KPNA3 regulates histone locus body formation by modulating condensation and nuclear import of NPAT.

Shui Bo Xu; Xiu Kui Gao; Hao Di Liang; Xiao Xia Cong; XuQi Chen; Wen Kai Zou; Jia Li Tao; Zhao Yuan Pan; Jiao Zhao; Man Huang; Zhang Bao; Yi Ting Zhou; Li Ling Zheng

The histone locus body (HLB) is a membraneless organelle that determines the transcription of replication-dependent histones. However, the mechanisms underlying the appropriate formation of the HLB in the nucleus but not in the cytoplasm remain unknown. HLB formation is dependent on the scaffold protein NPAT. We identify KPNA3 as a specific importin that drives the nuclear import of NPAT by binding to the nuclear localization signal (NLS) sequence. NPAT undergoes phase separation, which is inhibited by KPNA3-mediated impairment of self-association. In this, a C-terminal self-interaction facilitator (C-SIF) motif, proximal to the NLS, binds the middle 431-1,030 sequence to mediate the self-association of NPAT. Mechanistically, the anchoring of KPNA3 to the NPAT-NLS sterically blocks C-SIF motif-dependent NPAT self-association. This leads to the suppression of aberrant NPAT condensation in the cytoplasm. Collectively, our study reveals a previously unappreciated role of KPNA3 in modulating HLB formation and delineates a steric hindrance mechanism that prevents inappropriate cytoplasmic NPAT condensation.

STERIC hindrance; PHASE separation; SCAFFOLD proteins; GENETIC transcription; CONDENSATION

Journal of Cell Biology, 2025, Vol 224, Issue 1, p1

0021-9525

Academic Journal

10.1083/jcb.202401036