zijun;
Qi, Changlu;
Wang, Ping;
Zhang, Xue

Publication type:

Article

An absolute human stemness index associated with oncogenic dedifferentiation.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 2151, doi. 10.1093/bib/bbz174

By:

Zheng, Hailong;
Song, Kai;
Fu, Yelin;
You, Tianyi;
Yang, Jing;
Guo, Wenbing;
Wang, Kai;
Jin, Liangliang;
Gu, Yunyan;
Qi, Lishuang;
Zhao, Wenyuan

Publication type:

Article

Biomedical data and computational models for drug repositioning: a comprehensive review.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1604, doi. 10.1093/bib/bbz176

By:

Luo, Huimin;
Li, Min;
Yang, Mengyun;
Wu, Fang-Xiang;
Li, Yaohang;
Wang, Jianxin

Publication type:

Article

Roles of host small RNAs in the evolution and host tropism of coronaviruses.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1096, doi. 10.1093/bib/bbab027

By:

Meng, Qingren;
Chu, Yanan;
Shao, Changjun;
Chen, Jing;
Wang, Jian;
Gao, Zhancheng;
Yu, Jun;
Kang, Yu

Publication type:

Article

Identification of biomarkers and pathways for the SARS-CoV-2 infections that make complexities in pulmonary arterial hypertension patients.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1451, doi. 10.1093/bib/bbab026

By:

Taz, Tasnimul Alam;
Ahmed, Kawsar;
Paul, Bikash Kumar;
Al-Zahrani, Fahad Ahmed;
Mahmud, S M Hasan;
Moni, Mohammad Ali

Publication type:

Article

Mass spectrometry–based protein identification in proteomics—a review.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1620, doi. 10.1093/bib/bbz163

By:

Noor, Zainab;
Ahn, Seong Beom;
Baker, Mark S;
Ranganathan, Shoba;
Mohamedali, Abidali

Publication type:

Article

Whole genome analysis of more than 10 000 SARS-CoV-2 virus unveils global genetic diversity and target region of NSP6.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1106, doi. 10.1093/bib/bbab025

By:

Saha, Indrajit;
Ghosh, Nimisha;
Pradhan, Ayan;
Sharma, Nikhil;
Maity, Debasree;
Mitra, Kaushik

Publication type:

Article

Bioinformatics helping to mitigate the impact of COVID-19 – Editorial.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 613, doi. 10.1093/bib/bbab063

By:

Cannataro, Mario;
Harrison, Andrew

Publication type:

Article

The miRNA: a small but powerful RNA for COVID-19.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1137, doi. 10.1093/bib/bbab062

By:

Zhang, Song;
Amahong, Kuerbannisha;
Sun, Xiuna;
Lian, Xichen;
Liu, Jin;
Sun, Huaicheng;
Lou, Yan;
Zhu, Feng;
Qiu, Yunqing

Publication type:

Article

Unsupervised and self-supervised deep learning approaches for biomedical text mining.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1592, doi. 10.1093/bib/bbab016

By:

Nadif, Mohamed;
Role, François

Publication type:

Article

A molecular modelling approach for identifying antiviral selenium-containing heterocyclic compounds that inhibit the main protease of SARS-CoV-2: an in silico investigation.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1476, doi. 10.1093/bib/bbab045

By:

Rakib, Ahmed;
Nain, Zulkar;
Sami, Saad Ahmed;
Mahmud, Shafi;
Islam, Ashiqul;
Ahmed, Shahriar;
Siddiqui, Adnan Bin Faisul;
Babu, S M Omar Faruque;
Hossain, Payar;
Shahriar, Asif;
Nainu, Firzan;
Emran, Talha Bin;
Simal-Gandara, Jesus

Publication type:

Article

Comparison of the binding characteristics of SARS-CoV and SARS-CoV-2 RBDs to ACE2 at different temperatures by MD simulations.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1122, doi. 10.1093/bib/bbab044

By:

Yan, Fang-Fang;
Gao, Feng

Publication type:

Article

Lysosome activation in peripheral blood mononuclear cells and prognostic significance of circulating LC3B in COVID-19.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1466, doi. 10.1093/bib/bbab043

By:

Fang, Shisong;
Zhang, Lin;
Liu, Yingzhi;
Xu, Wenye;
Wu, Weihua;
Huang, Ziheng;
Wang, Xin;
Liu, Hui;
Sun, Ying;
Zhang, Renli;
Peng, Bo;
Liu, Xiaodong;
Sun, Xiao;
Yu, Jun;
Chan, Francis Ka Leung;
Ng, Siew Chien;
Wong, Sunny Hei;
Wang, Maggie Hai Tian;
Gin, Tony;
Joynt, Gavin Matthew

Publication type:

Article

Corrigendum to: Inferring microenvironmental regulation of gene expression from single-cell RNA sequencing data using scMLnet with an application to COVID-19.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1511, doi. 10.1093/bib/bbab015

By:

Cheng, Jinyu;
Zhang, Ji;
Wu, Zhongdao;
Sun, Xiaoqiang

Publication type:

Article

Genome annotation of disease-causing microorganisms.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 845, doi. 10.1093/bib/bbab004

By:

Dong, Yibo;
Li, Chang;
Kim, Kami;
Cui, Liwang;
Liu, Xiaoming

Publication type:

Article

Diseasome and comorbidities complexities of SARS-CoV-2 infection with common malignant diseases.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1415, doi. 10.1093/bib/bbab003

By:

Satu, Md Shahriare;
Khan, Md Imran;
Rahman, Md Rezanur;
Howlader, Koushik Chandra;
Roy, Shatabdi;
Roy, Shuvo Saha;
Quinn, Julian M W;
Moni, Mohammad Ali

Publication type:

Article

An integrated approach to determine the abundance, mutation rate and phylogeny of the SARS-CoV-2 genome.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1065, doi. 10.1093/bib/bbaa437

By:

Desai, Sanket;
Rashmi, Sonal;
Rane, Aishwarya;
Dharavath, Bhasker;
Sawant, Aniket;
Dutt, Amit

Publication type:

Article

Virtual screening and molecular dynamics simulation study of plant-derived compounds to identify potential inhibitors of main protease from SARS-CoV-2.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1402, doi. 10.1093/bib/bbaa428

By:

Mahmud, Shafi;
Uddin, Mohammad Abu Raihan;
Paul, Gobindo Kumar;
Shimu, Mst Sharmin Sultana;
Islam, Saiful;
Rahman, Ekhtiar;
Islam, Ariful;
Islam, Md Samiul;
Promi, Maria Meha;
Emran, Talha Bin;
Saleh, Md Abu

Publication type:

Article

Bioinformatics and system biology approach to identify the influences of COVID-19 on cardiovascular and hypertensive comorbidities.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1387, doi. 10.1093/bib/bbaa426

By:

Nashiry, Asif;
Sumi, Shauli Sarmin;
Islam, Salequl;
Quinn, Julian M W;
Moni, Mohammad Ali

Publication type:

Article

Health informatics and EHR to support clinical research in the COVID-19 pandemic: an overview.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 812, doi. 10.1093/bib/bbaa418

By:

Dagliati, Arianna;
Malovini, Alberto;
Tibollo, Valentina;
Bellazzi, Riccardo

Publication type:

Article

Integrated network analysis reveals new genes suggesting COVID-19 chronic effects and treatment.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1430, doi. 10.1093/bib/bbaa417

By:

Pavel, Alisa;
Giudice, Giusy del;
Federico, Antonio;
Lieto, Antonio Di;
Kinaret, Pia A S;
Serra, Angela;
Greco, Dario

Publication type:

Article

HVIDB: a comprehensive database for human–virus protein–protein interactions.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 832, doi. 10.1093/bib/bbaa425

By:

Yang, Xiaodi;
Lian, Xianyi;
Fu, Chen;
Wuchty, Stefan;
Yang, Shiping;
Zhang, Ziding

Publication type:

Article

DrugRepV: a compendium of repurposed drugs and chemicals targeting epidemic and pandemic viruses.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1076, doi. 10.1093/bib/bbaa421

By:

Rajput, Akanksha;
Kumar, Archit;
Megha, Kirti;
Thakur, Anamika;
Kumar, Manoj

Publication type:

Article

Data science in unveiling COVID-19 pathogenesis and diagnosis: evolutionary origin to drug repurposing.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 855, doi. 10.1093/bib/bbaa420

By:

Das, Jayanta Kumar;
Tradigo, Giuseppe;
Veltri, Pierangelo;
Guzzi, Pietro H;
Roy, Swarup

Publication type:

Article

Serial co-expression analysis of host factors from SARS-CoV viruses highly converges with former high-throughput screenings and proposes key regulators.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1038, doi. 10.1093/bib/bbaa419

By:

Pérez-Pulido, Antonio J;
Asencio-Cortés, Gualberto;
Brokate-Llanos, Ana M;
Brea-Calvo, Gloria;
Rodríguez-Griñolo, Rosario;
Garzón, Andrés;
Muñoz, Manuel J

Publication type:

Article

Identifying anti-coronavirus peptides by incorporating different negative datasets and imbalanced learning strategies.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1085, doi. 10.1093/bib/bbaa423

By:

Pang, Yuxuan;
Wang, Zhuo;
Jhong, Jhih-Hua;
Lee, Tzong-Yi

Publication type:

Article

Ligand-based approach for predicting drug targets and for virtual screening against COVID-19.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1053, doi. 10.1093/bib/bbaa422

By:

Yang, Yanqing;
Zhu, Zhengdan;
Wang, Xiaoyu;
Zhang, Xinben;
Mu, Kaijie;
Shi, Yulong;
Peng, Cheng;
Xu, Zhijian;
Zhu, Weiliang

Publication type:

Article

Bioinformatics resources facilitate understanding and harnessing clinical research of SARS-CoV-2.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 714, doi. 10.1093/bib/bbaa416

By:

Ahsan, Md Asif;
Liu, Yongjing;
Feng, Cong;
Zhou, Yincong;
Ma, Guangyuan;
Bai, Youhuang;
Chen, Ming

Publication type:

Article

SARS-CoV-2 3D database: understanding the coronavirus proteome and evaluating possible drug targets.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 769, doi. 10.1093/bib/bbaa404

By:

Alsulami, Ali F;
Thomas, Sherine E;
Jamasb, Arian R;
Beaudoin, Christopher A;
Moghul, Ismail;
Bannerman, Bridget;
Copoiu, Liviu;
Vedithi, Sundeep Chaitanya;
Torres, Pedro;
Blundell, Tom L

Publication type:

Article

Transcriptome analysis of cepharanthine against a SARS-CoV-2-related coronavirus.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1378, doi. 10.1093/bib/bbaa387

By:

Li, Shasha;
Liu, Wenli;
Chen, Yangzhen;
Wang, Liqin;
An, Wenlin;
An, Xiaoping;
Song, Lihua;
Tong, Yigang;
Fan, Huahao;
Lu, Chenyang

Publication type:

Article

Bioinformatics resources for SARS-CoV-2 discovery and surveillance.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 631, doi. 10.1093/bib/bbaa386

By:

Hu, Tao;
Li, Juan;
Zhou, Hong;
Li, Cixiu;
Holmes, Edward C;
Shi, Weifeng

Publication type:

Article

SARS-CoV-2 hot-spot mutations are significantly enriched within inverted repeats and CpG island loci.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1338, doi. 10.1093/bib/bbaa385

By:

Goswami, Pratik;
Bartas, Martin;
Lexa, Matej;
Bohálová, Natália;
Volná, Adriana;
Červeň, Jiří;
Červeňová, Veronika;
Pečinka, Petr;
Špunda, Vladimír;
Fojta, Miroslav;
Brázda, Václav

Publication type:

Article

Evolutionary and codon usage preference insights into spike glycoprotein of SARS-CoV-2.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1006, doi. 10.1093/bib/bbaa383

By:

Malik, Yashpal Singh;
Ansari, Mohd Ikram;
Kattoor, Jobin Jose;
Kaushik, Rahul;
Sircar, Shubhankar;
Subbaiyan, Anbazhagan;
Tiwari, Ruchi;
Dhama, Kuldeep;
Ghosh, Souvik;
Tomar, Shailly;
Zhang, Kam Y J

Publication type:

Article

Exploration of natural compounds with anti-SARS-CoV-2 activity via inhibition of SARS-CoV-2 M<sup>pro</sup>.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1361, doi. 10.1093/bib/bbaa382

By:

Bharadwaj, Shiv;
Dubey, Amit;
Yadava, Umesh;
Mishra, Sarad Kumar;
Kang, Sang Gu;
Dwivedi, Vivek Dhar

Publication type:

Article

A comprehensive drug repurposing study for COVID19 treatment: novel putative dihydroorotate dehydrogenase inhibitors show association to serotonin–dopamine receptors.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1023, doi. 10.1093/bib/bbaa379

By:

Berber, Burak;
Doluca, Osman

Publication type:

Article

Identifying the natural polyphenol catechin as a multi-targeted agent against SARS-CoV-2 for the plausible therapy of COVID-19: an integrated computational approach.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1346, doi. 10.1093/bib/bbaa378

By:

Mishra, Chandra Bhushan;
Pandey, Preeti;
Sharma, Ravi Datta;
Malik, Md Zubbair;
Mongre, Raj Kumar;
Lynn, Andrew M;
Prasad, Rajendra;
Jeon, Raok;
Prakash, Amresh

Publication type:

Article

Comprehensive pathway enrichment analysis workflows: COVID-19 case study.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 676, doi. 10.1093/bib/bbaa377

By:

Agapito, Giuseppe;
Pastrello, Chiara;
Jurisica, Igor

Publication type:

Article

Gene expression profiling of SARS-CoV-2 infections reveal distinct primary lung cell and systemic immune infection responses that identify pathways relevant in COVID-19 disease.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1324, doi. 10.1093/bib/bbaa376

By:

Moni, Mohammad Ali;
Quinn, Julian M W;
Sinmaz, Nese;
Summers, Matthew A

Publication type:

Article

The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 742, doi. 10.1093/bib/bbaa362

By:

Waman, Vaishali P;
Sen, Neeladri;
Varadi, Mihaly;
Daina, Antoine;
Wodak, Shoshana J;
Zoete, Vincent;
Velankar, Sameer;
Orengo, Christine

Publication type:

Article

Robots as intelligent assistants to face COVID-19 pandemic.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 823, doi. 10.1093/bib/bbaa361

By:

Seidita, Valeria;
Lanza, Francesco;
Pipitone, Arianna;
Chella, Antonio

Publication type:

Article

A review on viral data sources and search systems for perspective mitigation of COVID-19.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 664, doi. 10.1093/bib/bbaa359

By:

Bernasconi, Anna;
Canakoglu, Arif;
Masseroli, Marco;
Pinoli, Pietro;
Ceri, Stefano

Publication type:

Article

Key residues influencing binding affinities of 2019-nCoV with ACE2 in different species.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 963, doi. 10.1093/bib/bbaa329

By:

Fang, Senbiao;
Zheng, Ruoqian;
Lei, Chuqi;
Wang, Jianxin;
Zheng, Ruiqing;
Li, Min

Publication type:

Article

A review of COVID-19 biomarkers and drug targets: resources and tools.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 701, doi. 10.1093/bib/bbaa328

By:

Caruso, Francesca P;
Scala, Giovanni;
Cerulo, Luigi;
Ceccarelli, Michele

Publication type:

Article

Inferring microenvironmental regulation of gene expression from single-cell RNA sequencing data using scMLnet with an application to COVID-19.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 988, doi. 10.1093/bib/bbaa327

By:

Cheng, Jinyu;
Zhang, Ji;
Wu, Zhongdao;
Sun, Xiaoqiang

Publication type:

Article

A computational toolset for rapid identification of SARS-CoV-2, other viruses and microorganisms from sequencing data.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 924, doi. 10.1093/bib/bbaa231

By:

Chen, Shifu;
He, Changshou;
Li, Yingqiang;
Li, Zhicheng;
Melançon, Charles E

Publication type:

Article

Deep learning approaches for neural decoding across architectures and recording modalities.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1577, doi. 10.1093/bib/bbaa355

By:

Livezey, Jesse A;
Glaser, Joshua I

Publication type:

Article

Drug repurposing for COVID-19: could vitamin C combined with glycyrrhizic acid be at play by the findings of Li et al.'s database-based network pharmacology analysis?

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 1508, doi. 10.1093/bib/bbaa330

By:

Huang, Yu-Xi;
Wang, Wen-Xiao;
Tang, Yu-Ping;
Yue, Shi-Jun

Publication type:

Article