Works matching AU Chain, Patrick

Results: 93

Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains.

Published in:

PLoS Biology, 2014, v. 12, n. 8, p. 1, doi. 10.1371/journal.pbio.1001920

By:

Kyrpides, Nikos C.;
Hugenholtz, Philip;
Eisen, Jonathan A.;
Woyke, Tanja;
Göker, Markus;
Parker, Charles T.;
Amann, Rudolf;
Beck, Brian J.;
Chain, Patrick S. G.;
Chun, Jongsik;
Colwell, Rita R.;
Danchin, Antoine;
Dawyndt, Peter;
Dedeurwaerdere, Tom;
DeLong, Edward F.;
Detter, John C.;
De Vos, Paul;
Donohue, Timothy J.;
Dong, Xiu-Zhu;
Ehrlich, Dusko S.

Publication type:

Article

The Genome of Deep-Sea Vent Chemolithoautotroph Thiomicrospira crunogena XCL-2.

Published in:

PLoS Biology, 2006, v. 4, n. 12, p. 2196, doi. 10.1371/journal.pbio.0040383

By:

Scott, Kathleen M.;
Sievert, Stefan M.;
Abril, Fereniki N.;
Ball, Lois A.;
Barrett, Chantell J.;
Blake, Rodrigo A.;
Boller, Amanda J.;
Chain, Patrick S. G.;
Clark, Justine A.;
Davis, Carisa R.;
Detter, Chris;
Do, Kimberly F.;
Dobrinski, Kimberly P.;
Faza, Brandon I.;
Fitzpatrick, Kelly A.;
Freyermuth, Sharyn K.;
Harmer, Tara L.;
Hauser, Loren J.;
Hügler, Michael;
Kerfeld, Cheryl A.

Publication type:

Article

Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0041-x

By:

Shetty, Ameesha R.;
de Gannes, Vidya;
Obi, Chioma C.;
Lucas, Susan;
Lapidus, Alla;
Jan-Fang Cheng;
Goodwin, Lynne A.;
Pitluck, Samuel;
Peters, Linda;
Mikhailova, Natalia;
Teshima, Hazuki;
Han, Cliff;
Tapia, Roxanne;
Land, Miriam;
Hauser, Loren J.;
Kyrpides, Nikos;
Ivanova, Natalia;
Pagani, Ioanna;
Chain, Patrick S. G.;
Denef, Vincent J

Publication type:

Article

Genome sequence of Ensifer medicae strain WSM1115; an acid-tolerant Medicago-nodulating microsymbiont from Samothraki, Greece.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 514, doi. 10.4056/sigs.4938652

By:

Reeve, Wayne;
Ballard, Ross;
Howieson, John;
Drew, Elizabeth;
Tian, Rui;
Bräu, Lambert;
Munk, Christine;
Davenport, Karen;
Chain, Patrick;
Goodwin, Lynne;
Pagani, Ioanna;
Huntemann, Marcel;
Mavrommatis, Konstantinos;
Pati, Amrita;
Markowitz, Victor;
Ivanova, Natalia;
Woyke, Tanja;
Kyrpides, Nikos

Publication type:

Article

Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum caboxydivorans as a later synonym of Desulfotomaculum nigrificans.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 655, doi. 10.4056/sigs.4718645

By:

Visser, Michael;
Parshina, Sofiya;
Alves, Joana;
Sousa, Diana;
Pereira, Inês;
Muyzer, Gerard;
Kuever, Jan;
Lebedinsky, Alexander;
Koehorst, Jasper;
Worm, Petra;
Plugge, Caroline;
Schaap, Peter;
Goodwin, Lynne;
Lapidus, Alla;
Kyrpides, Nikos;
Detter, Janine;
Woyke, Tanja;
Chain, Patrick;
Davenport, Karen;
Spring, Stefan

Publication type:

Article

Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252 isolated from marine sediment.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 687, doi. 10.4056/sigs.3828824

By:

Breider, Sven;
Teshima, Hazuki;
Petersen, Jörn;
Chertkov, Olga;
Dalingault, Hajnalka;
Chen, Amy;
Pati, Amrita;
Ivanova, Natalia;
Lapidus, Alla;
Goodwin, Lynne;
Chain, Patrick;
Detter, John;
Rohde, Manfred;
Tindall, Brian;
Kyrpides, Nikos;
Woyke, Tanja;
Simon, Meinhard;
Göker, Markus;
Klenk, Hans-Peter;
Brinkhoff, Thorsten

Publication type:

Article

Complete Genome sequence of Burkholderia phymatum STM815, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 763, doi. 10.4056/sigs.4861021

By:

Moulin, Lionel;
Klonowska, Agnieszka;
Caroline, Bournaud;
Booth, Kristina;
Vriezen, Jan;
Melkonian, Rémy;
James, Euan;
Young, J.;
Bena, Gilles;
Hauser, Loren;
Land, Miriam;
Kyrpides, Nikos;
Bruce, David;
Chain, Patrick;
Copeland, Alex;
Pitluck, Sam;
Woyke, Tanja;
Lizotte-Waniewski, Michelle;
Bristow, Jim;
Riley, Margaret

Publication type:

Article

Genome analysis of Desulfotomaculum gibsoniae strain Groll a highly versatile Gram-positive sulfate-reducing bacterium.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 821, doi. 10.4056/sigs.5209235

By:

Kuever, Jan;
Visser, Michael;
Loeffler, Claudia;
Boll, Matthias;
Worm, Petra;
Sousa, Diana;
Plugge, Caroline;
Schaap, Peter;
Muyzer, Gerard;
Pereira, Ines;
Parshina, Sofiya;
Goodwin, Lynne;
Kyrpides, Nikos;
Detter, Janine;
Woyke, Tanja;
Chain, Patrick;
Davenport, Karen;
Rohde, Manfred;
Spring, Stefan;
Klenk, Hans-Peter

Publication type:

Article

Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI943.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 232, doi. 10.4056/sigs.4478252

By:

Reeve, Wayne;
Drew, Elizabeth;
Ballard, Ross;
Melino, Vanessa;
Tian, Rui;
Meyer, Sofie;
Brau, Lambert;
Ninawi, Mohamed;
Daligault, Hajnalka;
Davenport, Karen;
Erkkila, Tracy;
Goodwin, Lynne;
Gu, Wei;
Munk, Christine;
Teshima, Hazuki;
Xu, Yan;
Chain, Patrick;
Kyrpides, Nikos

Publication type:

Article

Genome sequence of Phaeobacter inhibens type strain (T5), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 334, doi. 10.4056/sigs.4448212

By:

Dogs, Marco;
Voget, Sonja;
Teshima, Hazuki;
Petersen, Jörn;
Davenport, Karen;
Dalingault, Hajnalka;
Chen, Amy;
Pati, Amrita;
Ivanova, Natalia;
Goodwin, Lynne;
Chain, Patrick;
Detter, John;
Standfest, Sonja;
Rohde, Manfred;
Gronow, Sabine;
Kyrpides, Nikos;
Woyke, Tanja;
Simon, Meinhard;
Klenk, Hans-Peter;
Göker, Markus

Publication type:

Article

Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 325, doi. 10.4056/sigs.3797438

By:

Galardini, Marco;
Bazzicalupo, Marco;
Biondi, Emanuele;
Brambilla, Eveline;
Brilli, Matteo;
Bruce, David;
Chain, Patrick;
Chen, Amy;
Daligault, Hajnalka;
Davenport, Karen;
Deshpande, Shweta;
Detter, John;
Goodwin, Lynne;
Han, Cliff;
Han, James;
Huntemann, Marcel;
Ivanova, Natalia;
Klenk, Hans-Peter;
Kyrpides, Nikos;
Markowitz, Victor

Publication type:

Article

Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 220, doi. 10.4056/sigs.4468250

By:

Reeve, Wayne;
Drew, Elizabeth;
Ballard, Ross;
Melino, Vanessa;
Tian, Rui;
Meyer, Sofie;
Brau, Lambert;
Ninawi, Mohamed;
Teshima, Hazuki;
Goodwin, Lynne;
Chain, Patrick;
Liolios, Konstantinos;
Pati, Amrita;
Mavromatis, Konstantinos;
Ivanova, Natalia;
Markowitz, Victor;
Woyke, Tanja;
Kyrpides, Nikos

Publication type:

Article

Complete genome sequence of the marine methyl-halide oxidizing Leisingera methylohalidivorans type strain (DSM 14336), a representative of the Roseobacter clade.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 128, doi. 10.4056/sigs.4297965

By:

Buddruhs, Nora;
Chertkov, Olga;
Petersen, Jörn;
Fiebig, Anne;
Chen, Amy;
Pati, Amrita;
Ivanova, Natalia;
Lapidus, Alla;
Goodwin, Lynne;
Chain, Patrick;
Detter, John;
Gronow, Sabine;
Kyrpides, Nikos;
Woyke, Tanja;
Göker, Markus;
Brinkhoff, Thorsten;
Klenk, Hans-Peter

Publication type:

Article

Genome sequence of Phaeobacter daeponensis type strain (DSM 23529), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis.

Published in:

Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 142, doi. 10.4056/sigs.4287962

By:

Dogs, Marco;
Teshima, Hazuki;
Petersen, Jörn;
Fiebig, Anne;
Chertkov, Olga;
Dalingault, Hajnalka;
Chen, Amy;
Pati, Amrita;
Goodwin, Lynne;
Chain, Patrick;
Detter, John;
Ivanova, Natalia;
Lapidus, Alla;
Rohde, Manfred;
Gronow, Sabine;
Kyrpides, Nikos;
Woyke, Tanja;
Simon, Meinhard;
Göker, Markus;
Klenk, Hans-Peter

Publication type:

Article

Genome sequence of the Leisingera aquimarina type strain (DSM 24565), a member of the marine Roseobacter clade rich in extrachromosomal elements.

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 3, p. 389, doi. 10.4056/sigs.3858183

By:

Riedel, Thomas;
Teshima, Hazuki;
Petersen, Jörn;
Fiebig, Anne;
Davenport, Karen;
Daligault, Hajnalka;
Erkkila, Tracy;
Gu, Wei;
Munk, Christine;
Xu, Yan;
Chen, Amy;
Pati, Amrita;
Ivanova, Natalia;
Goodwin, Lynne;
Chain, Patrick;
Detter, John;
Rohde, Manfred;
Gronow, Sabine;
Kyrpides, Nikos;
Woyke, Tanja

Publication type:

Article

Genome sequence of Phaeobacter caeruleus type strain (DSM 24564), a surface-associated member of the marine Roseobacter clade.

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 3, p. 403, doi. 10.4056/sigs.3927626

By:

Beyersmann, Paul;
Chertkov, Olga;
Petersen, Jörn;
Fiebig, Anne;
Chen, Amy;
Pati, Amrita;
Ivanova, Natalia;
Lapidus, Alla;
Goodwin, Lynne;
Chain, Patrick;
Detter, John;
Rohde, Manfred;
Gronow, Sabine;
Kyrpides, Nikos;
Woyke, Tanja;
Simon, Meinhard;
Göker, Markus;
Klenk, Hans-Peter;
Brinkhoff, Thorsten

Publication type:

Article

Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4.

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 3, p. 441, doi. 10.4056/sigs.4027757

By:

Neupane, Saraswoti;
Goodwin, Lynne;
Högberg, Nils;
Kyrpides, Nikos;
Alström, Sadhna;
Bruce, David;
Quintana, Beverly;
Munk, Christine;
Daligault, Hajnalka;
Teshima, Hazuki;
Davenport, Karen;
Reitenga, Krista;
Green, Lance;
Chain, Patrick;
Erkkila, Tracy;
Gu, Wei;
Zhang, Xiaojing;
Xu, Yan;
Kunde, Yulia;
Chertkov, Olga

Publication type:

Article

Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566.

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 3, p. 450, doi. 10.4056/sigs.383362

By:

Freese, Heike;
Dalingault, Hajnalka;
Petersen, Jörn;
Pradella, Silke;
Davenport, Karen;
Teshima, Hazuki;
Chen, Amy;
Pati, Amrita;
Ivanova, Natalia;
Goodwin, Lynne;
Chain, Patrick;
Detter, John;
Rohde, Manfred;
Gronow, Sabine;
Kyrpides, Nikos;
Woyke, Tanja;
Brinkhoff, Thorsten;
Göker, Markus;
Overmann, Jörg;
Klenk, Hans-Peter

Publication type:

Article

Genome analysis of Desulfotomaculum kuznetsovii strain 17 reveals a physiological similarity with Pelotomaculum thermopropionicum strain SI.

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 69, doi. 10.4056/sigs.3627141

By:

Visser, Michael;
Worm, Petra;
Muyzer, Gerard;
Pereira, Inês;
Schaap, Peter;
Plugge, Caroline;
Kuever, Jan;
Parshina, Sofiya;
Nazina, Tamara;
Ivanova, Anna;
Bernier-Latmani, Rizlan;
Goodwin, Lynne;
Kyrpides, Nikos;
Woyke, Tanja;
Chain, Patrick;
Davenport, Karen;
Spring, Stefan;
Klenk, Hans-Peter;
Stams, Alfons

Publication type:

Article

Islands Within Islands: Bacterial Phylogenetic Structure and Consortia in Hawaiian Lava Caves and Fumaroles.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.934708

By:

Prescott, Rebecca D.;
Zamkovaya, Tatyana;
Donachie, Stuart P.;
Northup, Diana E.;
Medley, Joseph J.;
Monsalve, Natalia;
Saw, Jimmy H.;
Decho, Alan W.;
Chain, Patrick S. G.;
Boston, Penelope J.

Publication type:

Article

Islands Within Islands: Bacterial Phylogenetic Structure and Consortia in Hawaiian Lava Caves and Fumaroles.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.934708

By:

Prescott, Rebecca D.;
Zamkovaya, Tatyana;
Donachie, Stuart P.;
Northup, Diana E.;
Medley, Joseph J.;
Monsalve, Natalia;
Saw, Jimmy H.;
Decho, Alan W.;
Chain, Patrick S. G.;
Boston, Penelope J.

Publication type:

Article

Comparative genomic and phenotypic characterization of invasive non-typhoidal Salmonella isolates from Siaya, Kenya.

Published in:

PLoS Neglected Tropical Diseases, 2021, v. 15, n. 2, p. 1, doi. 10.1371/journal.pntd.0008991

By:

Kubicek-Sutherland, Jessica Z.;
Xie, Gary;
Shakya, Migun;
Dighe, Priya K.;
Jacobs, Lindsey L.;
Daligault, Hajnalka;
Davenport, Karen;
Stromberg, Loreen R.;
Stromberg, Zachary R.;
Cheng, Qiuying;
Kempaiah, Prakasha;
Ong'echa, John Michael;
Otieno, Vincent;
Raballah, Evans;
Anyona, Samuel;
Ouma, Collins;
Chain, Patrick S. G.;
Perkins, Douglas J.;
Mukundan, Harshini;
McMahon, Benjamin H.

Publication type:

Article

Precision Medicine and Precision Public Health in the Era of Pathogen Next-Generation Sequencing.

Published in:

2020

By:

Leguia, Mariana;
Vila-Sanjurjo, Anton;
Chain, Patrick S G;
Berry, Irina Maljkovic;
Jarman, Richard G;
Pollett, Simon

Publication type:

research

Novel Insights Into the Spread of Enteric Pathogens Using Genomics.

Published in:

2020

By:

Domman, Daryl;
Ruis, Christopher;
Dorman, Matthew J;
Shakya, Migun;
Chain, Patrick S G

Publication type:

journal article

An applications-focused review of comparative genomics tools: Capabilities, limitations and future challenges.

Published in:

Briefings in Bioinformatics, 2003, v. 4, n. 2, p. 105, doi. 10.1093/bib/4.2.105

By:

Chain, Patrick;
Kurtz, Stefan;
Ohlebusch, Enno;
Slezak, Tom

Publication type:

Article

Advances and Challenges in Metatranscriptomic Analysis.

Published in:

Frontiers in Genetics, 2019, p. 1, doi. 10.3389/fgene.2019.00904

By:

Shakya, Migun;
Lo, Chien-Chi;
Chain, Patrick S. G.

Publication type:

Article

Importance of appropriate genome information for the design of mating type primers in black and yellow morel populations.

Published in:

IMA Fungus, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s43008-022-00101-6

By:

Cravero, Melissa;
Robinson, Aaron J.;
Hilpisch, Patrick;
Chain, Patrick S.;
Bindschedler, Saskia;
Junier, Pilar

Publication type:

Article

Whole-Genome Comparative Analysis of Two Carbapenem-Resistant ST-258 Klebsiella pneumoniae Strains Isolated during a North-Eastern Ohio Outbreak: Differences within the High Heterogeneity Zones.

Published in:

Genome Biology & Evolution, 2016, v. 8, n. 6, p. 2036, doi. 10.1093/gbe/evw135

By:

Ramirez, María Soledad;
Gang Xie;
Traglia, German M.;
Johnson, Shannon L.;
Davenport, Karen W.;
Van Duin, David;
Ramazani, Azam;
Perez, Federico;
Jacobs, Michael R.;
Sherratt, David J.;
Bonomo, Robert A.;
Chain, Patrick S. G.;
Tolmasky, Marcelo E.

Publication type:

Article

The Complete Plastid Genome Sequence of the Secondarily Nonphotosynthetic Alga Cryptomonas paramecium: Reduction, Compaction, and Accelerated Evolutionary Rate.

Published in:

Genome Biology & Evolution, 2009, v. 1, p. 439, doi. 10.1093/gbe/evp047

By:

Donaher, Natalie;
Tanifuji, Goro;
Onodera, Naoko T.;
Malfatti, Stephanie A.;
Chain, Patrick S. G.;
Hara, Yoshiaki;
Archibald, John M.

Publication type:

Article

Comparative genomics of enterohemorrhagic Escherichia coli O145:H28 demonstrates a common evolutionary lineage with Escherichia coli O157:H7.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-17

By:

Cooper, Kerry K.;
Mandrell, Robert E.;
Louie, Jacqueline W.;
Korlach, Jonas;
Clark, Tyson A.;
Parker, Craig T.;
Huynh, Steven;
Chain, Patrick S.;
Ahmed, Sanaa;
Carter, Michelle Qiu

Publication type:

Article

Metabolic versatility of Caldarchaeales from geothermal features of Hawai’i and Chile as revealed by five metagenome-assembled genomes.

Published in:

Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1216591

By:

Balbay, Manolya Gul;
Shlafstein, Maximillian D.;
Cockell, Charles;
Cady, Sherry L.;
Prescott, Rebecca D.;
Lim, Darlene S. S.;
Chain, Patrick S. G.;
Donachie, Stuart P.;
Decho, Alan W.;
Saw, Jimmy H.

Publication type:

Article

Functional and Structural Analysis of a Highly-Expressed Yersinia pestis Small RNA following Infection of Cultured Macrophages.

Published in:

PLoS ONE, 2016, v. 11, n. 12, p. 1, doi. 10.1371/journal.pone.0168915

By:

Li, Nan;
Hennelly, Scott P.;
Stubben, Chris J.;
Micheva-Viteva, Sofiya;
Hu, Bin;
Shou, Yulin;
Vuyisich, Momchilo;
Tung, Chang-Shung;
Chain, Patrick S.;
Sanbonmatsu, Karissa Y.;
Hong-Geller, Elizabeth

Publication type:

Article

Molecular Dissection of Induced Platinum Resistance through Functional and Gene Expression Analysis in a Cell Culture Model of Bladder Cancer.

Published in:

PLoS ONE, 2016, v. 11, n. 1, p. 1, doi. 10.1371/journal.pone.0146256

By:

Wang, Sisi;
Zhang, Hongyong;
Scharadin, Tiffany M.;
Zimmermann, Maike;
Hu, Bin;
Pan, Amy Wang;
Vinall, Ruth;
Lin, Tzu-yin;
Cimino, George;
Chain, Patrick;
Vuyisich, Momchilo;
Gleasner, Cheryl;
Mcmurry, Kim;
Malfatti, Michael;
Turteltaub, Kenneth;
de Vere White, Ralph;
Pan, Chong-xian;
Henderson, Paul T.

Publication type:

Article

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 9, p. 1715, doi. 10.1038/ismej.2012.59

By:

Mason, Olivia U;
Hazen, Terry C;
Borglin, Sharon;
Chain, Patrick S G;
Dubinsky, Eric A;
Fortney, Julian L;
Han, James;
Holman, Hoi-Ying N;
Hultman, Jenni;
Lamendella, Regina;
Mackelprang, Rachel;
Malfatti, Stephanie;
Tom, Lauren M;
Tringe, Susannah G;
Woyke, Tanja;
Zhou, Jizhong;
Rubin, Edward M;
Jansson, Janet K

Publication type:

Article

Saliva microbiomes distinguish caries-active from healthy human populations.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 1, p. 1, doi. 10.1038/ismej.2011.71

By:

Yang, Fang;
Zeng, Xiaowei;
Ning, Kang;
Liu, Kuan-Liang;
Lo, Chien-Chi;
Wang, Wei;
Chen, Jie;
Wang, Dongmei;
Huang, Ranran;
Chang, Xingzhi;
Chain, Patrick S;
Xie, Gary;
Ling, Junqi;
Xu, Jian

Publication type:

Article

The complete genome sequence of Francisella tularensis, the causative agent of tularemia.

Published in:

Nature Genetics, 2005, v. 37, n. 2, p. 153, doi. 10.1038/ng1499

By:

Larsson, Pär;
Oyston, Petra C. F.;
Chain, Patrick;
Chu, May C.;
Duffield, Melanie;
Fuxelius, Hans-Henrik;
Garcia, Emilio;
Hälltorp, Greger;
Johansson, Daniel;
Isherwood, Karen E.;
Karp, Peter D.;
Larsson, Eva;
Liu, Ying;
Michell, Stephen;
Prior, Joann;
Prior, Richard;
Malfatti, Stephanie;
Sjöstedt, Anders;
Svensson, Kerstin;
Thompson, Nick

Publication type:

Article

A new species of true morel from Switzerland: Morchella helvetica, sp. nov.

Published in:

Mycologia, 2024, v. 116, n. 6, p. 1101, doi. 10.1080/00275514.2024.2397932

By:

Cravero, Melissa;
Bonito, Gregory;
Chain, Patrick S.;
Bindschedler, Saskia;
Junier, Pilar

Publication type:

Article

Comparative genomics of Mollicutes-related endobacteria supports a late invasion into Mucoromycota fungi.

Published in:

Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-05299-8

By:

Longley, Reid;
Robinson, Aaron;
Liber, Julian A.;
Bryson, Abigail E.;
Morales, Demosthenes P.;
LaButti, Kurt;
Riley, Robert;
Mondo, Stephen J.;
Kuo, Alan;
Yoshinaga, Yuko;
Daum, Chris;
Barry, Kerrie;
Grigoriev, Igor V.;
Desirò, Alessandro;
Chain, Patrick S. G.;
Bonito, Gregory

Publication type:

Article

Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep06480

By:

Scholz, Matthew;
Chien-Chi Lo;
Chain, Patrick S. G.

Publication type:

Article

Fabricated devices for performing bacterial-fungal interaction experiments across scales.

Published in:

Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1380199

By:

Kelliher, Julia M.;
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Robinson, Aaron J.;
Longley, Reid;
Hanson, Buck T.;
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Junier, Pilar;
Chain, Patrick S. G.

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Pathogen comparative genomics in the next-generation sequencing era: genome alignments, pangenomics and metagenomics.

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Briefings in Functional Genomics, 2011, v. 10, n. 6, p. 322

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Hu, Bin;
Xie, Gary;
Lo, Chien-Chi;
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Chain, Patrick S. G.

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Targeted and shotgun metagenomic approaches provide different descriptions of dryland soil microbial communities in a manipulated field study.

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Environmental Microbiology Reports, 2012, v. 4, n. 2, p. 248, doi. 10.1111/j.1758-2229.2012.00328.x

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Steven, Blaire;
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Kuske, Cheryl R.

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The evolution of a super-swarm of foot-and-mouth disease virus in cattle.

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PLoS ONE, 2019, v. 14, n. 4, p. 1, doi. 10.1371/journal.pone.0210847

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Arzt, Jonathan;
Fish, Ian;
Pauszek, Steven J.;
Johnson, Shannon L.;
Chain, Patrick S.;
Rai, Devendra K.;
Rieder, Elizabeth;
Goldberg, Tony L.;
Rodriguez, Luis L.;
Stenfeldt, Carolina

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The endohyphal microbiome: current progress and challenges for scaling down integrative multi-omic microbiome research.

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Microbiome, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40168-023-01634-7

By:

Kelliher, Julia M.;
Robinson, Aaron J.;
Longley, Reid;
Johnson, Leah Y. D.;
Hanson, Buck T.;
Morales, Demosthenes P.;
Cailleau, Guillaume;
Junier, Pilar;
Bonito, Gregory;
Chain, Patrick S. G.

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Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life.

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Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-58356-1

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Shakya, Migun;
Ahmed, Sanaa A.;
Davenport, Karen W.;
Flynn, Mark C.;
Lo, Chien-Chi;
Chain, Patrick S. G.

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Uncovering the Core Microbiome and Distribution of Palmerolide in Synoicum adareanum Across the Anvers Island Archipelago, Antarctica.

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Marine Drugs, 2020, v. 18, p. 298, doi. 10.3390/md18060298

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Murray, Alison E.;
Avalon, Nicole E.;
Bishop, Lucas;
Davenport, Karen W.;
Delage, Erwan;
Dichosa, Armand E.K.;
Eveillard, Damien;
Higham, Mary L.;
Kokkaliari, Sofia;
Lo, Chien-Chi;
Riesenfeld, Christian S.;
Young, Ryan M.;
Chain, Patrick S.G.;
Baker, Bill J.

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Impact of Oxalic Acid Consumption and pH on the In Vitro Biological Control of Oxalogenic Phytopathogen Sclerotinia sclerotiorum.

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Journal of Fungi, 2025, v. 11, n. 3, p. 191, doi. 10.3390/jof11030191

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Estoppey, Aislinn;
Vallat-Michel, Armelle;
Chain, Patrick S.;
Bindschedler, Saskia;
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Comparative metagenomics reveals impact of contaminants on groundwater microbiomes.

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Frontiers in Microbiology, 2015, v. 6, p. 1, doi. 10.3389/fmicb.2015.01205

By:

Hemme, Christopher L.;
Qichao Tu;
Zhou Shi;
Yujia Qin;
Weimin Gao;
Ye Deng;
Van Nostrand, Joy D.;
Liyou Wu;
Zhili He;
Chain, Patrick S. G.;
Tringe, Susannah G.;
Fields, Matthew W.;
Rubin, Edward M.;
Tiedje, James M.;
Hazen, Terry C.;
Arkin, Adam P.;
Jizhong Zhou;
Van Der Meer, Jan Roelof;
Prithiviraj, Bharath;
Drewniak, Lukasz

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Cryptosporulation in Kurthia spp. forces a rethinking of asporogenesis in Firmicutes.

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Environmental Microbiology, 2022, v. 24, n. 12, p. 6320, doi. 10.1111/1462-2920.16145

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Fatton, Mathilda;
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Junier, Thomas;
Cailleau, Guillaume;
Berge, Matthieu;
Poppleton, Daniel;
Blum, Thorsten B.;
Kaminek, Marek;
Odriozola, Adolfo;
Blom, Jochen;
Johnson, Shannon L.;
Abrahams, Jan Pieter;
Chain, Patrick S.;
Gribaldo, Simonetta;
Tocheva, Elitza I.;
Zuber, Benoît;
Viollier, Patrick H.;
Junier, Pilar

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Metagenomic investigation of the geologically unique Hellenic Volcanic Arc reveals a distinctive ecosystem with unexpected physiology.

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Environmental Microbiology, 2016, v. 18, n. 4, p. 1122, doi. 10.1111/1462-2920.13095

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Oulas, Anastasis;
Polymenakou, Paraskevi N.;
Seshadri, Rekha;
Tripp, H. James;
Mandalakis, Manolis;
Paez ‐ Espino, A. David;
Pati, Amrita;
Chain, Patrick;
Nomikou, Paraskevi;
Carey, Steven;
Kilias, Stephanos;
Christakis, Christos;
Kotoulas, Georgios;
Magoulas, Antonios;
Ivanova, Natalia N.;
Kyrpides, Nikos C.

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