Works matching DE "CATALYTIC RNA"

Results: 1077

Ribozyme crosses chirality borders.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 1, p. 36, doi. 10.1038/nsmb.2947

By:

Dellisanti, Cosma

Publication type:

Article

Evidence for a group II intron-like catalytic triplex in the spliceosome.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 5, p. 464, doi. 10.1038/nsmb.2815

By:

Fica, Sebastian M;
Mefford, Melissa A;
Piccirilli, Joseph A;
Staley, Jonathan P

Publication type:

Article

Crystal structure of a group II intron in the pre-catalytic state.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 5, p. 555, doi. 10.1038/nsmb.2270

By:

Chan, Russell T;
Robart, Aaron R;
Rajashankar, Kanagalaghatta R;
Pyle, Anna Marie;
Toor, Navtej

Publication type:

Article

The glmS riboswitch integrates signals from activating and inhibitory metabolites in vivo.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 3, p. 359, doi. 10.1038/nsmb.1989

By:

Watson, Peter Y.;
Fedor, Martha J.

Publication type:

Article

Alternate rRNA secondary structures as regulators of translation.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 2, p. 169, doi. 10.1038/nsmb.1962

By:

Shu Feng;
Heng Li;
Jing Zhao;
Pervushin, Konstantin;
Lowenhaupt, Ky;
Schwartz, Thomas U.;
Dröge, Peter

Publication type:

Article

The chromosomal association of condensin II is regulated by a noncatalytic function of PP2A.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 12, p. 1302, doi. 10.1038/nsmb.1708

By:

Takemoto, Ai;
Maeshima, Kazuhiro;
Ikehara, Tsuyoshi;
Yamaguchi, Kazumitsu;
Murayama, Akiko;
Imamura, Shihoko;
Imamoto, Naoko;
Yokoyama, Shigeyuki;
Hirano, Tatsuya;
Watanabe, Yoshinori;
Hanaoka, Fumio;
Yanagisawa, Junn;
Kimura, Keiji

Publication type:

Article

Structural insights into RNA processing by the human RISC-loading complex.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 11, p. 1148, doi. 10.1038/nsmb.1673

By:

Wang, Hong-Wei;
Noland, Cameron;
Siridechadilok, Bunpote;
Taylor, David W;
Ma, Enbo;
Felderer, Karin;
Doudna, Jennifer A;
Nogales, Eva

Publication type:

Article

Fast ribozyme cleavage releases transcripts from RNA polymerase II and aborts co-transcriptional pre-mRNA processing.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 9, p. 916, doi. 10.1038/nsmb.1652

By:

Fong, Nova;
Öhman, Marie;
Bentley, David L.

Publication type:

Article

Wrong PH for RNA degradation.

Published in:

Nature Structural & Molecular Biology, 2007, v. 14, n. 1, p. 5, doi. 10.1038/nsmb0107-5

By:

Wahle, Elmar

Publication type:

Article

A folding control element for tertiary collapse of a group II intron ribozyme.

Published in:

Nature Structural & Molecular Biology, 2007, v. 14, n. 1, p. 37, doi. 10.1038/nsmb1181

By:

Waldsich, Christina;
Pyle, Anna Marie

Publication type:

Article

Backbone and nucleobase contacts to glucosamine-6-phosphate in the glmS ribozyme.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 6, p. 517, doi. 10.1038/nsmb1094

By:

Jansen, Joshua A;
McCarthy, Tom J;
Soukup, Garrett A;
Soukup, Juliane K

Publication type:

Article

Compact and ordered collapse of randomly generated RNA sequences.

Published in:

Nature Structural & Molecular Biology, 2005, v. 12, n. 12, p. 1130, doi. 10.1038/nsmb1014

By:

Schultes, Erik A.;
Spasic, Alexander;
Mohanty, Udayan;
Bartel, David P.

Publication type:

Article

New catalytic structures from an existing ribozyme.

Published in:

Nature Structural & Molecular Biology, 2005, v. 12, n. 11, p. 994, doi. 10.1038/nsmb1003

By:

Curtis, Edward A.;
Bartel, David P.

Publication type:

Article

RNA Catalysis in Frozen Solutions.

Published in:

Doklady Biochemistry & Biophysics, 2005, v. 402, n. 1-6, p. 207, doi. 10.1007/s10628-005-0072-0

By:

Vlassov, A. V.;
Johnston, B. H.;
Landweber, L. F.;
Kazakov, S. A.

Publication type:

Article

Synthesis of Bisubstrate Analogues for RNA Methylation Studies using two Transition‐Metal‐Catalyzed Reactions.

Published in:

Chemistry - A European Journal, 2023, v. 29, n. 44, p. 1, doi. 10.1002/chem.202301134

By:

Coelho, Dylan;
Le Corre, Laurent;
Bartosik, Karolina;
Iannazzo, Laura;
Braud, Emmanuelle;
Ethève‐Quelquejeu, Mélanie

Publication type:

Article

RNA‐Catalyzed RNA Ligation within Prebiotically Plausible Model Protocells.

Published in:

Chemistry - A European Journal, 2023, v. 29, n. 43, p. 1, doi. 10.1002/chem.202301376

By:

DasGupta, Saurja;
Zhang, Stephanie J.;
Smela, Merrick P.;
Szostak, Jack W.

Publication type:

Article

Boronic Acid Assisted Self‐Assembly of Functional RNAs.

Published in:

Chemistry - A European Journal, 2023, v. 29, n. 35, p. 1, doi. 10.1002/chem.202300196

By:

Lelièvre‐Büttner, Amandine;
Schnarr, Theodor;
Debiais, Mégane;
Smietana, Michael;
Müller, Sabine

Publication type:

Article

Characterization of the glmS Ribozymes from Listeria Monocytogenes and Clostridium Difficile.

Published in:

Chemistry - A European Journal, 2023, v. 29, n. 3, p. 1, doi. 10.1002/chem.202202376

By:

Esser, Anna;
Mayer, Günter

Publication type:

Article

Pushing the Limits of Nucleic Acid Function.

Published in:

Chemistry - A European Journal, 2022, v. 28, n. 71, p. 1, doi. 10.1002/chem.202201737

By:

Curtis, Edward A.

Publication type:

Article

High-Throughput Mutational Analysis of a Twister Ribozyme.

Published in:

Angewandte Chemie, 2016, v. 128, n. 35, p. 10510, doi. 10.1002/ange.201605470

By:

Kobori, Shungo;
Yokobayashi, Yohei

Publication type:

Article

A Mini-Twister Variant and Impact of Residues/Cations on the Phosphodiester Cleavage of this Ribozyme Class.

Published in:

Angewandte Chemie, 2015, v. 127, n. 50, p. 15343, doi. 10.1002/ange.201506601

By:

Košutić, Marija;
Neuner, Sandro;
Aiming Ren;
Flür, Sara;
Wunderlich, Christoph;
Mairhofer, Elisabeth;
Vucurovic, Nikola;
Seikowski, Jan;
Breuker, Kathrin;
Höbartner, Claudia;
Patel, Dinshaw J.;
Kreutz, Christoph;
Micura, Ronald

Publication type:

Article

Ribozymes: Analytical Solution of the One-substrate, Two-intermediate Reversible Scheme for Enzyme Reactions.

Published in:

Journal of Biological Physics, 2006, v. 32, n. 6, p. 473, doi. 10.1007/s10867-006-9030-z

By:

Toti, Paolo;
Sbordone, Ludovico;
Sbordone, Carolina;
Bauer, Carlo

Publication type:

Article

Improved RNA isolation from Laminaria japonica Aresch (Laminariaceae, Phaeophyta).

Published in:

Journal of Applied Phycology, 2009, v. 21, n. 2, p. 233

By:

Xiuliang Wang;
Delin Duan

Publication type:

Article

Inhibition of type I procollagen production by tRNA<sup>Val</sup> CTE-HSP47 ribozyme.

Published in:

Journal of Gene Medicine, 2003, v. 5, n. 9, p. 784, doi. 10.1002/jgm.404

By:

Seiya Hagiwara;
Kiminori Nakamura;
Hirofumi Hamada;
Katsunori Sasaki;
Yoshinori Ito;
Kageaki Kuribayashi;
Tsutomu Sato;
Yasushi Sato;
Minoru Takahashi;
Katsuhisa Kogawa;
Junji Kato;
Takeshi Terui;
Tetsuji Takayama;
Takuya Matsunaga;
Kazunari Taira;
Yoshiro Niitsu

Publication type:

Article

Thermodynamic analysis of Zα domain-nucleic acid interactions.

Published in:

Biochemical Journal, 2022, v. 479, n. 16, p. 1727, doi. 10.1042/BCJ20220200

By:

Srinivasan, Bharath;
Kuś, Krzysztof;
Athanasiadis, Alekos

Publication type:

Article

MetalionRNA: computational predictor of metal-binding sites in RNA structures.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 198, doi. 10.1093/bioinformatics/btr636

By:

Philips, Anna;
Milanowska, Kaja;
Lach, Grzegorz;
Boniecki, Michal;
Rother, Kristian;
Bujnicki, Janusz M.

Publication type:

Article

Classification of ncRNAs using position and size information in deep sequencing data.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i426, doi. 10.1093/bioinformatics/btq363

By:

Erhard, Florian;
Zimmer, Ralf

Publication type:

Article

Viroids and Retrozymes: Plant Circular RNAs Capable of Autonomous Replication.

Published in:

Plants (2223-7747), 2025, v. 14, n. 1, p. 61, doi. 10.3390/plants14010061

By:

Lezzhov, Alexander A.;
Atabekova, Anastasia K.;
Chergintsev, Denis A.;
Lazareva, Ekaterina A.;
Solovyev, Andrey G.;
Morozov, Sergey Y.

Publication type:

Article

Reverse Transcriptase/RNA Maturase Protein MatR Is Required for the Splicing of Various Group II Introns in Brassicaceae Mitochondria.

Published in:

Plant Cell, 2016, v. 28, n. 11, p. 2805, doi. 10.1105/tpc.16.00398

By:

Sultan, Laure D.;
Mileshina, Daria;
Grewe, Felix;
Rolle, Katarzyna;
Abudraham, Sivan;
Głodowicz, Paweł;
Niazi, Adnan Khan;
Keren, Ido;
Shevtsov, Sofia;
Klipcan, Liron;
Barciszewski, Jan;
Mower, Jeffrey P.;
Dietrich, André;
Ostersetzer-Biran, Oren

Publication type:

Article

Arabidopsis RNASE THREE LIKE2 Modulates the Expression of Protein-Coding Genes via 24-Nucleotide Small Interfering RNA-Directed DNA Methylation.

Published in:

Plant Cell, 2016, v. 28, n. 2, p. 406, doi. 10.1105/tpc.15.00540

By:

Elvira-Matelot, Emilie;
Hachet, Mélanie;
Shamandi, Nahid;
Comella, Pascale;
Sáez-Vásquez, Julio;
Zytnicki, Matthias;
Vaucheret, Hervé

Publication type:

Article

Ribozymes: Catalytic RNAs that cut things, make things, and do odd and useful jobs.

Published in:

Biologist, 2002, v. 49, n. 5, p. 199

By:

Walter, Nils G.;
Engelke, David R.

Publication type:

Article

Development and performance of prototype serologic and molecular tests for hepatitis delta infection.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-20455-5

By:

Coller, Kelly E.;
Butler, Emily K.;
Luk, Ka-Cheung;
Rodgers, Mary A.;
Cassidy, Michael;
Gersch, Jeffrey;
McNamara, Anne L.;
Kuhns, Mary C.;
Dawson, George J.;
Kaptue, Lazare;
Bremer, Birgit;
Wedemeyer, Heiner;
Cloherty, Gavin A.

Publication type:

Article

The Origin of Life in the Early Continental Crust: A Comprehensive Model.

Published in:

Life (2075-1729), 2025, v. 15, n. 3, p. 433, doi. 10.3390/life15030433

By:

Schreiber, Ulrich

Publication type:

Article

Development of Allosteric Ribozymes for ATP and l-Histidine Based on the R3C Ligase Ribozyme.

Published in:

Life (2075-1729), 2024, v. 14, n. 4, p. 520, doi. 10.3390/life14040520

By:

Akatsu, Yuna;
Mutsuro-Aoki, Hiromi;
Tamura, Koji

Publication type:

Article

Opinion: The Key Steps in the Origin of Life to the Formation of the Eukaryotic Cell.

Published in:

Life (2075-1729), 2024, v. 14, n. 2, p. 226, doi. 10.3390/life14020226

By:

Brunk, Clifford F.;
Marshall, Charles R.

Publication type:

Article

Life's Mechanism.

Published in:

Life (2075-1729), 2023, v. 13, n. 8, p. 1750, doi. 10.3390/life13081750

By:

Pierce, Simon

Publication type:

Article

Mechanism of Chiral-Selective Aminoacylation of an RNA Minihelix Explored by QM/MM Free-Energy Simulations.

Published in:

Life (2075-1729), 2023, v. 13, n. 3, p. 722, doi. 10.3390/life13030722

By:

Ando, Tadashi;
Tamura, Koji

Publication type:

Article

Towards an RNA/Peptides World by the Direct RNA Template Mechanism: The Emergence of Membrane-Stabilizing Peptides in RNA-Based Protocells.

Published in:

Life (2075-1729), 2023, v. 13, n. 2, p. 523, doi. 10.3390/life13020523

By:

Shi, Yu;
Yu, Chunwu;
Ma, Wentao

Publication type:

Article

Acquisition of Dual Ribozyme-Functions in Nonfunctional Short Hairpin RNAs through Kissing-Loop Interactions.

Published in:

Life (2075-1729), 2022, v. 12, n. 10, p. 1561, doi. 10.3390/life12101561

By:

Mutsuro-Aoki, Hiromi;
Tamura, Koji

Publication type:

Article

The Effect of Environment on the Evolution and Proliferation of Protocells of Increasing Complexity.

Published in:

Life (2075-1729), 2022, v. 12, n. 8, p. 1227, doi. 10.3390/life12081227

By:

Roy, Suvam;
Sengupta, Supratim

Publication type:

Article

Distinct Expansion of Group II Introns During Evolution of Prokaryotes and Possible Factors Involved in Its Regulation.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.849080

By:

Miura, Masahiro C.;
Nagata, Shohei;
Tamaki, Satoshi;
Tomita, Masaru;
Kanai, Akio

Publication type:

Article

Conserved Amino Acid Moieties of Candidatus Desulforudis audaxviator MazF Determine Ribonuclease Activity and Specificity.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.748619

By:

Tamiya-Ishitsuka, Hiroko;
Tsuruga, Masako;
Noda, Naohiro;
Yokota, Akiko

Publication type:

Article

Deep mutational scanning of the RNase III-like domain in Trypanosoma brucei RNA editing protein KREPB4.

Published in:

Frontiers in Cellular & Infection Microbiology, 2024, p. 1, doi. 10.3389/fcimb.2024.1381155

By:

McDermott, Suzanne M.;
Vy Pham;
Oliver, Brian;
Carnes, Jason;
Sather, D. Noah;
Stuart, Kenneth D.

Publication type:

Article

Ocular Surface Expression of SARS-CoV-2 Receptors.

Published in:

2020

By:

Leonardi, Andrea;
Rosani, Umberto;
Brun, Paola

Publication type:

journal article

Biotechnological applications of mobile group II introns and their reverse transcriptases: gene targeting, RNA-seq, and non-coding RNA analysis.

Published in:

Mobile DNA, 2014, v. 5, n. 1, p. 1, doi. 10.1186/1759-8753-5-2

By:

Enyeart, Peter J.;
Mohr, Georg;
Ellington, Andrew D.;
Lambowitz, Alan M.

Publication type:

Article

A pipeline of programs for collecting and analyzing group II intron retroelement sequences from GenBank.

Published in:

Mobile DNA, 2013, v. 4, n. 1, p. 1, doi. 10.1186/1759-8753-4-28

By:

Abebe, Michael;
Candales, Manuel A;
Duong, Adrian;
Hood, Keyar S.;
Tony Li;
Neufeld, Ryan A. E.;
Shakenov, Abat;
Runda Sun;
Li Wu;
Jarding, Ashley M.;
Semper, Cameron;
Zimmerly, Steven

Publication type:

Article

Serial transfer can aid the evolution of autocatalytic sets.

Published in:

Journal of Systems Chemistry, 2014, v. 5, n. 1, p. 1, doi. 10.1186/1759-2208-5-4

By:

Hordijk, Wim;
Vaidya, Nilesh;
Lehman, Niles

Publication type:

Article

A formal model of autocatalytic sets emerging in an RNA replicator system.

Published in:

Journal of Systems Chemistry, 2013, v. 4, n. 1, p. 1, doi. 10.1186/1759-2208-4-3

By:

Hordijk, Wim;
Steel, Mike

Publication type:

Article

The eightfold path to non-enzymatic RNA replication.

Published in:

Journal of Systems Chemistry, 2012, v. 3, n. 1, p. 1, doi. 10.1186/1759-2208-3-2

By:

Szostak, Jack W.

Publication type:

Article

Beyond allostery: Catalytic regulation of a deoxyribozyme through an entropy-driven DNA amplifier.

Published in:

Journal of Systems Chemistry, 2010, v. 1, n. 1, p. 1, doi. 10.1186/1759-2208-1-13

By:

Eckhoff, Grace;
Codrea, Vlad;
Ellington, Andrew D.;
Xi Chen

Publication type:

Article