Works matching DE "VIRUS populations"

Results: 64

Diversity of Citrus tristeza virus populations in commercial grapefruit orchards in Southern Africa, determined using Illumina MiSeq technology.

Published in:

European Journal of Plant Pathology, 2017, v. 148, n. 2, p. 379, doi. 10.1007/s10658-016-1096-2

By:

Read, D.;
Pietersen, G.

Publication type:

Article

nextflu: real-time tracking of seasonal influenza virus evolution in humans.

Published in:

Bioinformatics, 2015, v. 31, n. 21, p. 3546, doi. 10.1093/bioinformatics/btv381

By:

Neher, Richard A.;
Bedford, Trevor

Publication type:

Article

VIRAPOPS: a forward simulator dedicated to rapidly evolved viral populations.

Published in:

Bioinformatics, 2014, v. 30, n. 4, p. 578, doi. 10.1093/bioinformatics/btt724

By:

Petitjean, Michel;
Vanet, Anne

Publication type:

Article

SYSTEMIC APPROACH TO STUDYING VIRUSES OF BACTERIA FROM ANTARCTIC SOIL BIOTOPES.

Published in:

Bulletin of Taras Shevchenko National University of Kyiv / Vestnik Kievskogo Nacional'Nogo Universiteta Imeni Tarasa Ševčenko, 2013, v. 65, n. 3, p. 42

By:

Mas, O.;
Andriychuk, O.;
Polischuk, V.

Publication type:

Article

Phylodynamics and evolutionary epidemiology of African swine fever p72-CVR genes in Eurasia and Africa.

Published in:

PLoS ONE, 2018, v. 13, n. 2, p. 1, doi. 10.1371/journal.pone.0192565

By:

Alkhamis, Moh A.;
Gallardo, Carmina;
Jurado, Cristina;
Soler, Alejandro;
Arias, Marisa;
Sánchez-Vizcaíno, José M.

Publication type:

Article

Genomic diversity and phylogeography of norovirus in China.

Published in:

BMC Medical Genomics, 2017, v. 10, p. 1, doi. 10.1186/s12920-017-0287-9

By:

Niu Qiao;
He Ren;
Lei Liu

Publication type:

Article

Towards an effective poliovirus laboratory containment strategy in Nigeria.

Published in:

2018

By:

Ticha, Johnson Muluh;
Matthew, Kolawole Olatunji;
Hamisu, Abdullahi Walla;
Fiona, Braka;
Mkanda, Pascal;
Nsubuga, Peter;
Tesfaye, Eberto;
Craig, Kehinde;
Andrew, Etsano;
Emelife, Obi;
Shuaib, Faisal;
Folasade, Akinkugbe;
Adeniji, Johnson;
Adamu, Usman;
Dallatu, Mohammed;
Oyeyinka, Geoffrey;
Brown, Holly;
Nnamah, Nwakasik;
Okwori, Joseph;
Chinedu, Chukwuike

Publication type:

journal article

Spalničky - reálná hrozba dnešní doby?

Published in:

Pediatrie pro Praxi, 2019, v. 20, n. 2, p. 82

By:

Kukrálová, Lenka;
Sedláček, Dalibor;
ŠvecováŠvecová, Mirka

Publication type:

Article

SNPer: An R Library for Quantitative Variant Analysis on Single Nucleotide Polymorphisms among Influenza Virus Populations.

Published in:

PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0122812

By:

Sangket, Unitsa;
Vijasika, Sukanya;
Noh, Hasnee;
Chantratita, Wasun;
Klungthong, Chonticha;
Yoon, In Kyu;
Fernandez, Stefan;
Rutvisuttinunt, Wiriya

Publication type:

Article

A Preliminary Study of Viral Metagenomics of French Bat Species in Contact with Humans: Identification of New Mammalian Viruses.

Published in:

PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0087194

By:

Dacheux, Laurent;
Cervantes-Gonzalez, Minerva;
Guigon, Ghislaine;
Thiberge, Jean-Michel;
Vandenbogaert, Mathias;
Maufrais, Corinne;
Caro, Valérie;
Bourhy, Hervé

Publication type:

Article

Inferring Short-Range Linkage Information from Sequencing Chromatograms.

Published in:

PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0081687

By:

Beggel, Bastian;
Neumann-Fraune, Maria;
Kaiser, Rolf;
Verheyen, Jens;
Lengauer, Thomas

Publication type:

Article

Expression of a Peroral Infection Factor Determines Pathogenicity and Population Structure in an Insect Virus.

Published in:

PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0078834

By:

Simón, Oihane;
Williams, Trevor;
Cerutti, Martine;
Caballero, Primitivo;
López-Ferber, Miguel

Publication type:

Article

Next-Generation Sequencing of HIV-1 RNA Genomes: Determination of Error Rates and Minimizing Artificial Recombination.

Published in:

PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0074249

By:

Di Giallonardo, Francesca;
Zagordi, Osvaldo;
Duport, Yannick;
Leemann, Christine;
Joos, Beda;
Künzli-Gontarczyk, Marzanna;
Bruggmann, Rémy;
Beerenwinkel, Niko;
Günthard, Huldrych F.;
Metzner, Karin J.

Publication type:

Article

Emergence and Phylodynamics of <i>Citrus tristeza virus</i> in Sicily, Italy.

Published in:

PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0066700

By:

Davino, Salvatore;
Willemsen, Anouk;
Panno, Stefano;
Davino, Mario;
Catara, Antonino;
Elena, Santiago F.;
Rubio, Luis

Publication type:

Article

Xenotransplantation literature update, November/December 2017.

Published in:

Xenotransplantation, 2018, v. 25, n. 1, p. 1, doi. 10.1111/xen.12389

By:

Taylor, Travis R.;
Burlak, Christopher

Publication type:

Article

The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens.

Published in:

Molecular Ecology, 2016, v. 25, n. 1, p. 42, doi. 10.1111/mec.13474

By:

Wilson, Benjamin A.;
Garud, Nandita R.;
Feder, Alison F.;
Assaf, Zoe J.;
Pennings, Pleuni S.

Publication type:

Article

On the relative roles of background selection and genetic hitchhiking in shaping human cytomegalovirus genetic diversity.

Published in:

Molecular Ecology, 2016, v. 25, n. 1, p. 403, doi. 10.1111/mec.13331

By:

Renzette, Nicholas;
Kowalik, Timothy F.;
Jensen, Jeffrey D.

Publication type:

Article

Association between living environment and human oral viral ecology.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 9, p. 1710, doi. 10.1038/ismej.2013.63

By:

Robles-Sikisaka, Refugio;
Ly, Melissa;
Boehm, Tobias;
Naidu, Mayuri;
Salzman, Julia;
Pride, David T

Publication type:

Article

Enumeration of total virioplankton and isolation of specific cyanophages from selected aquatic ecosystems in Goa, India.

Published in:

Current Science (00113891), 2018, v. 115, n. 11, p. 2147, doi. 10.18520/cs/v115/i11/2147-2150

By:

Noronha, Judith Miriam;
Mulla, Amara Begum;
Gauns, Manguesh U.;
Ghadi, Sanjeev C.

Publication type:

Article

Error correction and statistical analyses for intra-host comparisons of feline immunodeficiency virus diversity from high-throughput sequencing data.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0607-z

By:

Yang Liu;
Chiaromonte, Francesca;
Ross, Howard;
Malhotra, Raunaq;
Elleder, Daniel;
Poss, Mary

Publication type:

Article

Frequent Coinfection Reduces RNA Virus Population Genetic Diversity.

Published in:

Journal of Heredity, 2013, v. 104, n. 5, p. 704, doi. 10.1093/jhered/est038

By:

Dennehy, John J.;
Duffy, Siobain;
O’Keefe, Kara J.;
Edwards, Scott V.;
Turner, Paul E.

Publication type:

Article

Evolution of mutualism from parasitism in experimental virus populations.

Published in:

Evolution, 2018, v. 72, n. 3, p. 707, doi. 10.1111/evo.13440

By:

Shapiro, Jason W.;
Turner, Paul E.

Publication type:

Article

Dynamics of molecular evolution in RNA virus populations depend on sudden versus gradual environmental change.

Published in:

Evolution, 2017, v. 71, n. 4, p. 872, doi. 10.1111/evo.13193

By:

Morley, Valerie J.;
Turner, Paul E.

Publication type:

Article

The impact of HCV therapy in a high HIV-HCV prevalence population: A modeling study on people who inject drugs in Ho Chi Minh City, Vietnam.

Published in:

PLoS ONE, 2017, v. 12, n. 5, p. 1, doi. 10.1371/journal.pone.0177195

By:

Birger, Ruthie B.;
Le, Thuy;
Kouyos, Roger D.;
Grenfell, Bryan T.;
Hallett, Timothy B.

Publication type:

Article

Clinical Determinants of HIV-1B Between-Host Evolution and their Association with Drug Resistance in Pediatric Patients.

Published in:

PLoS ONE, 2016, v. 11, n. 12, p. 1, doi. 10.1371/journal.pone.0167383

By:

Pagán, Israel;
Rojas, Patricia;
Ramos, José Tomás;
Holguín, África

Publication type:

Article

Burden of Co-Infection: A Cost Analysis of Human Immunodeficiency Virus in a Commercially Insured Hepatitis C Virus Population.

Published in:

Infectious Diseases & Therapy, 2019, v. 8, n. 2, p. 219, doi. 10.1007/s40121-019-0240-7

By:

Mattingly II, T. Joseph;
Pandit, Neha S.;
Onukwugha, Eberechukwu

Publication type:

Article

Highly diverse recombining populations of Vibrio cholerae and Vibrio parahaemolyticus in French Mediterranean coastal lagoons.

Published in:

Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00708

By:

Esteves, Kévin;
Mosser, Thomas;
Aujoulat, Fabien;
Hervio-Heath, Dominique;
Monfort, Patrick;
Jumas-Bilak, Estelle;
Hahn, Martin W.;
Rochelle-Newall, Emma Jane

Publication type:

Article

Recombination Enhances HIV-1 Envelope Diversity by Facilitating the Survival of Latent Genomic Fragments in the Plasma Virus Population.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004625

By:

Immonen, Taina T.;
Conway, Jessica M.;
Romero-Severson, Ethan O.;
Perelson, Alan S.;
Leitner, Thomas

Publication type:

Article

Viral Quasispecies Assembly via Maximal Clique Enumeration.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003515

By:

Töpfer, Armin;
Marschall, Tobias;
Bull, Rowena A.;
Luciani, Fabio;
Schönhuth, Alexander;
Beerenwinkel, Niko

Publication type:

Article

Evidence for increased efficiency of virus transmission by populations of Mediterranean species of Bemisia tabaci with high Hamiltonella prevalence.

Published in:

Phytoparasitica, 2019, v. 47, n. 2, p. 293, doi. 10.1007/s12600-019-00729-y

By:

Bello, Vinicius Henrique;
Watanabe, Luís Fernando Maranho;
Santos, Beatriz Rosa;
Marubayashi, Julio Massaharu;
Yuki, Valdir Atsushi;
De Marchi, Bruno Rossitto;
Pavan, Marcelo Agenor;
Krause-Sakate, Renate

Publication type:

Article

Virus Entry by Endocytosis.

Published in:

Advances in Virology, 2013, p. 1, doi. 10.1155/2013/469538

By:

Nicola, Anthony V.;
Aguilar, Hector C.;
Mercer, Jason;
Ryckman, Brent;
Wiethoff, Christopher M.

Publication type:

Article

A BRANCHING PROCESS FOR VIRUS SURVIVAL.

Published in:

Journal of Applied Probability, 2012, v. 49, n. 3, p. 888, doi. 10.1239/jap/1346955342

By:

Cox, J. Theodore;
Schinazi, Rinaldo B.

Publication type:

Article

Precise Photoremovable Perturbation of a Virus-Host Interaction.

Published in:

Angewandte Chemie, 2017, v. 129, n. 15, p. 4298, doi. 10.1002/ange.201700683

By:

Erickson, Sarah B.;
Mukherjee, Raja;
Kelemen, Rachel E.;
Wrobel, Chester J. J.;
Cao, Xiaofu;
Chatterjee, Abhishek

Publication type:

Article

Stochastic Modeling and Simulation of Viral Evolution.

Published in:

Bulletin of Mathematical Biology, 2019, v. 81, n. 4, p. 1031, doi. 10.1007/s11538-018-00550-4

By:

Fabreti, Luiza Guimarães;
Castro, Diogo;
Gorzoni, Bruno;
Janini, Luiz Mario Ramos;
Antoneli, Fernando

Publication type:

Article

The Utility of Data Transformation for Alignment, De Novo Assembly and Classification of Short Read Virus Sequences.

Published in:

Viruses (1999-4915), 2019, v. 11, n. 5, p. 394, doi. 10.3390/v11050394

By:

Tapinos, Avraam;
Constantinides, Bede;
Phan, My V. T.;
Kouchaki, Samaneh;
Cotten, Matthew;
Robertson, David L.

Publication type:

Article

Retroviral Vectors for Analysis of Viral Mutagenesis and Recombination.

Published in:

Viruses (1999-4915), 2014, v. 6, n. 9, p. 3612, doi. 10.3390/v6093612

By:

Rawson, Jonathan M. O.;
Mansky, Louis M.

Publication type:

Article

Reactivation of Latent HIV-1 Expression by Engineered TALE Transcription Factors.

Published in:

PLoS ONE, 2016, v. 11, n. 3, p. 1, doi. 10.1371/journal.pone.0150037

By:

Perdigão, Pedro;
Gaj, Thomas;
Santa-Marta, Mariana;
IIIBarbas, Carlos F.;
Goncalves, Joao

Publication type:

Article

The Good, the Bad, and the Tiny: A Simple, Mechanistic-Probabilistic Model of Virus-Nutrient Colimitation in Microbes.

Published in:

PLoS ONE, 2015, v. 10, n. 11, p. 1, doi. 10.1371/journal.pone.0143299

By:

Cael, B. B.

Publication type:

Article

Creation of Functional Viruses from Non-Functional cDNA Clones Obtained from an RNA Virus Population by the Use of Ancestral Reconstruction.

Published in:

PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0140912

By:

Fahnøe, Ulrik;
Pedersen, Anders Gorm;
Dräger, Carolin;
Orton, Richard J;
Blome, Sandra;
Höper, Dirk;
Beer, Martin;
Rasmussen, Thomas Bruun

Publication type:

Article

Estimation of genetic diversity in viral populations from next generation sequencing data with extremely deep coverage.

Published in:

Algorithms for Molecular Biology, 2016, v. 11, p. 1, doi. 10.1186/s13015-016-0064-x

By:

Zukurov, Jean P.;
do Nascimento-Brito, Sieberth;
Volpini, Angela C.;
Oliveira, Guilherme C.;
Janini, Luiz Mario R.;
Antoneli, Fernando

Publication type:

Article

Comment on “Large Bottleneck Size in Cauliflower Mosaic Virus Populations during Host Plant Colonization” by Monsion et al. (2008).

Published in:

2016

By:

Thébaud, Gaël;
Michalakis, Yannis

Publication type:

Opinion

Link between the numbers of particles and variants founding new HIV-1 infections depends on the timing of transmission.

Published in:

Virus Evolution, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1093/ve/vey038

By:

Thompson, Robin N;
Wymant, Chris;
Spriggs, Rebecca A;
Raghwani, Jayna;
Fraser, Christophe;
Lythgoe, Katrina A

Publication type:

Article

Positive selection and recombination shaped the large genetic differentiation of Beet black scorch virus population.

Published in:

PLoS ONE, 2019, v. 14, n. 4, p. 1, doi. 10.1371/journal.pone.0215574

By:

Farzadfar, Shirin;
Pourrahim, Reza

Publication type:

Article

The population-level impact of HBV and its vaccination on HIV transmission dynamics.

Published in:

Mathematical Methods in the Applied Sciences, 2016, v. 39, n. 18, p. 5539, doi. 10.1002/mma.3941

By:

Ding, Pei;
Qiu, Zhipeng;
Li, Xuezhi

Publication type:

Article

Complete genome sequence of rice virus A, a new member of the family Tombusviridae.

Published in:

Archives of Virology, 2017, v. 162, n. 10, p. 3247, doi. 10.1007/s00705-017-3472-4

By:

Zhao, Fumei;
Baek, Dasom;
Igori, Davaajargal;
Bae, Ju;
Kim, Sang-Min;
Ra, Ji-Eun;
Park, Ki;
Lee, Bong;
Moon, Jae

Publication type:

Article

Genetically distinct genogroup IV norovirus strains identified in wastewater.

Published in:

2016

By:

Kitajima, Masaaki;
Rachmadi, Andri;
Iker, Brandon;
Haramoto, Eiji;
Gerba, Charles

Publication type:

Report

Molecular variation and expansion of a rice black-streaked dwarf virus population based on analysis of segment 1 in Jining, China.

Published in:

Archives of Virology, 2016, v. 161, n. 12, p. 3435, doi. 10.1007/s00705-016-3052-z

By:

Zhou, Yu;
Meng, Qingchang;
Chen, Yanping;
Wu, Jirong;
Hao, Zhuanfang;
Wang, Zhenhua;
Zhang, Degui;
Li, Mingshun;
Yong, Hongjun;
Zhang, Shihuang;
Li, Xinhai;
Weng, Jianfeng

Publication type:

Article

Some like it hot: citrus tristeza virus strains react differently to elevated temperature.

Published in:

2016

By:

Cowell, S.;
Harper, S.;
Dawson, W.

Publication type:

Report

Population genomics of dengue virus serotype 4: insights into genetic structure and evolution.

Published in:

Archives of Virology, 2016, v. 161, n. 8, p. 2133, doi. 10.1007/s00705-016-2886-8

By:

Waman, Vaishali;
Kasibhatla, Sunitha;
Kale, Mohan;
Kulkarni-Kale, Urmila

Publication type:

Article

Evolutionary features of influenza A/H5N1 virus populations in Egypt: poultry and human health implications.

Published in:

2016

By:

Naguib, Mahmoud;
Abdelwhab, E.;
Harder, Timm

Publication type:

Report