Works matching DE "TRANSCRIPTIONAL repressor CTCF"

Results: 113

Characterizing leader sequences of CRISPR loci.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i576, doi. 10.1093/bioinformatics/btw454

By:

Alkhnbashi, Omer S.;
Shah, Shiraz A.;
Garrett, Roger A.;
Saunders, Sita J.;
Costa, Fabrizio;
Backofen, Rolf

Publication type:

Article

MicroRNA‑153 suppresses human laryngeal squamous cell carcinoma migration and invasion by targeting the SNAI1 gene.

Published in:

Oncology Letters, 2018, v. 16, n. 4, p. 5075, doi. 10.3892/ol.2018.9302

By:

Zhang, Binbin;
Fu, Tao;
Zhang, Lun

Publication type:

Article

Metabolic engineering of E. coli for the production of O-succinyl-L-homoserine with high yield.

Published in:

3 Biotech, 2018, v. 8, n. 7, p. 1, doi. 10.1007/s13205-018-1332-x

By:

Huang, Jian-Feng;
Zhang, Bo;
Shen, Zhen-Yang;
Liu, Zhi-Qiang;
Zheng, Yu-Guo

Publication type:

Article

Disruption of CTCF/cohesin-mediated high-order chromatin structures by DNA methylation downregulates PTGS2 expression.

Published in:

Oncogene, 2015, v. 34, n. 45, p. 5677, doi. 10.1038/onc.2015.17

By:

Kang, J Y;
Song, S H;
Yun, J;
Jeon, M S;
Kim, H P;
Han, S W;
Kim, T Y

Publication type:

Article

OFP1 Interaction with ATH1 Regulates Stem Growth, Flowering Time and Flower Basal Boundary Formation in Arabidopsis.

Published in:

Genes, 2018, v. 9, n. 8, p. 399, doi. 10.3390/genes9080399

By:

Sun, Lili;
Zhang, Shuquan;
Xie, Dongwei;
Liang, Chunbo;
Huang, Wengong;
Fan, Lijuan;
Fang, Yuyan;
Zhang, Liguo;
Chang, Ying;
Zhang, Xiaofei

Publication type:

Article

Making Sense of the Tangle: Insights into Chromatin Folding and Gene Regulation.

Published in:

Genes, 2016, v. 7, n. 10, p. 71, doi. 10.3390/genes7100071

By:

Ill-Min Chung;
Ketharnathan, Sarada;
Seung-Hyun Kim;
Thiruvengadam, Muthu;
Rani, Mari Kavitha;
Rajakumar, Govindasamy

Publication type:

Article

RGG boxes within the TET/FET family of RNA-binding proteins are functionally distinct.

Published in:

Transcription (2154-1264), 2016, v. 7, n. 4, p. 141, doi. 10.1080/21541264.2016.1183071

By:

Chau, Bess Ling;
Ng, King Pan;
Li, Kim K C;
Lee, Kevin A.W.

Publication type:

Article

CTCF regulates NELF, DSIF and P-TEFb recruitment during transcription.

Published in:

Transcription (2154-1264), 2015, v. 6, n. 5, p. 79, doi. 10.1080/21541264.2015.1095269

By:

Laitem, Clélia;
Zaborowska, Justyna;
Tellier, Michael;
Yamaguchi, Yuki;
Cao, Qingfu;
Egloff, Sylvain;
Handa, Hiroshi;
Murphy, Shona

Publication type:

Article

Discovering a binary CTCF code with a little help from BORIS.

Published in:

Nucleus (1949-1034), 2018, v. 9, n. 1, p. 33, doi. 10.1080/19491034.2017.1394536

By:

Lobanenkov, Victor V.;
Zentner, Gabriel E.

Publication type:

Article

Extrusion without a motor: a new take on the loop extrusion model of genome organization.

Published in:

Nucleus (1949-1034), 2018, v. 9, n. 1, p. 95, doi. 10.1080/19491034.2017.1421825

By:

Brackley, C. A.;
Johnson, J.;
Michieletto, D.;
Morozov, A. N.;
Nicodemi, M.;
Cook, P. R.;
Marenduzzo, D.

Publication type:

Article

Recent evidence that TADs and chromatin loops are dynamic structures.

Published in:

Nucleus (1949-1034), 2018, v. 9, n. 1, p. 20, doi. 10.1080/19491034.2017.1389365

By:

Hansen, Anders S.;
Cattoglio, Claudia;
Darzacq, Xavier;
Tjian, Robert

Publication type:

Article

The connection between BRG1, CTCF and topoisomerases at TAD boundaries.

Published in:

Nucleus (1949-1034), 2017, v. 8, n. 2, p. 150, doi. 10.1080/19491034.2016.1276145

By:

Barutcu, A. Rasim;
Lian, Jane B.;
Stein, Janet L.;
Stein, Gary S.;
Imbalzano, Anthony N.

Publication type:

Article

Nucleoplasmic Lamin A/C and Polycomb group of proteins: An evolutionarily conserved interplay.

Published in:

Nucleus (1949-1034), 2016, v. 7, n. 2, p. 103, doi. 10.1080/19491034.2016.1157675

By:

Marullo, F.;
Cesarini, E.;
Antonelli, L.;
Gregoretti, F.;
Oliva, G.;
Lanzuolo, C.

Publication type:

Article

Specific cytoarchitectureal changes in hippocampal subareas in daDREAM mice.

Published in:

Molecular Brain, 2016, v. 9, p. 1, doi. 10.1186/s13041-016-0204-8

By:

Mellström, Britt;
Kastanauskaite, Asta;
Knafo, Shira;
Gonzalez, Paz;
Dopazo, Xose M.;
Ruiz-Nuño, Ana;
Jefferys, John G. R.;
Min Zhuo;
Bliss, Tim V. P.;
Naranjo, Jose R.;
DeFelipe, Javier

Publication type:

Article

Neurodevelopmental disorder-associated ZBTB20 gene variants affect dendritic and synaptic structure.

Published in:

PLoS ONE, 2018, v. 13, n. 10, p. 1, doi. 10.1371/journal.pone.0203760

By:

Jones, Kelly A.;
Luo, Yue;
Dukes-Rimsky, Lynn;
Srivastava, Deepak P.;
Koul-Tewari, Richa;
Russell, Theron A.;
Shapiro, Lauren P.;
Srivastava, Anand K.;
Penzes, Peter

Publication type:

Article

Tethering of CHROMATOR and dCTCF proteins results in decompaction of condensed bands in the Drosophila melanogaster polytene chromosomes but does not affect their transcription and replication timing.

Published in:

PLoS ONE, 2018, v. 13, n. 4, p. 1, doi. 10.1371/journal.pone.0192634

By:

Pokholkova, Galina V.;
Demakov, Sergei A.;
Andreenkov, Oleg V.;
Andreenkova, Natalia G.;
Volkova, Elena I.;
Belyaeva, Elena S.;
Zhimulev, Igor F.

Publication type:

Article

Flipping the transcriptional switch from myelin inhibition to axon growth in the CNS.

Published in:

Frontiers in Molecular Neuroscience, 2015, v. 8, p. 1, doi. 10.3389/fnmol.2015.00034

By:

Carmel, Jason B.;
Young, Wise;
Hart, Ronald P.

Publication type:

Article

Corrigendum: Transcriptional regulator PRDM12 is essential for human pain perception.

Published in:

Nature Genetics, 2015, v. 47, n. 8, p. 962, doi. 10.1038/ng0815-962b

By:

Chen, Ya-Chun;
Auer-Grumbach, Michaela;
Matsukawa, Shinya;
Zitzelsberger, Manuela;
Themistocleous, Andreas C;
Strom, Tim M;
Samara, Chrysanthi;
Moore, Adrian W;
Cho, Lily Ting-Yin;
Young, Gareth T;
Weiss, Caecilia;
Schabhüttl, Maria;
Stucka, Rolf;
Schmid, Annina B;
Parman, Yesim;
Graul-Neumann, Luitgard;
Heinritz, Wolfram;
Passarge, Eberhard;
Watson, Rosemarie M;
Hertz, Jens Michael

Publication type:

Article

Global Analysis of the Fungal Microbiome in Cystic Fibrosis Patients Reveals Loss of Function of the Transcriptional Repressor Nrg1 as a Mechanism of Pathogen Adaptation.

Published in:

PLoS Pathogens, 2015, v. 11, n. 11, p. 1, doi. 10.1371/journal.ppat.1005308

By:

Kim, Sang Hu;
Clark, Shawn T.;
Surendra, Anuradha;
Copeland, Julia K.;
Wang, Pauline W.;
Ammar, Ron;
Collins, Cathy;
Tullis, D. Elizabeth;
Nislow, Corey;
Hwang, David M.;
Guttman, David S.;
Cowen, Leah E.

Publication type:

Article

Inclusion of BLIMP-1 effector regulatory T cells improves the Immunoscore in a cohort of New Zealand colorectal cancer patients: a pilot study.

Published in:

Cancer Immunology, Immunotherapy, 2017, v. 66, n. 4, p. 515, doi. 10.1007/s00262-016-1951-1

By:

Ward-Hartstonge, Kirsten;
McCall, John;
McCulloch, Timothy;
Kamps, Ann-Kristin;
Girardin, Adam;
Cretney, Erika;
Munro, Fran;
Kemp, Roslyn

Publication type:

Article

Transcription profile analysis of the endometrium revealed molecular markers of the personalized ‘window of implantation’ during in vitro fertilization.

Published in:

Gynecological Endocrinology, 2017, v. 33, p. 22, doi. 10.1080/09513590.2017.1404236

By:

Burmenskaya, O. V.;
Bozhenko, V. K.;
Smolnikova, V. Yu.;
Kalinina, E. A.;
Korneeva, I. E.;
Donnikov, A. E.;
Beyk, Е. P.;
Naumov, V. A.;
Aleksandrova, N. V.;
Borovikov, P. I.;
Trofimov, D. Y.

Publication type:

Article

Loss of the transcriptional repressor Rev-erbα upregulates metabolism and proliferation in cultured mouse embryonic fibroblasts.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-91516-5

By:

Gillis, Sean P.;
Yao, Hongwei;
Rizal, Salu;
Maeda, Hajime;
Chang, Julia;
Dennery, Phyllis A.

Publication type:

Article

Neuronal fate specification by the Dbx1 transcription factor is linked to the evolutionary acquisition of a novel functional domain.

Published in:

EvoDevo, 2016, v. 7, p. 1, doi. 10.1186/s13227-016-0055-5

By:

Karaz, Sonia;
Courgeon, Maximilien;
Lepetit, Hélène;
Bruno, Eugenia;
Pannone, Raimondo;
Tarallo, Andrea;
Thouzé, France;
Kerner, Pierre;
Vervoort, Michel;
Causeret, Frédéric;
Pierani, Alessandra;
D'Onofrio, Giuseppe

Publication type:

Article

CTCF-mediated Chromatin Loop for the Posterior Hoxc Gene Expression in MEF Cells.

Published in:

IUBMB Life, 2016, v. 68, n. 6, p. 436, doi. 10.1002/iub.1504

By:

Min, Hyehyun;
Kong, Kyoung‐Ah;
Lee, Ji‐Yeon;
Hong, Chang‐Pyo;
Seo, Seong‐Hye;
Roh, Tae‐Young;
Bae, Sun Sik;
Kim, Myoung Hee

Publication type:

Article

Characterization of redox-active cysteine residues of persulfide-responsive transcriptional repressor SqrR.

Published in:

Communicative & Integrative Biology, 2017, v. 10, n. 4, p. 1, doi. 10.1080/19420889.2017.1329786

By:

Shimizu, Takayuki;
Masuda, Shinji

Publication type:

Article

Transcriptional repressor REST drives lineage stage–specific chromatin compaction at Ptch1 and increases AKT activation in a mouse model of medulloblastoma.

Published in:

Science Signaling, 2019, v. 12, n. 565, p. N.PAG, doi. 10.1126/scisignal.aan8680

By:

Dobson, Tara H. W.;
Tao, Rong-Hua;
Swaminathan, Jyothishmathi;
Maegawa, Shinji;
Shaik, Shavali;
Bravo-Alegria, Javiera;
Sharma, Ajay;
Kennis, Bridget;
Yang, Yanwen;
Callegari, Keri;
Haltom, Amanda R.;
Taylor, Pete;
Kogiso, Mari;
Qi, Lin;
Khatua, Soumen;
Goldman, Stewart;
Lulla, Rishi R.;
Fangusaro, Jason;
MacDonald, Tobey J.;
Li, Xiao-Nan

Publication type:

Article

Activation of the alpha-globin gene expression correlates with dramatic upregulation of nearby non-globin genes and changes in local and large-scale chromatin spatial structure.

Published in:

Epigenetics & Chromatin, 2017, v. 10, p. 1, doi. 10.1186/s13072-017-0142-4

By:

Ulianov, Sergey V.;
Galitsyna, Aleksandra A.;
Flyamer, Ilya M.;
Golov, Arkadiy K.;
Khrameeva, Ekaterina E.;
Imakaev, Maxim V.;
Abdennur, Nezar A.;
Gelfand, Mikhail S.;
Gavrilov, Alexey A.;
Razin, Sergey V.

Publication type:

Article

Links between DNA methylation and nucleosome occupancy in the human genome.

Published in:

Epigenetics & Chromatin, 2017, v. 10, p. 1, doi. 10.1186/s13072-017-0125-5

By:

Collings, Clayton K.;
Anderson, John N.

Publication type:

Article

A Comparison of Ci/Gli Activity as Regulated by Sufu in Drosophila and Mammalian Hedgehog Response.

Published in:

PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0135804

By:

Oh, Sekyung;
Kato, Masaki;
Zhang, Chi;
Guo, Yurong;
Beachy, Philip A.

Publication type:

Article

Exploring the changing landscape of cell-to-cell variation after CTCF knockdown via single cell RNA-seq.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6379-5

By:

Wang, Wei;
Ren, Gang;
Hong, Ni;
Jin, Wenfei

Publication type:

Article

CTCF and Sgfl1 proteins form alternative complexes with ENY2 proteins.

Published in:

Doklady Biochemistry & Biophysics, 2016, v. 468, n. 1, p. 180, doi. 10.1134/S1607672916030054

By:

Bonchuk, A.;
Georgiev, P.;
Maksimenko, O.

Publication type:

Article

A Zinc Finger Transcriptional Repressor Confers Pleiotropic Effects on Rice Growth and Drought Tolerance by Down-Regulating Stress-Responsive Genes.

Published in:

Plant & Cell Physiology, 2018, v. 59, n. 10, p. 2129, doi. 10.1093/pcp/pcy133

By:

Yuan, Xi;
Huang, Peng;
Wang, Ruqin;
Li, Haoyuan;
Lv, Xueqing;
Duan, Min;
Tang, Haijuan;
Zhang, Hongsheng;
Huang, Ji

Publication type:

Article

Assessing the Role of ETHYLENE RESPONSE FACTOR Transcriptional Repressors in Salicylic Acid-Mediated Suppression of Jasmonic Acid-Responsive Genes.

Published in:

Plant & Cell Physiology, 2017, v. 58, n. 2, p. 266, doi. 10.1093/pcp/pcw187

By:

Caarls, Lotte;
Van der Does, Dieuwertje;
Hickman, Richard;
Jansen, Wouter;
Van Verk, Marcel C.;
Proietti, Silvia;
Lorenzo, Oscar;
Solano, Roberto;
Pieterse, Corné M. J.;
Van Wees, Saskia C. M.

Publication type:

Article

Drought-Up-Regulated TaNAC69-1 is a Transcriptional Repressor of TaSHY2 and TaIAA7, and Enhances Root Length and Biomass in Wheat.

Published in:

Plant & Cell Physiology, 2016, v. 57, n. 10, p. 2076, doi. 10.1093/pcp/pcw126

By:

Dandan Chen;
Richardson, Terese;
Shoucheng Chai;
McIntyre, C. Lynne;
Rae, Anne L.;
Gang-Ping Xue

Publication type:

Article

Expression profile and promoter analysis of HEPIS.

Published in:

Experimental & Therapeutic Medicine, 2018, v. 15, n. 1, p. 569, doi. 10.3892/etm.2017.5374

By:

Hu, Fen;
Zhang, Yunfeng

Publication type:

Article

Ets-2 Acts As a Transcriptional Repressor of the Human Immunodeficiency Virus Type 1 through Binding to a Repressor--Activator Target Sequence of 5'-LTR.

Published in:

Frontiers in Immunology, 2018, p. 1, doi. 10.3389/fimmu.2017.01924

By:

Panagoulias, Ioannis;
Karagiannis, Fotios;
Aggeletopoulou, Ioanna;
Georgakopoulos, Tassos;
Argyropoulos, Christos P.;
Akinosoglou, Karolina;
Gogos, Charalambos;
Skoutelis, Athanasios;
Mouzaki, Athanasia

Publication type:

Article

Control of directionality of chromatin folding for the inter- and intra-domain contacts at the Tfap2c–Bmp7 locus.

Published in:

Epigenetics & Chromatin, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13072-018-0221-1

By:

Tsujimura, Taro;
Takase, Osamu;
Yoshikawa, Masahiro;
Sano, Etsuko;
Hayashi, Matsuhiko;
Takato, Tsuyoshi;
Toyoda, Atsushi;
Okano, Hideyuki;
Hishikawa, Keiichi

Publication type:

Article

Downregulation of Spermine Augments Dendritic Persistent Sodium Currents and Synaptic Integration after Status Epilepticus.

Published in:

Journal of Neuroscience, 2015, v. 35, n. 46, p. 15240, doi. 10.1523/JNEUROSCI.0493-15.2015

By:

Royeck, Michel;
Kelly, Tony;
Opitz, Thoralf;
Otte, David-Marian;
Rennhack, Andreas;
Woitecki, Anne;
Pitsch, Julika;
Becker, Albert;
Schoch, Susanne;
Kaupp, Ulrich Benjamin;
Yaari, Yoel;
Zimmer, Andreas;
Beck, Heinz

Publication type:

Article

Genome-Wide Binding of Posterior HOXA/D Transcription Factors Reveals Subgrouping and Association with CTCF.

Published in:

PLoS Genetics, 2017, v. 13, n. 1, p. 1, doi. 10.1371/journal.pgen.1006567

By:

Andrey, Guillaume;
Jerković, Ivana;
Ibrahim, Daniel M.;
Mundlos, Stefan;
Hecht, Jochen;
Robinson, Peter N.;
Hansen, Peter;
Haas, Stefan;
Janetzki, Catrin;
González Navarrete, Irene

Publication type:

Article

Correction: Of Rings and Rods: Regulating Cohesin Entrapment of DNA to Generate Intra- and Intermolecular Tethers.

Published in:

2016

By:

Skibbens, Robert V.

Publication type:

Correction Notice

Correction: The Chromatin Remodelling Enzymes SNF2H and SNF2L Position Nucleosomes adjacent to CTCF and Other Transcription Factors.

Published in:

2016

By:

null, null

Publication type:

Correction Notice

The Chromatin Remodelling Enzymes SNF2H and SNF2L Position Nucleosomes adjacent to CTCF and Other Transcription Factors.

Published in:

PLoS Genetics, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pgen.1005940

By:

Wiechens, Nicola;
Singh, Vijender;
Gkikopoulos, Triantaffyllos;
Schofield, Pieta;
Rocha, Sonia;
Owen-Hughes, Tom

Publication type:

Article

Arabidopsis Flower and Embryo Developmental Genes are Repressed in Seedlings by Different Combinations of Polycomb Group Proteins in Association with Distinct Sets of Cis-regulatory Elements.

Published in:

PLoS Genetics, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pgen.1005771

By:

Wang, Hua;
Liu, Chunmei;
Cheng, Jingfei;
Liu, Jian;
Zhang, Lei;
He, Chongsheng;
Shen, Wen-Hui;
Jin, Hong;
Xu, Lin;
Zhang, Yijing

Publication type:

Article

Sex Chromosomes Do It Differently.

Published in:

PLoS Biology, 2016, v. 14, n. 10, p. 1, doi. 10.1371/journal.pbio.2001096

By:

Richardson, Lauren A.

Publication type:

Article

Suppression of Meiotic Recombination by CENP-B Homologs in Schizosaccharomyces pombe.

Published in:

Genetics, 2015, v. 201, n. 3, p. 897, doi. 10.1534/genetics.115.179465

By:

Johansen, Peter;
Cam, Hugh P.

Publication type:

Article

ZNF143 is involved in CTCF-mediated chromatin interactions by cooperation with cohesin and other partners.

Published in:

Molecular Biology, 2016, v. 50, n. 3, p. 431, doi. 10.1134/S0026893316030031

By:

Ye, B.-Y.;
Shen, W.-L.;
Wang, D.;
Li, P.;
Zhang, Z.;
Shi, M.-L.;
Zhang, Y.;
Zhang, F.-X.;
Zhao, Z.-H.

Publication type:

Article

A genetic biosensor for identification of transcriptional repressors of target promoters.

Published in:

Scientific Reports, 2015, p. 15887, doi. 10.1038/srep15887

By:

Wang, Weishan;
Li, Xiao;
Li, Yue;
Li, Shanshan;
Fan, Keqiang;
Yang, Keqian

Publication type:

Article

Transcriptional repression by the HDAC4-RelB-p52 complex regulates multiple myeloma survival and growth.

Published in:

Scientific Reports, 2015, p. 8428, doi. 10.1038/ncomms9428

By:

Vallabhapurapu, Subrahmanya D.;
Noothi, Sunil K.;
Pullum, Derek A.;
Lawrie, Charles H.;
Pallapati, Rachel;
Potluri, Veena;
Kuntzen, Christian;
Khan, Sohaib;
Plas, David R.;
Orlowski, Robert Z.;
Chesi, Marta;
Kuehl, W. Michael;
Bergsagel, P. Leif;
Karin, Michael;
Vallabhapurapu, Sivakumar

Publication type:

Article

Dynamic subnuclear relocalisation of WRKY40 in response to Abscisic acid in Arabidopsis thaliana.

Published in:

Scientific Reports, 2015, p. 13369, doi. 10.1038/srep13369

By:

Geilen, Katja;
Böhmer, Maik

Publication type:

Article

BnaA.bZIP1 Negatively Regulates a Novel Small Peptide Gene, BnaC.SP6, Involved in Pollen Activity.

Published in:

Frontiers in Plant Science, 2017, p. 1, doi. 10.3389/fpls.2017.02117

By:

Xuanpeng Wang;
Xin Li;
Mengmeng Li;
Jing Wen;
Bin Yi;
Jinxiong Shen;
Chaozhi Ma;
Tingdong Fu;
Jinxing Tu

Publication type:

Article