Works matching DE "MICROBIAL ecology"

Results: 5000

Exopolysaccharides in microbial interactions: signalling, quorum sensing, and community dynamics.

Published in:

Natural Product Research, 2025, v. 39, n. 11, p. 3224, doi. 10.1080/14786419.2024.2405867

By:

Deo, Rachna;
Lakra, Usha;
Ojha, Mihir;
Nigam, Vinod Kumar;
Sharma, Shubha Rani

Publication type:

Article

MvfR Shapes Pseudomonas aeruginosa Interactions in Polymicrobial Contexts: Implications for Targeted Quorum-Sensing Inhibition.

Published in:

Cells (2073-4409), 2025, v. 14, n. 10, p. 744, doi. 10.3390/cells14100744

By:

Wheeler, Kelsey M.;
Oh, Myung Whan;
Fusco, Julianna;
Mershon, Aishlinn;
Kim, Erin;
De Oliveira, Antonia;
Rahme, Laurence G.

Publication type:

Article

HGF Aggravated Periodontitis-Associated Gut Barrier and Microbial Dysfunction: Implications for Oral–Gut Axis Regulation.

Published in:

Biology (2079-7737), 2025, v. 14, n. 5, p. 496, doi. 10.3390/biology14050496

By:

Chen, Zhen;
Zhong, Yang;
Chen, Lu;
Liu, Weijia;
Lin, Chuyin;
Chen, Yannan;
Wang, Xinhong

Publication type:

Article

Prevalence and aetiological agents of childhood urinary tract infections at the University Teaching Hospital (CHU) of Bouaké, Côte d'Ivoire.

Published in:

African Journal of Clinical & Experimental Microbiology, 2025, v. 26, n. 2, p. 144, doi. 10.4314/ajcem.v26i2.5

By:

Gawa, K. J.;
Monemo, P.;
N'Guessan, M.;
Tadet, J. O. N.;
Oka, K. H.;
Akanji, I. A.;
Koné, M. O.;
Vaho, M.;
Traoré, F.;
Koffi, C. Akoua

Publication type:

Article

Differential impact of spotted fever group rickettsia and anaplasmosis on tick microbial ecology: evidence from multi-species comparative microbiome analysis.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1589263

By:

Wang, Jin-qi;
Yu, Tian;
Qiu, Hong-yu;
Ji, Sheng-wei;
Xu, Zhi-qiang;
Cui, Qi-chao;
Li, Hai-feng;
Liang, Wan-feng;
Feng, Shuai;
Fu, Chen-tao;
Gao, Xu;
Han, Zhen-zhen;
Tian, Wan-nian;
Li, Ji-xu;
Xue, Shu-jiang

Publication type:

Article

Impact of Environmental Factors on Aquatic Ecosystem.

Published in:

Water (20734441), 2025, v. 17, n. 10, p. 1453, doi. 10.3390/w17101453

By:

Ban, Xuan;
Guo, Wenxian;
Fu, Yicheng

Publication type:

Article

The apple of discord: can spider cocoons be equipped with antimicrobial factors?—a systematic review.

Published in:

Frontiers in Zoology, 2025, v. 22, n. 1, p. 1, doi. 10.1186/s12983-025-00563-5

By:

Glenszczyk, Mateusz;
Lis, Artur;
Porc, Weronika;
Pacwa-Płociniczak, Magdalena;
Babczyńska, Agnieszka

Publication type:

Article

Bilirubin reductase shows host-specific associations in animal large intestines.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae242

By:

Dufault-Thompson, Keith;
Levy, Sophia;
Hall, Brantley;
Jiang, Xiaofang

Publication type:

Article

Virophage infection mode determines ecological and evolutionary changes in a host-virus-virophage system.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae237

By:

del Arco, Ana;
Becks, Lutz

Publication type:

Article

Coastal bacteria and protists assimilate viral carbon and nitrogen.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae231

By:

Martínez Martínez, Joaquín;
Talmy, David;
Kimbrel, Jeffrey A;
Weber, Peter K;
Mayali, Xavier

Publication type:

Article

Urea assimilation and oxidation support activity of phylogenetically diverse microbial communities of the dark ocean.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae230

By:

Arandia-Gorostidi, Nestor;
Jaffe, Alexander L;
Parada, Alma E;
Kapili, Bennett J;
Casciotti, Karen L;
Salcedo, Rebecca S R;
Baumas, Chloé M J;
Dekas, Anne E

Publication type:

Article

Isolate-anchored comparisons reveal evolutionary and functional differentiation across SAR86 marine bacteria.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae227

By:

Ramfelt, Oscar;
Freel, Kelle C;
Tucker, Sarah J;
Nigro, Olivia D;
Rappé, Michael S

Publication type:

Article

Bacterial population-level trade-offs between drought tolerance and resource acquisition traits impact decomposition.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae224

By:

Malik, Ashish A;
Martiny, Jennifer B H;
Ribeiro, Antonio;
Sheridan, Paul O;
Weihe, Claudia;
Brodie, Eoin L;
Allison, Steven D

Publication type:

Article

Impact of timing on the invasion of synthetic bacterial communities.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae220

By:

Dooley, Keven D;
Henry, Lucas P;
Bergelson, Joy

Publication type:

Article

Chronic exposure to polycyclic aromatic hydrocarbons alters skin virome composition and virus–host interactions.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae218

By:

Du, Shicong;
Tong, Xinzhao;
Leung, Marcus H Y;
Betts, Richard J;
Woo, Anthony C;
Bastien, Philippe;
Misra, Namita;
Aguilar, Luc;
Clavaud, Cécile;
Lee, Patrick K H

Publication type:

Article

Isolation and biogeography of the oligotrophic ocean diazotroph, Crocosphaera waterburyi nov. sp.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae217

By:

Cleveland, Catie S;
Turk-Kubo, Kendra A;
Zhao, Yiming;
Zehr, Jonathan P;
Webb, Eric A

Publication type:

Article

Metagenomic time series reveals a Western English Channel viral community dominated by members with strong seasonal signals.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae216

By:

Bolaños, Luis M;
Michelsen, Michelle;
Temperton, Ben

Publication type:

Article

Ecological success of extreme halophiles subjected to recurrent osmotic disturbances is primarily driven by congeneric species replacement.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae215

By:

Bustos-Caparros, Esteban;
Viver, Tomeu;
Gago, Juan F;
Rodriguez-R, Luis M;
Hatt, Janet K;
Venter, Stephanus N;
Fuchs, Bernhard M;
Amann, Rudolf;
Bosch, Rafael;
Konstantinidis, Konstantinos T;
Rossello-Mora, Ramon

Publication type:

Article

Trade-offs between receptor modification and fitness drive host-bacteriophage co-evolution leading to phage extinction or co-existence.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae214

By:

Chen, Lin;
Zhao, Xue;
Wongso, Shelyn;
Lin, Zhuohui;
Wang, Siyun

Publication type:

Article

Resource sharing of an infant gut microbiota synthetic community in combinations of human milk oligosaccharides.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae209

By:

Ioannou, Athanasia;
Berkhout, Maryse D;
Scott Jr, William T;
Blijenberg, Bernadet;
Boeren, Sjef;
Mank, Marko;
Knol, Jan;
Belzer, Clara

Publication type:

Article

Experimental evolution at ecological scales allows linking of viral genotypes to specific host strains.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae208

By:

Ramos-Barbero, María Dolores;
Aldeguer-Riquelme, Borja;
Viver, Tomeu;
Villamor, Judith;
Carrillo-Bautista, Miryam;
López-Pascual, Cristina;
Konstantinidis, Konstantinos T;
Martínez-García, Manuel;
Santos, Fernando;
Rossello-Mora, Ramon;
Antón, Josefa

Publication type:

Article

Genome-resolved metaproteogenomic and nanosolid characterization of an inactive vent chimney densely colonized by enigmatic DPANN archaea.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae207

By:

Takamiya, Hinako;
Kouduka, Mariko;
Kato, Shingo;
Suga, Hiroki;
Oura, Masaki;
Yokoyama, Tadashi;
Suzuki, Michio;
Mori, Masaru;
Kanai, Akio;
Suzuki, Yohey

Publication type:

Article

Nitrate-dependent antimony oxidase in an uncultured Symbiobacteriaceae member.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae204

By:

Wang, Liying;
Yin, Zhipeng;
Yan, Wei;
Hao, Jialong;
Tian, Fei;
Shi, Jianbo

Publication type:

Article

Dispersal of microbes from grassland fire smoke to soils.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae203

By:

Ellington, Adam J;
Walters, Kendra;
Christner, Brent C;
Fox, Sam;
Bonfantine, Krista;
Walker, Cassie;
Lampman, Phinehas;
Vuono, David C;
Strickland, Michael;
Lambert, Katie;
Kobziar, Leda N

Publication type:

Article

Comprehensive profile of the companion animal gut microbiome integrating reference-based and reference-free methods.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae201

By:

Branck, Tobyn;
Hu, Zhiji;
Nickols, William A;
Walsh, Aaron M;
Bhosle, Amrisha;
Short, Meghan I;
Nearing, Jacob T;
Asnicar, Francesco;
McIver, Lauren J;
Maharjan, Sagun;
Rahnavard, Ali;
Louyakis, Artemis S;
Badri, Dayakar V;
Brockel, Christoph;
Thompson, Kelsey N;
Huttenhower, Curtis

Publication type:

Article

Sulfur-oxidizing symbionts colonize the digestive tract of their lucinid hosts.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae200

By:

Alcaraz, Cristina M;
Séneca, Joana;
Kunert, Martin;
Pree, Christopher;
Sudo, Marta;
Petersen, Jillian M

Publication type:

Article

Nonkin interactions between Bacillus subtilis soil isolates limit the spread of swarming deficient cheats.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae199

By:

Belcijan Pandur, Katarina;
Kraigher, Barbara;
Tomac, Ana;
Stefanic, Polonca;
Mandic Mulec, Ines

Publication type:

Article

Trans-aconitic acid assimilation system as a widespread bacterial mechanism for environmental adaptation.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae198

By:

Zheng, Cao;
Liu, Dingqi;
Lu, Xinyu;
Wu, Huijun;
Hua, Jingyi;
Zhang, Chuang;
Liu, Kang;
Li, Changchun;
He, Jin;
Du, Cuiying

Publication type:

Article

Simple Porifera holobiont reveals complex interactions between the host, an archaeon, a bacterium, and a phage.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae197

By:

Garritano, Alessandro N;
Zhang, Zhelun;
Jia, Yunke;
Allen, Michelle A;
Hill, Lilian J;
Kuzhiumparambil, Unnikrishnan;
Hinkley, Cora;
Raina, Jean-Baptiste;
Peixoto, Raquel S;
Thomas, Torsten

Publication type:

Article

Leveraging genomic information to predict environmental preferences of bacteria.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae195

By:

Ramoneda, Josep;
Hoffert, Michael;
Stallard-Olivera, Elias;
Casamayor, Emilio O;
Fierer, Noah

Publication type:

Article

High-sugar diet leads to loss of beneficial probiotics in housefly larvae guts.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae193

By:

Voulgari-Kokota, Anna;
Boatta, Francesco;
Rijkers, Ruud;
Wertheim, Bregje;
Beukeboom, Leo W;
Ellers, Jacintha;
Salles, Joana Falcao

Publication type:

Article

Recruitment of complete crAss-like phage genomes reveals their presence in chicken viromes, few human-specific phages, and lack of universal detection.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae192

By:

Ramos-Barbero, María Dolores;
Gómez-Gómez, Clara;
Vique, Gloria;
Sala-Comorera, Laura;
Rodríguez-Rubio, Lorena;
Muniesa, Maite

Publication type:

Article

Pathogen non-planktonic phases within the urinary tract impact early infection and resistance evolution.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae191

By:

Raatz, Michael;
de Azevedo-Lopes, Amanda;
Drabik, Karolina;
Traulsen, Arne;
Waclaw, Bartlomiej

Publication type:

Article

Biofilms inactivate the free-living stage of Batrachochytrium dendrobatidis, the most destructive pathogen for vertebrate diversity.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae189

By:

Sentenac, Hugo;
Schmeller, Dirk S;
Caubet, Solène;
Carsin, Adélaïde;
Guillet, Rémi;
Ferriol, Jessica;
Leflaive, Joséphine;
Loyau, Adeline

Publication type:

Article

Gut microbiota carbon and sulfur metabolisms support Salmonella infections.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae187

By:

Leleiwi, Ikaia;
Kokkinias, Katherine;
Kim, Yongseok;
Baniasad, Maryam;
Shaffer, Michael;
Sabag-Daigle, Anice;
Daly, Rebecca A;
Flynn, Rory M;
Wysocki, Vicki H;
Ahmer, Brian M M;
Borton, Mikayla A;
Wrighton, Kelly C

Publication type:

Article

Niche breadth specialization impacts ecological and evolutionary adaptation following environmental change.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae183

By:

Gubry-Rangin, Cécile;
Aigle, Axel;
Herrera-Alsina, Leonel;
Lancaster, Lesley T;
Prosser, James I

Publication type:

Article

Interplay between particle size and microbial ecology in the gut microbiome.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae168

By:

Letourneau, Jeffrey;
Carrion, Verónica M;
Zeng, Jun;
Jiang, Sharon;
Osborne, Olivia W;
Holmes, Zachary C;
Fox, Aiden;
Epstein, Piper;
Tan, Chin Yee;
Kirtley, Michelle;
Surana, Neeraj K;
David, Lawrence A

Publication type:

Article

Bacterial chemolithoautotrophy in ultramafic plumes along the Mid-Atlantic Ridge.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae165

By:

Dede, Bledina;
Reeves, Eoghan P;
Walter, Maren;
Bach, Wolfgang;
Amann, Rudolf;
Meyerdierks, Anke

Publication type:

Article

Integrated overview of stramenopile ecology, taxonomy, and heterotrophic origin.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae150

By:

Jirsová, Dagmar;
Wideman, Jeremy G

Publication type:

Article

Leveraging genome-scale metabolic models to understand aerobic methanotrophs.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae102

By:

Wutkowska, Magdalena;
Tláskal, Vojtěch;
Bordel, Sergio;
Stein, Lisa Y;
Nweze, Justus Amuche;
Daebeler, Anne

Publication type:

Article

The atmosphere: a transport medium or an active microbial ecosystem?

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae092

By:

Lappan, Rachael;
Thakar, Jordan;
Molares Moncayo, Laura;
Besser, Alexi;
Bradley, James A;
Goordial, Jacqueline;
Trembath-Reichert, Elizabeth;
Greening, Chris

Publication type:

Article

Microbial ecology of the deep terrestrial subsurface.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae091

By:

Beaver, Rachel C;
Neufeld, Josh D

Publication type:

Article

Siderophores and competition for iron govern myxobacterial predation dynamics.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae077

By:

Contreras-Moreno, Francisco Javier;
Moraleda-Muñoz, Aurelio;
Marcos-Torres, Francisco Javier;
Cuéllar, Virginia;
Soto, María José;
Pérez, Juana;
Muñoz-Dorado, José

Publication type:

Article

Emergent antibiotic persistence in a spatially structured synthetic microbial mutualism.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae075

By:

Xiong, Xianyi;
Othmer, Hans G;
Harcombe, William R

Publication type:

Article

Bridging ecological assembly process and community stability upon bacterial invasions.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae066

By:

Liu, Xipeng;
Salles, Joana Falcão

Publication type:

Article

Prevalence of trace gas-oxidizing soil bacteria increases with radial distance from Polloquere hot spring within a high-elevation Andean cold desert.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae062

By:

Garvin, Zachary K;
Abades, Sebastián R;
Trefault, Nicole;
Alfaro, Fernando D;
Sipes, Katie;
Lloyd, Karen G;
Onstott, Tullis C

Publication type:

Article

High compositional and functional similarity in the microbiome of deep-sea sponges.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrad030

By:

Díez-Vives, Cristina;
Riesgo, Ana

Publication type:

Article

Biocontrol in built environments to reduce pathogen exposure and infection risk.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrad024

By:

Gottel, Neil R;
Hill, Megan S;
Neal, Maxwell J;
Allard, Sarah M;
Zengler, Karsten;
Gilbert, Jack A

Publication type:

Article

Metagenomic Comparison of Gut Microbes of Lemur catta in Captive and Semi-Free-Range Environments.

Published in:

Animals (2076-2615), 2025, v. 15, n. 10, p. 1442, doi. 10.3390/ani15101442

By:

Xu, Chunzhong;
Guo, Xinzi;
Li, Lian

Publication type:

Article

Going back to the roots: the microbial ecology of the rhizosphere.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 11, p. 789, doi. 10.1038/nrmicro3109

By:

Philippot, Laurent;
Raaijmakers, Jos M.;
Lemanceau, Philippe;
van der Putten, Wim H.

Publication type:

Article