Works matching IS 27306151 AND DT 2023 AND VI 3 AND IP 1

Results: 130

Distribution and genomic variation of ammonia-oxidizing archaea in abyssal and hadal surface sediments.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00341-6

By:

Trouche, Blandine;
Schauberger, Clemens;
Bouderka, Feriel;
Auguet, Jean-Christophe;
Belser, Caroline;
Poulain, Julie;
Thamdrup, Bo;
Wincker, Patrick;
Arnaud-Haond, Sophie;
Glud, Ronnie N.;
Maignien, Loïs

Publication type:

Article

Benthic microbial biogeographic trends in the North Sea are shaped by an interplay of environmental drivers and bottom trawling effort.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00336-3

By:

Bonthond, Guido;
Beermann, Jan;
Gutow, Lars;
Neumann, Andreas;
Barboza, Francisco Rafael;
Desiderato, Andrea;
Fofonova, Vera;
Helber, Stephanie B.;
Khodami, Sahar;
Kraan, Casper;
Neumann, Hermann;
Rohde, Sven;
Schupp, Peter J.

Publication type:

Article

Nitrogen and sulfur metabolisms encoded in prokaryotic communities associated with sea ice algae.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00337-2

By:

Bellas, Christopher M.;
Campbell, Karley;
Tranter, Martyn;
Sánchez-Baracaldo, Patricia

Publication type:

Article

Carbohydrates and carbohydrate degradation gene abundance and transcription in Atlantic waters of the Arctic.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00324-7

By:

Priest, Taylor;
Vidal-Melgosa, Silvia;
Hehemann, Jan-Hendrik;
Amann, Rudolf;
Fuchs, Bernhard M.

Publication type:

Article

Zea mays genotype influences microbial and viral rhizobiome community structure.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00335-4

By:

Yadav, Pooja;
Quattrone, Amanda;
Yang, Yuguo;
Owens, Jacob;
Kiat, Rebecca;
Kuppusamy, Thirumurugen;
Russo, Sabrina E.;
Weber, Karrie A.

Publication type:

Article

Microbial gene expression analysis of healthy and cancerous esophagus uncovers bacterial biomarkers of clinical outcomes.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00338-1

By:

Schäffer, Daniel E.;
Li, Wenrui;
Elbasir, Abdurrahman;
Altieri, Dario C.;
Long, Qi;
Auslander, Noam

Publication type:

Article

Contrasting drivers of abundant phage and prokaryotic communities revealed in diverse coastal ecosystems.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00333-6

By:

Weinheimer, Alaina R.;
Aylward, Frank O.;
Leray, Matthieu;
Scott, Jarrod J.

Publication type:

Article

Enhanced specificity of Bacillus metataxonomics using a tuf-targeted amplicon sequencing approach.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00330-9

By:

Xu, Xinming;
Nielsen, Lasse Johan Dyrbye;
Song, Lijie;
Maróti, Gergely;
Strube, Mikael Lenz;
Kovács, Ákos T.

Publication type:

Article

Diurnal cycles drive rhythmic physiology and promote survival in facultative phototrophic bacteria.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00334-5

By:

Tinguely, Camille;
Paulméry, Mélanie;
Terrettaz, Céline;
Gonzalez, Diego

Publication type:

Article

Genomic evidence that microbial carbon degradation is dominated by iron redox metabolism in thawing permafrost.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00326-5

By:

Romanowicz, Karl J.;
Crump, Byron C.;
Kling, George W.

Publication type:

Article

Associations of Batrachochytrium dendrobatidis with skin bacteria and fungi on Asian amphibian hosts.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00332-7

By:

Sun, Dan;
Herath, Jayampathi;
Zhou, Shipeng;
Ellepola, Gajaba;
Meegaskumbura, Madhava

Publication type:

Article

Gut microbiomes of cycad-feeding insects tolerant to β-methylamino-L-alanine (BMAA) are rich in siderophore biosynthesis.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00323-8

By:

Gutiérrez-García, Karina;
Whitaker, Melissa R. L.;
Bustos-Díaz, Edder D.;
Salzman, Shayla;
Ramos-Aboites, Hilda E.;
Reitz, Zachary L.;
Pierce, Naomi E.;
Cibrián-Jaramillo, Angélica;
Barona-Gómez, Francisco

Publication type:

Article

Exploring the competitive dynamic enzyme allocation scheme through enzyme cost minimization.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00331-8

By:

Qi, Shanshan;
Wang, Gangsheng;
Li, Wanyu;
Zhou, Shuhao

Publication type:

Article

The mechanism effects of root exudate on microbial community of rhizosphere soil of tree, shrub, and grass in forest ecosystem under N deposition.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00322-9

By:

Jing, Hang;
Wang, Huiling;
Wang, Guoliang;
Liu, Guobin;
Cheng, Yi

Publication type:

Article

Dynamic social interactions and keystone species shape the diversity and stability of mixed-species biofilms – an example from dairy isolates.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00328-3

By:

Sadiq, Faizan Ahmed;
De Reu, Koen;
Steenackers, Hans;
Van de Walle, Ann;
Burmølle, Mette;
Heyndrickx, Marc

Publication type:

Article

Phylogenetically and metabolically diverse autotrophs in the world's deepest blue hole.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00327-4

By:

Chen, Xing;
Liu, Jiwen;
Zhu, Xiao-Yu;
Xue, Chun-Xu;
Yao, Peng;
Fu, Liang;
Yang, Zuosheng;
Sun, Kai;
Yu, Min;
Wang, Xiaolei;
Zhang, Xiao-Hua

Publication type:

Article

Analysis of microbial composition and sharing in low-biomass human milk samples: a comparison of DNA isolation and sequencing techniques.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00325-6

By:

Spreckels, Johanne E.;
Fernández-Pato, Asier;
Kruk, Marloes;
Kurilshikov, Alexander;
Garmaeva, Sanzhima;
Sinha, Trishla;
Ghosh, Hiren;
Harmsen, Hermie;
Fu, Jingyuan;
Gacesa, Ranko;
Zhernakova, Alexandra

Publication type:

Article

Prevalence and transmission risk of colistin and multidrug resistance in long-distance coastal aquaculture.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00321-w

By:

An, Taicheng;
Cai, Yiwei;
Li, Guiying;
Li, Shaoting;
Wong, Po Keung;
Guo, Jianhua;
Zhao, Huijun

Publication type:

Article

Linking differences in microbial network structure with changes in coral larval settlement.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00320-x

By:

Turnlund, Abigail C.;
Vanwonterghem, Inka;
Botté, Emmanuelle S.;
Randall, Carly J.;
Giuliano, Christine;
Kam, Lisa;
Bell, Sara;
O'Brien, Paul;
Negri, Andrew P.;
Webster, Nicole S.;
Lurgi, Miguel

Publication type:

Article

Common loss of far-red light photoacclimation in cyanobacteria from hot and cold deserts: a case study in the Chroococcidiopsidales.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00319-4

By:

Antonaru, Laura A.;
Selinger, Vera M.;
Jung, Patrick;
Di Stefano, Giorgia;
Sanderson, Nicholas D.;
Barker, Leanne;
Wilson, Daniel J.;
Büdel, Burkhard;
Canniffe, Daniel P.;
Billi, Daniela;
Nürnberg, Dennis J.

Publication type:

Article

Correction: Vulcanimicrobium alpinus gen. nov. sp. nov., the first cultivated representative of the candidate phylum "Eremiobacterota", is a metabolically versatile aerobic anoxygenic phototroph.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00301-0

By:

Yabe, Shuhei;
Muto, Kiyoaki;
Abe, Keietsu;
Yokota, Akira;
Staudigel, Hubert;
Tebo, Bradley M.

Publication type:

Article

Extracellular vesicles are the main contributor to the non-viral protected extracellular sequence space.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00317-6

By:

Lücking, Dominik;
Mercier, Coraline;
Alarcón-Schumacher, Tomas;
Erdmann, Susanne

Publication type:

Article

Net-spinning caddisflies create denitrifier-enriched niches in the stream microbiome.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00315-8

By:

Bertagnolli, Anthony D.;
Maritan, Andrew J.;
Tumolo, Benjamin B.;
Fritz, Samuel F.;
Oakland, Hayley C.;
Mohr, Elizabeth J.;
Poole, Geoffrey C.;
Albertson, Lindsey K.;
Stewart, Frank J.

Publication type:

Article

Correction: Vulcanimicrobium alpinus gen. nov. sp. nov., the first cultivated representative of the candidate phylum "Eremiobacterota", is a metabolically versatile aerobic anoxygenic phototroph.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00301-0

By:

Yabe, Shuhei;
Muto, Kiyoaki;
Abe, Keietsu;
Yokota, Akira;
Staudigel, Hubert;
Tebo, Bradley M.

Publication type:

Article

Establishment of a transparent soil system to study Bacillus subtilis chemical ecology.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00318-5

By:

Lozano-Andrade, Carlos N.;
Nogueira, Carla G.;
Henriksen, Nathalie N. S. E.;
Wibowo, Mario;
Jarmusch, Scott A.;
Kovács, Ákos T.

Publication type:

Article

Widespread occurrence of chitinase-encoding genes suggests the Endozoicomonadaceae family as a key player in chitin processing in the marine benthos.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00316-7

By:

da Silva, Daniela M. G.;
Pedrosa, Filipa R.;
Ângela Taipa, M.;
Costa, Rodrigo;
Keller-Costa, Tina

Publication type:

Article

Ubiquitous, B<sub>12</sub>-dependent virioplankton utilizing ribonucleotide-triphosphate reductase demonstrate interseasonal dynamics and associate with a diverse range of bacterial hosts in the pelagic ocean.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00306-9

By:

Wu, Ling-Yi;
Piedade, Gonçalo J.;
Moore, Ryan M.;
Harrison, Amelia O.;
Martins, Ana M.;
Bidle, Kay D.;
Polson, Shawn W.;
Sakowski, Eric G.;
Nissimov, Jozef I.;
Dums, Jacob T.;
Ferrell, Barbra D.;
Wommack, K. Eric

Publication type:

Article

Synechococcus nitrogen gene loss in iron-limited ocean regions.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00314-9

By:

Sharpe, Garrett;
Zhao, Liang;
Meyer, Meredith G.;
Gong, Weida;
Burns, Shannon M.;
Tagliabue, Allesandro;
Buck, Kristen N.;
Santoro, Alyson E.;
Graff, Jason R.;
Marchetti, Adrian;
Gifford, Scott

Publication type:

Article

Selection and enrichment of microbial species with an increased lignocellulolytic phenotype from a native soil microbiome by activity-based probing.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00305-w

By:

Reichart, Nicholas J.;
Steiger, Andrea K.;
Van Fossen, Elise M.;
McClure, Ryan;
Overkleeft, Herman S.;
Wright, Aaron T.

Publication type:

Article

Tomato growth stage modulates bacterial communities across different soil aggregate sizes and disease levels.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00312-x

By:

Dong, Menghui;
Kuramae, Eiko E.;
Zhao, Mengli;
Li, Rong;
Shen, Qirong;
Kowalchuk, George A.

Publication type:

Article

Abundant Sulfitobacter marine bacteria protect Emiliania huxleyi algae from pathogenic bacteria.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00311-y

By:

Beiralas, Roni;
Ozer, Noy;
Segev, Einat

Publication type:

Article

Species-specific responses of marine bacteria to environmental perturbation.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00310-z

By:

Peña-Montenegro, Tito D.;
Kleindienst, Sara;
Allen, Andrew E.;
Eren, A. Murat;
McCrow, John P.;
Sánchez-Calderón, Juan D.;
Arnold, Jonathan;
Joye, Samantha B.

Publication type:

Article

Predicting global distributions of eukaryotic plankton communities from satellite data.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00308-7

By:

Kaneko, Hiroto;
Endo, Hisashi;
Henry, Nicolas;
Berney, Cédric;
Mahé, Frédéric;
Poulain, Julie;
Labadie, Karine;
Beluche, Odette;
El Hourany, Roy;
Tara Oceans Coordinators;
Acinas, Silvia G.;
Babin, Marcel;
Bork, Peer;
Bowler, Chris;
Cochrane, Guy;
de Vargas, Colomban;
Gorsky, Gabriel;
Guidi, Lionel;
Grimsley, Nigel;
Hingamp, Pascal

Publication type:

Article

Linking bacterial tetrabromopyrrole biosynthesis to coral metamorphosis.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00309-6

By:

Alker, Amanda T.;
Farrell, Morgan V.;
Demko, Alyssa M.;
Purdy, Trevor N.;
Adak, Sanjoy;
Moore, Bradley S.;
Sneed, Jennifer M.;
Paul, Valerie J.;
Shikuma, Nicholas J.

Publication type:

Article

Ecogenomics and cultivation reveal distinctive viral-bacterial communities in the surface microlayer of a Baltic Sea slick.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00307-8

By:

Rahlff, Janina;
Wietz, Matthias;
Giebel, Helge-Ansgar;
Bayfield, Oliver;
Nilsson, Emelie;
Bergström, Kristofer;
Kieft, Kristopher;
Anantharaman, Karthik;
Ribas-Ribas, Mariana;
Schweitzer, Hannah D.;
Wurl, Oliver;
Hoetzinger, Matthias;
Antson, Alfred;
Holmfeldt, Karin

Publication type:

Article

Request for public discussion and ballot to amend SeqCode rules on priority of Candidatus names and correction of typographic and orthographic errors.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00303-y

By:

Whitman, William B.;
Hedlund, Brian P.;
Palmer, Marike;
Sutcliffe, Iain;
Chuvochina, Maria

Publication type:

Article

Slow growing bacteria survive bacteriophage in isolation.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00299-5

By:

Attrill, Erin L.;
Łapińska, Urszula;
Westra, Edze R.;
Harding, Sarah V.;
Pagliara, Stefano

Publication type:

Article

Phagotrophic protists preserve antibiotic-resistant opportunistic human pathogens in the vegetable phyllosphere.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00302-z

By:

Lin, Chenshuo;
Li, Li-Juan;
Ren, Kexin;
Zhou, Shu-Yi-Dan;
Isabwe, Alain;
Yang, Le-Yang;
Neilson, Roy;
Yang, Xiao-Ru;
Cytryn, Eddie;
Zhu, Yong-Guan

Publication type:

Article

Top abundant deep ocean heterotrophic bacteria can be retrieved by cultivation.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00290-0

By:

Sanz-Sáez, Isabel;
Sánchez, Pablo;
Salazar, Guillem;
Sunagawa, Shinichi;
de Vargas, Colomban;
Bowler, Chris;
Sullivan, Matthew B.;
Wincker, Patrick;
Karsenti, Eric;
Pedrós-Alió, Carlos;
Agustí, Susana;
Gojobori, Takashi;
Duarte, Carlos M.;
Gasol, Josep M.;
Sánchez, Olga;
Acinas, Silvia G.

Publication type:

Article

Top-down structuring of freshwater bacterial communities by mixotrophic flagellates.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00289-7

By:

Ivanković, Marina;
Ptacnik, Robert;
Bengtsson, Mia Maria

Publication type:

Article

Competitive and substrate limited environments drive metabolic heterogeneity for comammox Nitrospira.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00288-8

By:

Martinez-Rabert, Eloi;
Smith, Cindy J.;
Sloan, William T.;
Gonzalez-Cabaleiro, Rebeca

Publication type:

Article

Nodulation number tempers the relative importance of stochastic processes in the assembly of soybean root-associated communities.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00296-8

By:

Wang, Lei;
Jiao, Yan;
Bi, Yingdong;
Hu, Yanli;
Jiang, Yan;
Wang, Shaodong;
Wang, Sui

Publication type:

Article

Identifying and tracking mobile elements in evolving compost communities yields insights into the nanobiome.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00294-w

By:

van Dijk, Bram;
Buffard, Pauline;
Farr, Andrew D.;
Giersdorf, Franz;
Meijer, Jeroen;
Dutilh, Bas E.;
Rainey, Paul B.

Publication type:

Article

Vitamin B<sub>12</sub> conveys a protective advantage to phycosphere-associated bacteria at high temperatures.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00298-6

By:

Mars Brisbin, Margaret;
Schofield, Alese;
McIlvin, Matthew R.;
Krinos, Arianna I.;
Alexander, Harriet;
Saito, Mak A.

Publication type:

Article

MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00295-9

By:

Vik, Dean;
Bolduc, Benjamin;
Roux, Simon;
Sun, Christine L.;
Pratama, Akbar Adjie;
Krupovic, Mart;
Sullivan, Matthew B.

Publication type:

Article

Integrating microbial community properties, biomass and necromass to predict cropland soil organic carbon.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00300-1

By:

Wang, Chao;
Wang, Xu;
Zhang, Yang;
Morrissey, Ember;
Liu, Yue;
Sun, Lifei;
Qu, Lingrui;
Sang, Changpeng;
Zhang, Hong;
Li, Guochen;
Zhang, Lili;
Fang, Yunting

Publication type:

Article

Comparative genomics unveils extensive genomic variation between populations of Listeria species in natural and food-associated environments.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00293-x

By:

Liao, Jingqiu;
Guo, Xiaodong;
Li, Shaoting;
Anupoju, Sai Manohar Balu;
Cheng, Rachel A.;
Weller, Daniel L.;
Sullivan, Genevieve;
Zhang, Hailong;
Deng, Xiangyu;
Wiedmann, Martin

Publication type:

Article

Inter-comparison of marine microbiome sampling protocols.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00278-w

By:

Pascoal, Francisco;
Tomasino, Maria Paola;
Piredda, Roberta;
Quero, Grazia Marina;
Torgo, Luís;
Poulain, Julie;
Galand, Pierre E.;
Fuhrman, Jed A.;
Mitchell, Alex;
Tinta, Tinkara;
Turk Dermastia, Timotej;
Fernandez-Guerra, Antonio;
Vezzi, Alessandro;
Logares, Ramiro;
Malfatti, Francesca;
Endo, Hisashi;
Dąbrowska, Anna Maria;
De Pascale, Fabio;
Sánchez, Pablo;
Henry, Nicolas

Publication type:

Article

Geochemical constraints on bacteriophage infectivity in terrestrial environments.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00297-7

By:

Carlson, Hans K.;
Piya, Denish;
Moore, Madeline L.;
Magar, Roniya T.;
Elisabeth, Nathalie H.;
Deutschbauer, Adam M.;
Arkin, Adam P.;
Mutalik, Vivek K.

Publication type:

Article

A comparative study reveals the relative importance of prokaryotic and eukaryotic proton pump rhodopsins in a subtropical marginal sea.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00292-y

By:

Ma, Minglei;
Li, Hongfei;
Wang, Cong;
Li, Tangcheng;
Wang, Jierui;
Yuan, Huatao;
Yu, Liying;
Wang, Jingtian;
Li, Ling;
Lin, Senjie

Publication type:

Article