Works matching DE "SOFTWARE sequencers"

Results: 232

Software Standards in Next-Gen Genomics.

Published in:

Bio-IT World, 2011, v. 10, n. 5, p. 51

By:

PHARR, BRUCE

Publication type:

Article

Single Molecule Sequencing and the Future.

Published in:: 2011
Publication type:: Interview

Powering Preventative Medicine.

Published in:

Bio-IT World, 2011, v. 10, n. 5, p. 27

By:

DAVIES, KEVIN

Publication type:

Article

Sequencing the Earth.

Published in:

Bio-IT World, 2011, v. 10, n. 5, p. 53

By:

NATOLI, VINCENT

Publication type:

Article

Quebec's Genizon Biosciences Closes its Doors.

Published in:

Bio-IT World, 2011, v. 10, n. 5, p. 12

By:

DAVIES, KEVIN

Publication type:

Article

Savoring an NGS Software Smorgasbord.

Published in:

Bio-IT World, 2011, v. 10, n. 5, p. 35

By:

PROFITT, ALLISON

Publication type:

Article

Don't Hoard Your Next-Gen Data.

Published in:

Bio-IT World, 2010, v. 9, n. 5, p. 8

By:

CLAMP, MICHELE

Publication type:

Article

Next-Gen Social Media.

Published in:

Bio-IT World, 2010, v. 9, n. 5, p. 7

By:

GLAZER, ERIC

Publication type:

Article

Analyzing the Next Generation of Sequence.

Published in:: 2009
Publication type:: Interview

The Next Generation in Sequencing Is SOLiD.

Published in:

Bio-IT World, 2006, v. 5, n. 6, p. 17

By:

McDonald, Kate

Publication type:

Article

CondioSense: high-quality context-aware service for audio sensing system via active sonar.

Published in:

Personal & Ubiquitous Computing, 2017, v. 21, n. 1, p. 17, doi. 10.1007/s00779-016-0981-1

By:

Li, Fan;
Chen, Huijie;
Song, Xiaoyu;
Zhang, Qian;
Li, Youqi;
Wang, Yu

Publication type:

Article

AFRESh: an adaptive framework for compression of reads and assembled sequences with random access functionality.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1464, doi. 10.1093/bioinformatics/btx001

By:

Paridaens, Tom;
Van Wallendael, Glenn;
De Neve, Wesley;
Lambert, Peter

Publication type:

Article

GWAlpha: genome-wide estimation of additive effects (alpha) based on trait quantile distribution from pool-sequencing experiments.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1246, doi. 10.1093/bioinformatics/btw805

By:

Fournier-Level, Alexandre;
Robin, Charles;
Balding, David J.

Publication type:

Article

DACE: a scalable DP-means algorithm for clustering extremely large sequence data.

Published in:

Bioinformatics, 2017, v. 33, n. 6, p. 834, doi. 10.1093/bioinformatics/btw722

By:

Linhao Jiang;
Yichao Dong;
Ning Chen;
Ting Chen

Publication type:

Article

INTEGRATE-neo: a pipeline for personalized gene fusion neoantigen discovery.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 555, doi. 10.1093/bioinformatics/btw674

By:

Jin Zhang;
Mardis, Elaine R.;
Maher, Christopher A.

Publication type:

Article

Isomorphic semantic mapping of variant call format (VCF2RDF).

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 547, doi. 10.1093/bioinformatics/btw652

By:

Penha, Emanuel Diego S.;
Iriabho, Egiebade;
Dussaq, Alex;
de Oliveira, Diana Magalhães;
Almeida, Jonas S.

Publication type:

Article

Rapid and powerful detection of subtle allelic imbalance from exome sequencing data with hapLOHseq.

Published in:

Bioinformatics, 2016, v. 32, n. 19, p. 3015, doi. 10.1093/bioinformatics/btw340

By:

Lucas, F. Anthony San;
Sivakumar, Smruthy;
Vattathil, Selina;
Fowler, Jerry;
Vilar, Eduardo;
Scheet, Paul

Publication type:

Article

methyLiftover: cross-platform DNA methylation data integration.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2517, doi. 10.1093/bioinformatics/btw180

By:

Titus, Alexander J.;
Houseman, E. Andrés;
Johnson, Kevin C.;
Christensen, Brock C.

Publication type:

Article

Path2PPI: an R package to predict protein-protein interaction networks for a set of proteins.

Published in:

Bioinformatics, 2016, v. 32, n. 9, p. 1427, doi. 10.1093/bioinformatics/btv765

By:

Philipp, Oliver;
Osiewacz, Heinz D.;
Koch, Ina

Publication type:

Article

Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1238, doi. 10.1093/bioinformatics/btv748

By:

Sundfeld, Daniel;
Havgaard, Jakob H.;
de Melo, Alba C. M. A.;
Gorodkin, Jan

Publication type:

Article

Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 292, doi. 10.1093/bioinformatics/btv566

By:

Okonechnikov, Konstantin;
Conesa, Ana;
García-Alcalde, Fernando

Publication type:

Article

BamHash: a checksum program for verifying the integrity of sequence data.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 140, doi. 10.1093/bioinformatics/btv539

By:

Óskarsdóttir, Arna;
Másson, Gísli;
Melsted, Páll

Publication type:

Article

NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 142, doi. 10.1093/bioinformatics/btv540

By:

Leggett, Richard M.;
Heavens, Darren;
Caccamo, Mario;
Clark, Matthew D.;
Davey, Robert P.

Publication type:

Article

Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data.

Published in:

Bioinformatics, 2015, v. 31, n. 20, p. 3356, doi. 10.1093/bioinformatics/btv359

By:

Gupta, Namita T.;
Vander Heiden, Jason A.;
Uduman, Mohamed;
Gadala-Maria, Daniel;
Yaari, Gur;
Kleinstein, Steven H.

Publication type:

Article

IBiSS, a versatile and interactive tool for integrated sequence and 3D structure analysis of large macromolecular complexes.

Published in:

Bioinformatics, 2015, v. 31, n. 20, p. 3339, doi. 10.1093/bioinformatics/btv347

By:

Beinsteiner, Brice;
Michalon, Jonathan;
Klaholz, Bruno P.

Publication type:

Article

Investigating microbial co-occurrence patterns based on metagenomic compositional data.

Published in:

Bioinformatics, 2015, v. 31, n. 20, p. 3322, doi. 10.1093/bioinformatics/btv364

By:

Yuguang Ban;
Lingling An;
Hongmei Jiang

Publication type:

Article

Thresher: an improved algorithm for peak height thresholding of microbial community profiles.

Published in:

Bioinformatics, 2014, v. 30, n. 22, p. 3257, doi. 10.1093/bioinformatics/btu528

By:

Starke, Verena;
Steele, Andrew

Publication type:

Article

gCUP: rapid GPU-based HIV-1 co-receptor usage prediction for next-generation sequencing.

Published in:

Bioinformatics, 2014, v. 30, n. 22, p. 3272, doi. 10.1093/bioinformatics/btu535

By:

Olejnik, Michael;
Steuwer, Michel;
Gorlatch, Sergei;
Heider, Dominik

Publication type:

Article

SparkSeq: fast, scalable and cloud-ready tool for the interactive genomic data analysis with nucleotide precision.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2652

By:

Wiewiórka, Marek S.;
Messina, Antonio;
Pacholewska, Alicja;
Maffioletti, Sergio;
Gawrysiak, Piotr;
Okoniewski, Michał J.

Publication type:

Article

Tedna: a transposable element de novo assembler.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2656, doi. 10.1093/bioinformatics/btu365

By:

Zytnicki, Matthias;
Akhunov, Eduard;
Quesneville, Hadi

Publication type:

Article

CODOC: efficient access, analysis and compression of depth of coverage signals.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2676, doi. 10.1093/bioinformatics/btu362

By:

Popitsch, Niko

Publication type:

Article

Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2598, doi. 10.1093/bioinformatics/btu333

By:

Nueda, María José;
Tarazona, Sonia;
Conesa, Ana

Publication type:

Article

PEAR: a fast and accurate Illumina Paired-End reAd mergeR.

Published in:

Bioinformatics, 2014, v. 30, n. 5, p. 614, doi. 10.1093/bioinformatics/btt593

By:

Zhang, Jiajie;
Kobert, Kassian;
Flouri, Tomáš;
Stamatakis, Alexandros

Publication type:

Article

ELOPER: elongation of paired-end reads as a pre-processing tool for improved de novo genome assembly.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1455, doi. 10.1093/bioinformatics/btt169

By:

Silver, David H.;
Ben-Elazar, Shay;
Bogoslavsky, Alexei;
Yanai, Itai

Publication type:

Article

A support vector machine for identification of single-nucleotide polymorphisms from next-generation sequencing data.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1361, doi. 10.1093/bioinformatics/btt172

By:

O’Fallon, Brendan D.;
Wooderchak-Donahue, Whitney;
Crockett, David K.

Publication type:

Article

FishingCNV: a graphical software package for detecting rare copy number variations in exome-sequencing data.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1461, doi. 10.1093/bioinformatics/btt151

By:

Shi, Yuhao;
Majewski, Jacek

Publication type:

Article

AbCD: arbitrary coverage design for sequencing-based genetic studies.

Published in:

Bioinformatics, 2013, v. 29, n. 6, p. 799, doi. 10.1093/bioinformatics/btt041

By:

Kang, Jian;
Huang, Kuan-Chieh;
Xu, Zheng;
Wang, Yunfei;
Abecasis, Gonçalo R.;
Li, Yun

Publication type:

Article

ViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 649, doi. 10.1093/bioinformatics/btt011

By:

Li, Jing-Woei;
Wan, Raymond;
Yu, Chi-Shing;
Co, Ngai Na;
Wong, Nathalie;
Chan, Ting-Fung

Publication type:

Article

CLEVER: clique-enumerating variant finder.

Published in:

Bioinformatics, 2012, v. 28, n. 22, p. 2875, doi. 10.1093/bioinformatics/bts566

By:

Marschall, Tobias;
Costa, Ivan G.;
Canzar, Stefan;
Bauer, Markus;
Klau, Gunnar W.;
Schliep, Alexander;
Schönhuth, Alexander

Publication type:

Article

Mendel-GPU: haplotyping and genotype imputation on graphics processing units.

Published in:

Bioinformatics, 2012, v. 28, n. 22, p. 2979, doi. 10.1093/bioinformatics/bts536

By:

Chen, Gary K.;
Wang, Kai;
Stram, Alex H.;
Sobel, Eric M.;
Lange, Kenneth

Publication type:

Article

Read count approach for DNA copy number variants detection.

Published in:

Bioinformatics, 2012, v. 28, n. 4, p. 470, doi. 10.1093/bioinformatics/btr707

By:

Magi, Alberto;
Tattini, Lorenzo;
Pippucci, Tommaso;
Torricelli, Francesca;
Benelli, Matteo

Publication type:

Article

SEAL: a distributed short read mapping and duplicate removal tool.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2159, doi. 10.1093/bioinformatics/btr325

By:

Pireddu, Luca;
Leo, Simone;
Zanetti, Gianluigi

Publication type:

Article

An Independent Assessment of a Commercial Clinical Interpretation Software Indicates That Software Can Mitigate Variation in Human Assessment.

Published in:

Journal of Molecular Pathology, 2022, v. 3, n. 3, p. 125, doi. 10.3390/jmp3030012

By:

Fairley, Jennifer A.;
Deans, Zandra C.;
Treacy, Rebecca J. L.;
Grieg, Eilidh;
Bungartz, Kathryn;
Burton, Ruth;
Hayes, James;
Elkin, Sheryl K.

Publication type:

Article

Utilizing In-Silico Techniques for Synthesizing bDNA for Crop Disease Diagnosis.

Published in:

Annals of Agricultural Science Moshtohor, 2024, v. 62, n. 1, p. 1, doi. 10.21608/assjm.2024.280276.1273

By:

Zeama, Asmaa M. A.;
Refaat, Mohamed H.;
El-Garhy, Hoda A. S.;
Ibrahim, Sh. D.;
Foda, Mohamed F.

Publication type:

Article

Genotyping by sequencing reveals contrasting patterns of population structure, ecologically mediated divergence, and long‐distance dispersal in North American palms.

Published in:

Ecology & Evolution (20457758), 2018, v. 8, n. 11, p. 5873, doi. 10.1002/ece3.4125

By:

Klimova, Anastasia;
Ortega‐rubio, Alfredo;
Vendrami, David L. J.;
Hoffman, Joseph I.

Publication type:

Article

Software Choice and Sequencing Coverage Can Impact Plastid Genome Assembly–A Case Study in the Narrow Endemic Calligonum bakuense.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.779830

By:

Giorgashvili, Eka;
Reichel, Katja;
Caswara, Calvinna;
Kerimov, Vuqar;
Borsch, Thomas;
Gruenstaeudl, Michael

Publication type:

Article

An amplicon-based nanopore sequencing workflow for rapid tracking of avian influenza outbreaks, France, 2020-2022.

Published in:

Frontiers in Cellular & Infection Microbiology, 2024, p. 1, doi. 10.3389/fcimb.2024.1257586

By:

Croville, Guillaume;
Walch, Mathilda;
Sécula, Aurélie;
Lèbre, Laetitia;
Silva, Sonia;
Filaire, Fabien;
Guérin, Jean-Luc

Publication type:

Article

IMPROVING THE SOLUTION COMPLEXITY OF THE SCHEDULING PROBLEM WITH DEADLINES: A GENERAL TECHNIQUE.

Published in:

RAIRO -- Operations Research, 2016, v. 50, n. 4/5, p. 681, doi. 10.1051/ro/2016021

By:

ELALOUF, AMIR;
LEVNER, EUGENE

Publication type:

Article

Editorial.

Published in:: BMS: Bulletin de Methodologie Sociologique (Sage Publications Ltd.), 2012, v. 116, n. 1, p. 3, doi. 10.1177/0759106312454630
Publication type:: Article

Human Mitochondrial Control Region and mtGenome: Design and Forensic Validation of NGS Multiplexes, Sequencing and Analytical Software.

Published in:

Genes, 2021, v. 12, n. 4, p. 599, doi. 10.3390/genes12040599

By:

Holt, Cydne L.;
Stephens, Kathryn M.;
Walichiewicz, Paulina;
Fleming, Keenan D.;
Forouzmand, Elmira;
Wu, Shan-Fu

Publication type:

Article