Works matching DE "METAGENOMICS"

Results: 5000

Impact of microbiological molecular methodologies on adaptive sampling using nanopore sequencing in metagenomic studies.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00704-7

By:

Herbert, Josephine;
Thompson, Stanley;
Beckett, Angela H.;
Robson, Samuel C.

Publication type:

Article

Metagenomic and Molecular Detection of Novel Fecal Viruses in Free-Ranging Agile Wallabies.

Published in:

EcoHealth, 2023, v. 20, n. 4, p. 427, doi. 10.1007/s10393-023-01659-2

By:

Okoh, God'spower Richard;
Ariel, Ellen;
Whitmore, David;
Horwood, Paul F.

Publication type:

Article

Metagenomic Analysis Reveals Previously Undescribed Bat Coronavirus Strains in Eswatini.

Published in:

EcoHealth, 2021, v. 18, n. 4, p. 421, doi. 10.1007/s10393-021-01567-3

By:

Shapiro, Julie Teresa;
Mollerup, Sarah;
Jensen, Randi Holm;
Olofsson, Jill Katharina;
Nguyen, Nam-phuong D.;
Hansen, Thomas Arn;
Vinner, Lasse;
Monadjem, Ara;
McCleery, Robert A.;
Hansen, Anders J.

Publication type:

Article

Where Next for Microbiome Research?

Published in:

PLoS Biology, 2015, v. 13, n. 1, p. 1, doi. 10.1371/journal.pbio.1002050

By:

Waldor, Matthew K.;
Tyson, Gene;
Borenstein, Elhanan;
Ochman, Howard;
Moeller, Andrew;
Finlay, B. Brett;
Kong, Heidi H.;
Gordon, Jeffrey I.;
Nelson, Karen E.;
Dabbagh, Karim;
Smith, Hamilton

Publication type:

Article

Minimizing the deep coalescence cost.

Published in:

Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 5, p. N.PAG, doi. 10.1142/S0219720018400218

By:

Dąbkowski, Dawid;
Tabaszewski, Paweł;
Górecki, Paweł

Publication type:

Article

Metagenome sequence clustering with hash-based canopies.

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 6, p. -1, doi. 10.1142/S0219720017400066

By:

Rahman, Mohammad Arifur;
LaPierre, Nathan;
Rangwala, Huzefa;
Barbara, Daniel

Publication type:

Article

Introduction to selected papers from the 8th International Conference on Bioinformatics and Computational Biology (BICOB 2016).

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 3, p. -1, doi. 10.1142/S0219720017020024

By:

Haspel, Nurit;
Ioerger, Thomas;
Al-Mubaid, Hisham

Publication type:

Article

An accurate and fast alignment-free method for profiling microbial communities.

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 3, p. -1, doi. 10.1142/S0219720017400017

By:

Pham, Diem-Trang;
Gao, Shanshan;
Phan, Vinhthuy

Publication type:

Article

Grid-Assembly: An oligonucleotide composition-based partitioning strategy to aid metagenomic sequence assembly.

Published in:

Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 3, p. -1, doi. 10.1142/S0219720015410048

By:

Ghosh, Tarini Shankar;
Mehra, Varun;
Mande, Sharmila S.

Publication type:

Article

Comparative metagenome analysis of an Alaskan glacier.

Published in:

Journal of Bioinformatics & Computational Biology, 2014, v. 12, n. 2, p. -1, doi. 10.1142/S0219720014410030

By:

Choudhari, Sulbha;
Lohia, Ruchi;
Grigoriev, Andrey

Publication type:

Article

LARGE-SCALE METAGENOMIC SEQUENCE CLUSTERING ON MAP-REDUCE CLUSTERS.

Published in:

Journal of Bioinformatics & Computational Biology, 2013, v. 11, n. 1, p. -1, doi. 10.1142/S0219720013400015

By:

YANG, XIAO;
ZOLA, JAROSLAW;
ALURU, SRINIVAS

Publication type:

Article

METAGENOMIC TAXONOMIC CLASSIFICATION USING EXTREME LEARNING MACHINES.

Published in:

Journal of Bioinformatics & Computational Biology, 2012, v. 10, n. 5, p. -1, doi. 10.1142/S0219720012500151

By:

RASHEED, ZEEHASHAM;
RANGWALA, HUZEFA

Publication type:

Article

An Atypical Naturally Split Intein Engineered for Highly Efficient Protein Labeling.

Published in:

Angewandte Chemie, 2014, v. 126, n. 5, p. 1330, doi. 10.1002/ange.201307969

By:

Thiel, Ilka V.;
Volkmann, Gerrit;
Pietrokovski, Shmuel;
Mootz, Henning D.

Publication type:

Article

Challenges of metagenomics and single-cell genomics approaches for exploring cyanobacterial diversity.

Published in:

Photosynthesis Research, 2015, v. 126, n. 1, p. 135, doi. 10.1007/s11120-014-0066-9

By:

Davison, Michelle;
Hall, Eric;
Zare, Richard;
Bhaya, Devaki

Publication type:

Article

High-throughput amplicon sequencing demonstrates extensive diversity of xylanase genes in the sediment of soda lake Dabusu.

Published in:

Biotechnology Letters, 2019, v. 41, n. 3, p. 409, doi. 10.1007/s10529-019-02646-w

By:

Wang, Guozeng;
Ren, Yaxin;
Ng, Tzi Bun;
Streit, Wolfgang R.;
Ye, Xiuyun

Publication type:

Article

Characterization of an inhibitor-resistant endo-1,4-β-mannanase from the gut microflora metagenome of Hermetia illucens.

Published in:

Biotechnology Letters, 2018, v. 40, n. 9/10, p. 1377, doi. 10.1007/s10529-018-2596-2

By:

Song, Jaeeun;
Kim, Su-Yeon;
Kim, Dae-Hyuk;
Lee, Young-Seok;
Sim, Joon-Soo;
Hahn, Bum-Soo;
Lee, Chang-Muk

Publication type:

Article

Direct cloning, expression of a thermostable xylanase gene from the metagenomic DNA of cow dung compost and enzymatic production of xylooligosaccharides from corncob.

Published in:

Biotechnology Letters, 2015, v. 37, n. 9, p. 1877, doi. 10.1007/s10529-015-1857-6

By:

Sun, Ming-zhe;
Zheng, Hong-chen;
Meng, Ling-cai;
Sun, Jun-she;
Song, Hui;
Bao, Yun-juan;
Pei, Hai-sheng;
Yan, Zheng;
Zhang, Xiu-qing;
Zhang, Jing-sheng;
Liu, Yi-han;
Lu, Fu-ping

Publication type:

Article

New dioxygenase from metagenomic library from Brazilian soil: insights into antibiotic resistance and bioremediation.

Published in:

Biotechnology Letters, 2015, v. 37, n. 9, p. 1809, doi. 10.1007/s10529-015-1861-x

By:

Santos, Débora;
Istvan, Paula;
Noronha, Eliane;
Quirino, Betânia;
Krüger, Ricardo

Publication type:

Article

Cloning and characterization of a novel GH44 family endoglucanase from mangrove soil metagenomic library.

Published in:

Biotechnology Letters, 2014, v. 36, n. 8, p. 1701, doi. 10.1007/s10529-014-1531-4

By:

Mai, Zhimao;
Su, Hongfei;
Yang, Jian;
Huang, Sijun;
Zhang, Si

Publication type:

Article

Expression and characterization of a thermostable penicillin G acylase from an environmental metagenomic library.

Published in:

Biotechnology Letters, 2014, v. 36, n. 3, p. 617, doi. 10.1007/s10529-013-1403-3

By:

Zhang, Qian;
Xu, Hui;
Zhao, Jing;
Zeng, Runying

Publication type:

Article

Discovery of a novel esterase subfamily sharing an identified arm sequence (ArmEst) by gene-specific metagenomic PCR.

Published in:

Biotechnology Letters, 2013, v. 35, n. 11, p. 1937, doi. 10.1007/s10529-013-1293-4

By:

Zhang, Ao;
Zhao, Rong;
Jin, Peng;
Ma, Lifang;
Xiong, Xiaolong;
Xie, Tian;
Pei, Xiaolin;
Yu, Li;
Yin, Xiaopu;
Wang, Qiuyan

Publication type:

Article

Metagenomic cloning and characterization of Na/H antiporter genes taken from sediments in Chaerhan Salt Lake in China.

Published in:

Biotechnology Letters, 2013, v. 35, n. 4, p. 619, doi. 10.1007/s10529-012-1122-1

By:

Wang, Xiaoyu;
Xu, Feng;
Chen, Sanfeng

Publication type:

Article

Bioactive compounds synthesized by non-ribosomal peptide synthetases and type-I polyketide synthases discovered through genome-mining and metagenomics.

Published in:

Biotechnology Letters, 2012, v. 34, n. 8, p. 1393, doi. 10.1007/s10529-012-0919-2

By:

Nikolouli, Katerina;
Mossialos, Dimitris

Publication type:

Article

Life at extreme elevations on Atacama volcanoes: the closest thing to Mars on Earth?

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 8, p. 1389, doi. 10.1007/s10482-018-1066-0

By:

Schmidt, S. K.;
Gendron, E. M. S.;
Vincent, K.;
Solon, A. J.;
Sommers, P.;
Schubert, Z. R.;
Vimercati, L.;
Porazinska, D. L.;
Darcy, J. L.;
Sowell, P.

Publication type:

Article

Distinct taxonomic and functional composition of soil microbiomes along the gradient forest-restinga-mangrove in southeastern Brazil.

Published in:

Antonie van Leeuwenhoek, 2018, v. 111, n. 1, p. 101, doi. 10.1007/s10482-017-0931-6

By:

Mendes, Lucas William;
Tsai, Siu Mui

Publication type:

Article

Further analysis reveals new gut microbiome markers of type 2 diabetes mellitus.

Published in:

Antonie van Leeuwenhoek, 2017, v. 110, n. 3, p. 445, doi. 10.1007/s10482-016-0805-3

By:

Wang, Xiaokai;
Xu, Xiaoqiang;
Xia, Yan

Publication type:

Article

Applying functional metagenomics to search for novel lignocellulosic enzymes in a microbial consortium derived from a thermophilic composting phase of sugarcane bagasse and cow manure.

Published in:

Antonie van Leeuwenhoek, 2016, v. 109, n. 9, p. 1217, doi. 10.1007/s10482-016-0723-4

By:

Colombo, Lívia;
Oliveira, Marcelo;
Carneiro, Deisy;
Souza, Robson;
Alvim, Mariana;
Santos, Josenilda;
Silva, Cynthia;
Vidigal, Pedro;
Silveira, Wendel;
Passos, Flávia

Publication type:

Article

Characterisation of the bacterial community structures in the intestine of Lampetra morii.

Published in:

Antonie van Leeuwenhoek, 2016, v. 109, n. 7, p. 979, doi. 10.1007/s10482-016-0699-0

By:

Li, Yingying;
Xie, Wenfang;
Li, Qingwei

Publication type:

Article

Exploring the sheep rumen microbiome for carbohydrate-active enzymes.

Published in:

Antonie van Leeuwenhoek, 2015, v. 108, n. 1, p. 15, doi. 10.1007/s10482-015-0459-6

By:

Lopes, Lucas;
Souza Lima, André;
Taketani, Rodrigo;
Darias, Phillip;
Silva, Lília;
Romagnoli, Emiliana;
Louvandini, Helder;
Abdalla, Adibe;
Mendes, Rodrigo

Publication type:

Article

A novel d-amino acid oxidase from a contaminated agricultural soil metagenome and its characterization.

Published in:

Antonie van Leeuwenhoek, 2015, v. 107, n. 6, p. 1615, doi. 10.1007/s10482-015-0457-8

By:

Ou, Qian;
Liu, Yao;
Deng, Jie;
Chen, Gao;
Yang, Ying;
Shen, Peihong;
Wu, Bo;
Jiang, Chengjian

Publication type:

Article

Composition and predicted functional ecology of mussel-associated bacteria in Indonesian marine lakes.

Published in:

Antonie van Leeuwenhoek, 2015, v. 107, n. 3, p. 821, doi. 10.1007/s10482-014-0375-1

By:

Cleary, Daniel;
Becking, Leontine;
Polónia, Ana;
Freitas, Rossana;
Gomes, Newton

Publication type:

Article

Potential applications of gut microbiota to control human physiology.

Published in:

Antonie van Leeuwenhoek, 2013, v. 104, n. 5, p. 609, doi. 10.1007/s10482-013-0008-0

By:

Umu, Özgün;
Oostindjer, Marije;
Pope, Phillip;
Svihus, Birger;
Egelandsdal, Bjørg;
Nes, Ingolf;
Diep, Dzung

Publication type:

Article

Metagenomic Analysis of Bacterial Community and Isolation of Representative Strains from Vranjska Banja Hot Spring, Serbia.

Published in:

Microbial Ecology, 2023, v. 86, n. 4, p. 2344, doi. 10.1007/s00248-023-02242-6

By:

Malesevic, Milka;
Stanisavljevic, Nemanja;
Matijasevic, Danka;
Curcic, Jovana;
Tasic, Vukasin;
Tasic, Srdjan;
Kojic, Milan

Publication type:

Article

A Metagenomic Time-Series Approach to Assess the Ecological Stability of Microbial Mats in a Seasonally Fluctuating Environment.

Published in:

Microbial Ecology, 2023, v. 86, n. 4, p. 2252, doi. 10.1007/s00248-023-02231-9

By:

Madrigal-Trejo, David;
Sánchez-Pérez, Jazmín;
Espinosa-Asuar, Laura;
Valdivia-Anistro, Jorge A.;
Eguiarte, Luis E.;
Souza, Valeria

Publication type:

Article

A Metagenomic and Amplicon Sequencing Combined Approach Reveals the Best Primers to Study Marine Aerobic Anoxygenic Phototrophs.

Published in:

Microbial Ecology, 2023, v. 86, n. 3, p. 2161, doi. 10.1007/s00248-023-02220-y

By:

Gazulla, Carlota R.;
Cabello, Ana María;
Sánchez, Pablo;
Gasol, Josep M.;
Sánchez, Olga;
Ferrera, Isabel

Publication type:

Article

Correction to: Mediative Mechanism of Freezing/Thawing on Greenhouse Gas Emissions in an Inland Saline Alkaline Wetland: a Metagenomic Analysis.

Published in:

2023

By:

Zhang, Yupeng;
Liu, Fengqin;
Liang, Hong;
Gao, Dawen

Publication type:

Correction Notice

Mediative Mechanism of Freezing/Thawing on Greenhouse Gas Emissions in an Inland Saline-Alkaline Wetland: a Metagenomic Analysis.

Published in:

Microbial Ecology, 2023, v. 86, n. 2, p. 985, doi. 10.1007/s00248-022-02165-8

By:

Zhang, Yupeng;
Liu, Fengqin;
Liang, Hong;
Gao, Dawen

Publication type:

Article

Functional Redundancy in Bat Microbial Assemblage in the Presence of the White Nose Pathogen.

Published in:

Microbial Ecology, 2023, v. 86, n. 1, p. 713, doi. 10.1007/s00248-022-02098-2

By:

Grisnik, Matthew;
Grinath, Joshua B.;
Munafo Jr, John P.;
Walker, Donald M.

Publication type:

Article

An Environmental DNA Primer for Microbial and Restoration Ecology.

Published in:

Microbial Ecology, 2023, v. 85, n. 3, p. 796, doi. 10.1007/s00248-022-02168-5

By:

Tessler, Michael;
Cunningham, Seth W.;
Ingala, Melissa R.;
Warring, Sally D.;
Brugler, Mercer R.

Publication type:

Article

Metagenomics Unveils Microbial Diversity and Their Biogeochemical Roles in Water and Sediment of Thermokarst Lakes in the Yellow River Source Area.

Published in:

Microbial Ecology, 2023, v. 85, n. 3, p. 904, doi. 10.1007/s00248-022-02053-1

By:

Ren, Ze;
Ma, Kang;
Jia, Xuan;
Wang, Qing;
Zhang, Cheng;
Li, Xia

Publication type:

Article

The Epidermal Microbiome Within an Aggregation of Leopard Sharks (Triakis semifasciata) Has Taxonomic Flexibility with Gene Functional Stability Across Three Time-points.

Published in:

Microbial Ecology, 2023, v. 85, n. 2, p. 747, doi. 10.1007/s00248-022-01969-y

By:

Doane, Michael P.;
Johnson, Colton J.;
Johri, Shaili;
Kerr, Emma N.;
Morris, Megan M.;
Desantiago, Ric;
Turnlund, Abigail C.;
Goodman, Asha;
Mora, Maria;
Lima, Laís Farias Oliveira;
Nosal, Andrew P.;
Dinsdale, Elizabeth A.

Publication type:

Article

Metagenomic Analysis of Biochemical Passive Reactors During Acid Mine Drainage Bioremediation Reveals Key Co-selected Metabolic Functions.

Published in:

Microbial Ecology, 2022, v. 84, n. 2, p. 465, doi. 10.1007/s00248-021-01872-y

By:

Villegas-Plazas, Marcela;
Sanabria, Janeth;
Arbeli, Ziv;
Vasquez, Yaneth;
Roldan, Fabio;
Junca, Howard

Publication type:

Article

Metagenomics Analysis to Investigate the Microbial Communities and Their Functional Profile During Cyanobacterial Blooms in Lake Varese.

Published in:

Microbial Ecology, 2022, v. 83, n. 4, p. 850, doi. 10.1007/s00248-021-01914-5

By:

Sanseverino, Isabella;
Pretto, Patrizia;
António, Diana Conduto;
Lahm, Armin;
Facca, Chiara;
Loos, Robert;
Skejo, Helle;
Beghi, Andrea;
Pandolfi, Franca;
Genoni, Pietro;
Lettieri, Teresa

Publication type:

Article

Vaginal Microbiota: Age Dynamic and Ethnic Particularities of Algerian Women.

Published in:

Microbial Ecology, 2021, v. 82, n. 4, p. 1020, doi. 10.1007/s00248-020-01606-6

By:

Ouarabi, Liza;
Drider, Djamel;
Taminiau, Bernard;
Daube, Georges;
Bendali, Farida;
Lucau-Danila, Anca

Publication type:

Article

Community Organization and Metagenomics of Bacterial Assemblages Across Local Scale pH Gradients in Northern Forest Soils.

Published in:

Microbial Ecology, 2021, v. 81, n. 3, p. 758, doi. 10.1007/s00248-020-01613-7

By:

Yavitt, Joseph B.;
Roco, C. Armanda;
Debenport, Spencer J.;
Barnett, Samuel E.;
Shapleigh, James P.

Publication type:

Article

Sediment Plasmidome of the Gulfs of Kathiawar Peninsula and Arabian Sea: Insights Gained from Metagenomics Data.

Published in:

Microbial Ecology, 2021, v. 81, n. 2, p. 540, doi. 10.1007/s00248-020-01587-6

By:

Mootapally, Chandrashekar;
Mahajan, Mayur S.;
Nathani, Neelam M.

Publication type:

Article

Activity and Identification of Methanotrophic Bacteria in Arable and No-Tillage Soils from Lublin Region (Poland).

Published in:

Microbial Ecology, 2019, v. 77, n. 3, p. 701, doi. 10.1007/s00248-018-1248-3

By:

Szafranek-Nakonieczna, Anna;
Wolińska, Agnieszka;
Zielenkiewicz, Urszula;
Kowalczyk, Agnieszka;
Stępniewska, Zofia;
Błaszczyk, Mieczysław

Publication type:

Article

Sketching the Human Microbiome Biogeography with DAR (Diversity-Area Relationship) Profiles.

Published in:

Microbial Ecology, 2019, v. 77, n. 3, p. 821, doi. 10.1007/s00248-018-1245-6

By:

Ma, Zhanshan (Sam)

Publication type:

Article

From the High Arctic to the Equator: Do Soil Metagenomes Differ According to Our Expectations?

Published in:

Microbial Ecology, 2019, v. 77, n. 1, p. 168, doi. 10.1007/s00248-018-1215-z

By:

Kerfahi, Dorsaf;
Tripathi, Binu M.;
Dong, Ke;
Kim, Mincheol;
Kim, Hyoki;
Ferry Slik, J. W.;
Go, Rusea;
Adams, Jonathan M.

Publication type:

Article

Rapid Microbial Community Changes During Initial Stages of Pine Litter Decomposition.

Published in:

Microbial Ecology, 2019, v. 77, n. 1, p. 56, doi. 10.1007/s00248-018-1209-x

By:

Gołębiewski, Marcin;
Tarasek, Agata;
Sikora, Marcin;
Deja-Sikora, Edyta;
Tretyn, Andrzej;
Niklińska, Maria

Publication type:

Article