Works matching DE "TOXICOGENOMICS"

Results: 446

A Turnaround for Toxicogenomics?

Published in:

Bio-IT World, 2010, v. 9, n. 6, p. 28

By:

Farkas, Dora

Publication type:

Article

Data Hide and Seek vs. Safety Assessment.

Published in:

Bio-IT World, 2010, v. 9, n. 6, p. 12

By:

BUSH, ERNIE

Publication type:

Article

The Next Big Thing.

Published in:

Bio-IT World, 2010, v. 9, n. 4, p. 10

By:

BUSH, ERNIE

Publication type:

Article

Bayesian multi-tensor factorization.

Published in:

Machine Learning, 2016, v. 105, n. 2, p. 233, doi. 10.1007/s10994-016-5563-y

By:

Khan, Suleiman;
Leppäaho, Eemeli;
Kaski, Samuel

Publication type:

Article

Fusarium proliferatum causing head blight on oat in Hungary.

Published in:

European Journal of Plant Pathology, 2016, v. 146, n. 3, p. 699, doi. 10.1007/s10658-016-0940-8

By:

Molnár, Orsolya

Publication type:

Article

Toxicogenomic response of Mycobacterium bovis BCG to peracetic acid and a comparative analysis of the M. bovis BCG response to three oxidative disinfectants.

Published in:

Applied Microbiology & Biotechnology, 2011, v. 90, n. 1, p. 277, doi. 10.1007/s00253-010-2931-6

By:

Nde, Chantal W.;
Toghrol, Freshteh;
Hyeung-Jin Jang;
Bentley, William E.

Publication type:

Article

Global transcriptome analysis of the Mycobacterium bovis BCG response to sodium hypochlorite.

Published in:

Applied Microbiology & Biotechnology, 2009, v. 85, n. 1, p. 127, doi. 10.1007/s00253-009-2208-0

By:

Hyeung-Jin Jang;
Nde, Chantal;
Toghrol, Freshteh;
Bentley, William

Publication type:

Article

Investigating the effectiveness of DNA microarray analysis for identifying the genes involved in l-lactate production by Saccharomyces cerevisiae.

Published in:

Applied Microbiology & Biotechnology, 2009, v. 84, n. 6, p. 1149, doi. 10.1007/s00253-009-2209-z

By:

Hirasawa, Takashi;
Ookubo, Aki;
Yoshikawa, Katsunori;
Nagahisa, Keisuke;
Furusawa, Chikara;
Sawai, Hideki;
Shimizu, Hiroshi

Publication type:

Article

Microarray analysis of toxicogenomic effects of triclosan on Staphylococcus aureus.

Published in:

Applied Microbiology & Biotechnology, 2008, v. 78, n. 4, p. 695, doi. 10.1007/s00253-008-1349-x

By:

Jang, Hyeung-Jin;
Chang, Matthew;
Toghrol, Freshteh;
Bentley, William

Publication type:

Article

TarPred: a web application for predicting therapeutic and side effect targets of chemical compounds.

Published in:

Bioinformatics, 2015, v. 31, n. 12, p. 2049, doi. 10.1093/bioinformatics/btv099

By:

Xian Liu;
Yuan Gao;
Jianlong Peng;
Yuan Xu;
YulanWang;
Nannan Zhou;
Jing Xing;
Xiaomin Luo;
Hualiang Jiang;
Mingyue Zheng

Publication type:

Article

diXa: a data infrastructure for chemical safety assessment.

Published in:

2015

By:

Hendrickx, Diana M.;
Aerts, Hugo J. W. L.;
Caiment, Florian;
Clark, Dominic;
Ebbels, Timothy M. D.;
Evelo, Chris T.;
Gmuender, Hans;
Hebels, Dennie G. A. J.;
Herwig, Ralf;
Hescheler, Jürgen;
Jennen, Danyel G. J.;
Jetten, Marlon J. A.;
Kanterakis, Stathis;
Keun, Hector C.;
Matser, Vera;
Overington, John P.;
Pilicheva, Ekaterina;
Sarkans, Ugis;
Segura-Lepe, Marcelo P.;
Sotiriadou, Isaia

Publication type:

Product Review

Clustered alignments of gene-expression time series data.

Published in:

Bioinformatics, 2009, v. 25, n. 12, p. i119, doi. 10.1093/bioinformatics/btp206

By:

Adam A. Smith;
Aaron Vollrath;
Christopher A. Bradfield;
Mark Craven

Publication type:

Article

Toxicogenomics of drug induced liver injury – from mechanistic understanding to early prediction.

Published in:

Drug Metabolism Reviews, 2021, v. 53, n. 2, p. 245, doi. 10.1080/03602532.2021.1894571

By:

Lauschke, Volker M.

Publication type:

Article

Transcriptional profiling of reactive metabolites for elucidating toxicological mechanisms: a case study of quinoneimine-forming agents.

Published in:

Drug Metabolism Reviews, 2015, v. 47, n. 1, p. 45, doi. 10.3109/03602532.2014.978081

By:

Stamper, Brendan D.

Publication type:

Article

Functional Genomics Approaches to Studies of the Cytochrome P450 Superfamily.

Published in:

Drug Metabolism Reviews, 2007, v. 39, n. 2/3, p. 389, doi. 10.1080/03602530701498760

By:

Režen, Tadeja;
Contreras, Juan A.;
Rozman, Damjana

Publication type:

Article

Abstracts.

Published in:: 2002
Publication type:: Abstract

Gene-expression profiling in gill and liver of zebrafish exposed to produced water.

Published in:

International Journal of Environmental Analytical Chemistry, 2007, v. 87, n. 3, p. 195, doi. 10.1080/03067310600959164

By:

Olsvik, Pål A.;
Lie, Kai K.;
Stavrum, Anne-Kristin;
Meier, Sonnich

Publication type:

Article

Gene Expression Data Analysis Using Multiobjective Clustering Improved with SVM Based Ensemble.

Published in:

In Silico Biology, 2012, v. 11, n. 1/2, p. 19, doi. 10.3233/isb-2012-0441

By:

Mukhopadhyay, Anirban;
Maulik, Ujjwal;
Bandyopadhyay, Sanghamitra

Publication type:

Article

Metabolomics Discovers Early-Response Metabolic Biomarkers that Can Predict Chronic Reproductive Fitness in Individual Daphnia magna.

Published in:

Metabolites (2218-1989), 2018, v. 8, n. 3, p. 42, doi. 10.3390/metabo8030042

By:

Taylor, Nadine S.;
Gavin, Alex;
Viant, Mark R.

Publication type:

Article

In silico insights into prediction and analysis of potential novel pyrrolopyridine analogs against human MAPKAPK-2: a new SAR-based hierarchical clustering approach.

Published in:

3 Biotech, 2018, v. 8, n. 9, p. 1, doi. 10.1007/s13205-018-1405-x

By:

Konidala, Kranthi Kumar;
Bommu, Uma Devi;
Yeguvapalli, Suneetha;
Pabbaraju, Neeraja

Publication type:

Article

Xenobiotic sensing and signalling in higher plants.

Published in:

Journal of Experimental Botany, 2012, v. 63, n. 11, p. 3999, doi. 10.1093/jxb/ers102

By:

Ramel, Fanny;
Sulmon, Cécile;
Serra, Anne-Antonella;
Gouesbet, Gwenola;
Couée, Ivan

Publication type:

Article

Biological Aging Acceleration Due to Environmental Exposures: An Exciting New Direction in Toxicogenomics Research.

Published in:

Genes, 2024, v. 15, n. 1, p. 16, doi. 10.3390/genes15010016

By:

Dutta, Sudipta;
Goodrich, Jaclyn M.;
Dolinoy, Dana C.;
Ruden, Douglas M.

Publication type:

Article

Toxicogenomics and Cell-Based Assays for Toxicology.

Published in:

Interdisciplinary Bio Central, 2009, n. 1, p. 1, doi. 10.4051/ibc.2009.3.0010

By:

Weida Tong;
Hong Fang;
Mendrick, Donna

Publication type:

Article

Literature optimized integration of gene expression for organ-specific evaluation of toxicogenomics datasets.

Published in:

PLoS ONE, 2019, v. 14, n. 1, p. 1, doi. 10.1371/journal.pone.0210467

By:

Taškova, Katerina;
Fontaine, Jean-Fred;
Mrowka, Ralf;
Andrade-Navarro, Miguel A.

Publication type:

Article

Ambiguity in logic-based models of gene regulatory networks: An integrative multi-perturbation analysis.

Published in:

PLoS ONE, 2018, v. 13, n. 11, p. 1, doi. 10.1371/journal.pone.0206976

By:

Alizad-Rahvar, Amir Reza;
Sadeghi, Mehdi

Publication type:

Article

Inferring drug-disease associations from integration of chemical, genomic and phenotype data using network propagation.

Published in:

BMC Medical Genomics, 2013, v. 6, p. 1, doi. 10.1186/1755-8794-6-S3-S4

By:

Yu-Fen Huang;
Hsiang-Yuan Yeh;
Von-Wun Soo

Publication type:

Article

Predicting environmental chemical factors associated with disease-related gene expression data.

Published in:

BMC Medical Genomics, 2010, v. 3, p. 17, doi. 10.1186/1755-8794-3-17

By:

Patel, Chirag J.;
Butte, Atul J.

Publication type:

Article

DTox: A deep neural network-based in visio lens for large scale toxicogenomics data.

Published in:

Journal of Toxicological Sciences, 2024, v. 49, n. 3, p. 105, doi. 10.2131/jts.49.105

By:

Takeshi Hase;
Ghosh, Samik;
Ken-ichi Aisaki;
Satoshi Kitajima;
Jun Kanno;
Hiroaki Kitano;
Ayako Yachie

Publication type:

Article

Isoflurane is a suitable alternative to ether for anesthetizing rats prior to euthanasia for gene expression analysis.

Published in:

Journal of Toxicological Sciences, 2017, v. 42, n. 4, p. 491, doi. 10.2131/jts.42.491

By:

Noriyuki Nakatsu;
Yoshinobu Igarashi;
Taiki Aoshi;
Isao Hamaguchi;
Masumichi Saito;
Takuo Mizukami;
Haruka Momose;
Ken J. Ishii;
Hiroshi Yamada

Publication type:

Article

Mechanism-based risk assessment strategy for drug-induced cholestasis using the transcriptional benchmark dose derived by toxicogenomics.

Published in:

Journal of Toxicological Sciences, 2017, v. 42, n. 4, p. 427, doi. 10.2131/jts.42.427

By:

Taisuke Kawamoto;
Yuichi Ito;
Osamu Morita;
Hiroshi Honda

Publication type:

Article

Evaluation of DNA microarray results in the Toxicogenomics Project (TGP) consortium in Japan.

Published in:

Journal of Toxicological Sciences, 2012, v. 37, n. 4, p. 791, doi. 10.2131/jts.37.791

By:

Nakatsu Noriyuki;
Yoshinobu Igarashi;
Atsushi Ono;
Hiroshi Yamada;
Yasuo Ohno;
Tetsuro Urushidani

Publication type:

Article

Toxicogenomic analysis of exposure to TCDD, PCB126 and PCB153: identification of genomic biomarkers of exposure to AhR ligands.

Published in:

BMC Genomics, 2010, v. 11, p. 583, doi. 10.1186/1471-2164-11-583

By:

Ovando, Bladimir J.;
Ellison, Corie A.;
Vezina, Chad M.;
Olson, James R.

Publication type:

Article

Sources of variation in baseline gene expression levels from toxicogenomics study control animals across multiple laboratories.

Published in:

BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-285

By:

Boedigheimer, Michael J.;
Wolfinger, Russell D.;
Bass, Michael B.;
Bushel, Pierre R.;
Chou, Jeff W.;
Cooper, Matthew;
Corton, J. Christopher;
Fostel, Jennifer;
Hester, Susan;
Lee, Janice S.;
Fenglong Liu;
Jie Liu;
Hui-Rong Qian;
Quackenbush, John;
Pettit, Syril;
Thompson, Karol L.

Publication type:

Article

In vivo -- in vitro toxicogenomic comparison of TCDD-elicited gene expression in Hepa1c1c7 mouse hepatoma cells and C57BL/6 hepatic tissue.

Published in:

BMC Genomics, 2006, v. 7, p. 80, doi. 10.1186/1471-2164-7-80

By:

Dere, Edward;
Boverhof, Darrell R;
Burgoon, Lyle D;
Zacharewski, Timothy R

Publication type:

Article

A Legionella pneumophila Effector Protein Encoded in a Region of Genomic Plasticity Binds to Dot/Icm-Modified Vacuoles.

Published in:

PLoS Pathogens, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.ppat.1000278

By:

Ninio, Shira;
Celli, Jean;
Roy, Craig R.

Publication type:

Article

Genomic Analysis Reveals a Potential Role for Cell Cycle Perturbation in HCV-Mediated Apoptosis of Cultured Hepatocytes.

Published in:

PLoS Pathogens, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.ppat.1000269

By:

Walters, Kathie-Anne;
Syder, Andrew J.;
Lederer, Sharon L.;
Diamond, Deborah L.;
Paeper, Bryan;
Rice, Charles M.;
Katze, Michael G.

Publication type:

Article

High-throughput toxicogenomic screening of chemicals in the environment using metabolically competent hepatic cell cultures.

Published in:

NPJ Systems Biology & Applications, 2021, v. 7, n. 1, p. 1, doi. 10.1038/s41540-020-00166-2

By:

Franzosa, Jill A.;
Bonzo, Jessica A.;
Jack, John;
Baker, Nancy C.;
Kothiya, Parth;
Witek, Rafal P.;
Hurban, Patrick;
Siferd, Stephen;
Hester, Susan;
Shah, Imran;
Ferguson, Stephen S.;
Houck, Keith A.;
Wambaugh, John F.

Publication type:

Article

Molecular targets of developmental exposure to bisphenol A in diabesity: a focus on endoderm-derived organs.

Published in:

Obesity Reviews, 2017, v. 18, n. 1, p. 99, doi. 10.1111/obr.12471

By:

Porreca, I.;
Ulloa-Severino, L.;
Almeida, P.;
Cuomo, D.;
Nardone, A.;
Falco, G.;
Mallardo, M.;
Ambrosino, C.

Publication type:

Article

Asymmetric author-topic model for knowledge discovering of big data in toxicogenomics.

Published in:

Frontiers in Pharmacology, 2015, v. 6, p. 1, doi. 10.3389/fphar.2015.00081

By:

Ming-Hua Chung;
Yuping Wang;
Hailin Tang;
Wen Zou;
Basinger, John;
Xiaowei Xu;
Weida Tong;
Evans, Marina;
Vracko, Marjan;
Baker, Nancy Cole

Publication type:

Article

Erratum: 10 Years of Toxicogenomics section in Frontiers in Genetics: Past discoveries and Future Perspectives.

Published in:: Frontiers in Genetics, 2023, p. 1, doi. 10.3389/fgene.2023.1213706
Publication type:: Article

Biomarker prediction for membranous nephropathy prognosis by microarray analysis.

Published in:

Nephrology, 2019, v. 24, n. 5, p. 526, doi. 10.1111/nep.13446

By:

Zhou, Guangyu;
Xin, Guangda;
Zhang, Wenlong;
Zhang, Xiaofei

Publication type:

Article

Antifungal activity of fatty acids and their monoglycerides against Fusarium spp. in a laboratory medium.

Published in:

International Journal of Food Science & Technology, 2009, v. 44, n. 2, p. 242, doi. 10.1111/j.1365-2621.2007.01639.x

By:

Altieri, Clelia;
Bevilacqua, Antonio;
Cardillo, Daniela;
Sinigaglia, Milena

Publication type:

Article

Inhibition of toxicogenic Bacillus licheniformis 553/1 in Nigerian Wara soft cheese by nisin-producing Lactococcus lactis LAC309.

Published in:

International Journal of Food Science & Technology, 2009, v. 44, n. 2, p. 246, doi. 10.1111/j.1365-2621.2007.01651.x

By:

Raheem, Dele;
Saris, Per E. J.

Publication type:

Article

Current understanding of the mechanism of benzene-induced leukemia in humans: implications for risk assessment.

Published in:

Carcinogenesis, 2012, v. 33, n. 2, p. 240, doi. 10.1093/carcin/bgr297

By:

McHale, Cliona M.;
Zhang, Luoping;
Smith, Martyn T.

Publication type:

Article

Toxicogenomics of iron oxide nanoparticles in the nematode C. elegans.

Published in:

Nanotoxicology, 2017, v. 11, n. 5, p. 647, doi. 10.1080/17435390.2017.1342011

By:

Gonzalez-Moragas, Laura;
Yu, Si-Ming;
Benseny-Cases, Núria;
Stürzenbaum, Stephen;
Roig, Anna;
Laromaine, Anna

Publication type:

Article

Toxicogenomic effects of nano- and bulk-TiO 2 particles in the soil nematode Caenorhabditis elegans.

Published in:

Nanotoxicology, 2015, v. 9, n. 4, p. 502, doi. 10.3109/17435390.2014.948941

By:

Rocheleau, Sylvie;
Arbour, Mélanie;
Elias, Miria;
Sunahara, Geoffrey I.;
Masson, Luke

Publication type:

Article

Toxicogenomic effects of nano- and bulk-TiO<sub>2</sub> particles in the soil nematode Caenorhabditis elegans.

Published in:

Nanotoxicology, 2015, v. 9, n. 3, p. 502, doi. 10.3109/17435390.2014.948941

By:

Rocheleau, Sylvie;
Arbour, Mélanie;
Elias, Miria;
Sunahara, Geoffrey I.;
Masson, Luke

Publication type:

Article

Impact of Genomics Platform and Statistical Filtering on Transcriptional Benchmark Doses (BMD) and Multiple Approaches for Selection of Chemical Point of Departure (PoD).

Published in:

PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0136764

By:

Webster, A. Francina;
Chepelev, Nikolai;
Gagné, Rémi;
Kuo, Byron;
Recio, Leslie;
Williams, Andrew;
Yauk, Carole L.

Publication type:

Article

Natural Variation in Fish Transcriptomes: Comparative Analysis of the Fathead Minnow (Pimephales promelas) and Zebrafish (Danio rerio).

Published in:

PLoS ONE, 2014, v. 9, n. 12, p. 1, doi. 10.1371/journal.pone.0114178

By:

Wang, Rong-Lin;
Bencic, David C.;
Garcia-Reyero, Natàlia;
Perkins, Edward J.;
Villeneuve, Daniel L.;
Ankley, Gerald T.;
Biales, Adam D.

Publication type:

Article

Exposure to Low-Dose Bisphenol A Impairs Meiosis in the Rat Seminiferous Tubule Culture Model: A Physiotoxicogenomic Approach.

Published in:

PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0106245

By:

Ali, Sazan;
Steinmetz, Gérard;
Montillet, Guillaume;
Perrard, Marie-Hélène;
Loundou, Anderson;
Durand, Philippe;
Guichaoua, Marie-Roberte;
Prat, Odette

Publication type:

Article