Works matching AU Dieterich, Christoph

Results: 108

Increased susceptibility of human endothelial cells to infections by SARS‑CoV‑2 variants.

Published in:

Basic Research in Cardiology, 2021, v. 116, n. 1, p. 1, doi. 10.1007/s00395-021-00882-8

By:

Wagner, Julian U. G.;
Bojkova, Denisa;
Shumliakivska, Mariana;
Luxán, Guillermo;
Nicin, Luka;
Aslan, Galip S.;
Milting, Hendrik;
Kandler, Joshua D.;
Dendorfer, Andreas;
Heumueller, Andreas W.;
Fleming, Ingrid;
Bibli, Sofa‑Iris;
Jakobi, Tobias;
Dieterich, Christoph;
Zeiher, Andreas M.;
Ciesek, Sandra;
Cinatl, Jindrich;
Dimmeler, Stefanie

Publication type:

Article

pulseR: Versatile computational analysis of RNA turnover from metabolic labeling experiments.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3305, doi. 10.1093/bioinformatics/btx368

By:

Uvarovskii, Alexey;
Dieterich, Christoph

Publication type:

Article

Flexbar 3.0 - SIMD and multicore parallelization.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2941, doi. 10.1093/bioinformatics/btx330

By:

Roehr, Johannes T.;
Dieterich, Christoph;
Reinert, Knut

Publication type:

Article

Specific identification and quantification of circular RNAs from sequencing data.

Published in:

Bioinformatics, 2016, v. 32, n. 7, p. 1094, doi. 10.1093/bioinformatics/btv656

By:

Jun Cheng;
Metge, Franziska;
Dieterich, Christoph

Publication type:

Article

Detection of active transcription factor binding sites with the combination of DNase hypersensitivity and histone modifications.

Published in:

Bioinformatics, 2014, v. 30, n. 22, p. 3143, doi. 10.1093/bioinformatics/btu519

By:

Gusmao, Eduardo G.;
Dieterich, Christoph;
Zenke, Martin;
Costa, Ivan G.

Publication type:

Article

ACCUSA2: multi-purpose SNV calling enhanced by probabilistic integration of quality scores.

Published in:

Bioinformatics, 2013, v. 29, n. 14, p. 1809, doi. 10.1093/bioinformatics/btt268

By:

Piechotta, Michael;
Dieterich, Christoph

Publication type:

Article

ACCUSA—accurate SNP calling on draft genomes.

Published in:

Bioinformatics, 2010, v. 26, n. 10, p. 1364, doi. 10.1093/bioinformatics/btq138

By:

Fröhler, Sebastian;
Dieterich, Christoph

Publication type:

Article

Automatic extraction of 12 cardiovascular concepts from German discharge letters using pre-trained language models.

Published in:

Digital Health, 2021, v. 7, p. 1, doi. 10.1177/20552076211057662

By:

Richter-Pechanski, Phillip;
Geis, Nicolas A;
Kiriakou, Christina;
Schwab, Dominic M;
Dieterich, Christoph

Publication type:

Article

RNA Modification Level Estimation with pulseR.

Published in:

Genes, 2018, v. 9, n. 12, p. 619, doi. 10.3390/genes9120619

By:

Boileau, Etienne;
Dieterich, Christoph

Publication type:

Article

The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism.

Published in:

Nature Genetics, 2008, v. 40, n. 10, p. 1193, doi. 10.1038/ng.227

By:

Dieterich, Christoph;
Clifton, Sandra W.;
Schuster, Lisa N.;
Chinwalla, Asif;
Delehaunty, Kimberly;
Dinkelacker, Iris;
Fulton, Lucinda;
Fulton, Robert;
Godfrey, Jennifer;
Minx, Pat;
Mitreva, Makedonka;
Roeseler, Waltraud;
Huiyu Tian;
Hanh Witte;
Shiaw-Pyng Yang;
Wilson, Richard K.;
Sommer, Ralf J.

Publication type:

Article

Divergent gene expression in the conserved dauer stage of the nematodes Pristionchus pacificus and Caenorhabditis elegans.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 254, doi. 10.1186/1471-2164-13-254

By:

Sinha, Amit;
Sommer, Ralf J.;
Dieterich, Christoph

Publication type:

Article

3PD: Rapid design of optimal primers for chromosomeconformation capture assays.

Published in:

BMC Genomics, 2009, v. 10, p. 635, doi. 10.1186/1471-2164-10-635

By:

Fröhler, Sebastian;
Dieterich, Christoph

Publication type:

Article

A Caenorhabditis motif compendium for studying transcriptional gene regulation.

Published in:

BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-30

By:

Dieterich, Christoph;
Sommer, Ralf J.

Publication type:

Article

Comparative promoter region analysis powered by CORG.

Published in:

BMC Genomics, 2005, v. 6, p. 24, doi. 10.1186/1471-2164-6-24

By:

Dieterich, Christoph;
Grossmann, Steffen;
Tanzer, Andrea;
Röpcke, Stefan;
Arndt, Peter F;
Stadler, Peter F.;
Vingron, Martin

Publication type:

Article

SITEBLASTrapid and sensitive local alignment of genomic sequences employing motif anchors.

Published in:

Bioinformatics, 2005, v. 21, n. 9, p. 2093, doi. 10.1093/bioinformatics/bti224

By:

Morris Michael;
Christoph Dieterich;
Martin Vingron

Publication type:

Article

Functional inference from non-random distributions of conserved predicted transcription factor binding sites.

Published in:

Bioinformatics, 2004, v. 20, n. suppl_1, p. i109, doi. 10.1093/bioinformatics/bth908

By:

Dieterich, Christoph;
Rahmann, Sven;
Vingron, Martin

Publication type:

Article

Functional inference from non-random distributions of conserved predicted transcription factor binding sites.

Published in:

Bioinformatics, 2004, v. 20, p. i109, doi. 10.1093/bioinformatics/bth908

By:

Dieterich, Christoph;
Rahmann, Sven;
Vingron, Martin

Publication type:

Article

Annotating regulatory DNA based on man-mouse genomic comparison.

Published in:

Bioinformatics, 2002, v. 18, p. S84, doi. 10.1093/bioinformatics/18.suppl_2.S84

By:

Dieterich, Christoph;
Cusack, Brian;
Wang, Haiyan;
Rateitschak, Katja;
Krause, Antje;
Vingron, Martin

Publication type:

Article

Mitofusin 2 is required to maintain mitochondrial coenzyme Q levels.

Published in:

Journal of Cell Biology, 2015, v. 208, n. 4, p. 429, doi. 10.1083/jcb.201411100

By:

Mourier, Arnaud;
Motori, Elisa;
Brandt, Tobias;
Lagouge, Marie;
Atanassov, Ilian;
Galinier, Anne;
Rappl, Gunter;
Brodesser, Susanne;
Hultenby, Kjell;
Dieterich, Christoph;
Larsson, Nils-Göran

Publication type:

Article

MicroRNA-138 controls hippocampal interneuron function and short-term memory in mice.

Published in:

eLife, 2022, p. 1, doi. 10.7554/eLife.74056

By:

Daswani, Reetu;
Gilardi, Carlotta;
Soutschek, Michael;
Nanda, Prakruti;
Weiss, Kerstin;
Bicker, Silvia;
Fiore, Roberto;
Dieterich, Christoph;
Germain, Pierre-Luc;
Winterer, Jochen;
Schratt, Gerhard

Publication type:

Article

Single-cell transcriptomics defines heterogeneity of epicardial cells and fibroblasts within the infarcted murine heart.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.65921

By:

Hesse, Julia;
Owenier, Christoph;
Lautwein, Tobias;
Zalfen, Ria;
Weber, Jonas F.;
Zhaoping Ding;
Alter, Christina;
Lang, Alexander;
Grandoch, Maria;
Gerdes, Norbert;
Fischer, Jens W.;
Klau, Gunnar W.;
Dieterich, Christoph;
Köhrer, Karl;
Schrader, Jürgen

Publication type:

Article

Circular RNA circCCNT2 is upregulated in the anterior cingulate cortex of individuals with bipolar disorder.

Published in:

Translational Psychiatry, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41398-021-01746-4

By:

Lin, Rixing;
Lopez, Juan Pablo;
Cruceanu, Cristiana;
Pierotti, Caroline;
Fiori, Laura M.;
Squassina, Alessio;
Chillotti, Caterina;
Dieterich, Christoph;
Mellios, Nikolaos;
Turecki, Gustavo

Publication type:

Article

Deep Characterization of Circular RNAs from Human Cardiovascular Cell Models and Cardiac Tissue.

Published in:

Cells (2073-4409), 2020, v. 9, n. 7, p. 1616, doi. 10.3390/cells9071616

By:

Jakobi, Tobias;
Siede, Dominik;
Eschenbach, Jessica;
Heumüller, Andreas W.;
Busch, Martin;
Nietsch, Rouven;
Meder, Benjamin;
Most, Patrick;
Dimmeler, Stefanie;
Backs, Johannes;
Katus, Hugo A.;
Dieterich, Christoph

Publication type:

Article

RN7SK small nuclear RNA controls bidirectional transcription of highly expressed gene pairs in skin.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26083-4

By:

Bandiera, Roberto;
Wagner, Rebecca E.;
Britto-Borges, Thiago;
Dieterich, Christoph;
Dietmann, Sabine;
Bornelöv, Susanne;
Frye, Michaela

Publication type:

Article

RNA modification mapping with JACUSA2.

Published in:

Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02676-0

By:

Piechotta, Michael;
Naarmann-de Vries, Isabel S.;
Wang, Qi;
Altmüller, Janine;
Dieterich, Christoph

Publication type:

Article

Label-Free Protein-RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression.

Published in:

PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0125745

By:

Boucas, Jorge;
Fritz, Christian;
Schmitt, Anna;
Riabinska, Arina;
Thelen, Lisa;
Peifer, Martin;
Leeser, Uschi;
Nuernberg, Peter;
Altmueller, Janine;
Gaestel, Matthias;
Dieterich, Christoph;
Reinhardt, H. Christian

Publication type:

Article

CYNTENATOR: Progressive Gene Order Alignment of 17 Vertebrate Genomes.

Published in:

PLoS ONE, 2010, v. 5, n. 1, p. 1, doi. 10.1371/journal.pone.0008861

By:

Rödelsperger, Christian;
Dieterich, Christoph

Publication type:

Article

Human UPF3A and UPF3B enable fault‐tolerant activation of nonsense‐mediated mRNA decay.

Published in:

EMBO Journal, 2022, v. 41, n. 10, p. 1, doi. 10.15252/embj.2021109191

By:

Wallmeroth, Damaris;
Lackmann, Jan‐Wilm;
Kueckelmann, Sabrina;
Altmüller, Janine;
Dieterich, Christoph;
Boehm, Volker;
Gehring, Niels H

Publication type:

Article

Ageing induces tissue‐specific transcriptomic changes in Caenorhabditis elegans.

Published in:

EMBO Journal, 2022, v. 41, n. 8, p. 1, doi. 10.15252/embj.2021109633

By:

Wang, Xueqing;
Jiang, Quanlong;
Song, Yuanyuan;
He, Zhidong;
Zhang, Hongdao;
Song, Mengjiao;
Zhang, Xiaona;
Dai, Yumin;
Karalay, Oezlem;
Dieterich, Christoph;
Antebi, Adam;
Wu, Ligang;
Han, Jing‐Dong J;
Shen, Yidong

Publication type:

Article

Ythdf is a N6‐methyladenosine reader that modulates Fmr1 target mRNA selection and restricts axonal growth in Drosophila.

Published in:

EMBO Journal, 2021, v. 40, n. 4, p. 1, doi. 10.15252/embj.2020104975

By:

Worpenberg, Lina;
Paolantoni, Chiara;
Longhi, Sara;
Mulorz, Miriam M;
Lence, Tina;
Wessels, Hans‐Hermann;
Dassi, Erik;
Aiello, Giuseppe;
Sutandy, F X Reymond;
Scheibe, Marion;
Edupuganti, Raghu R;
Busch, Anke;
Möckel, Martin M;
Vermeulen, Michiel;
Butter, Falk;
König, Julian;
Notarangelo, Michela;
Ohler, Uwe;
Dieterich, Christoph;
Quattrone, Alessandro

Publication type:

Article

Magnetique: an interactive web application to explore transcriptome signatures of heart failure.

Published in:

2022

By:

Britto-Borges, Thiago;
Ludt, Annekathrin;
Boileau, Etienne;
Gjerga, Enio;
Marini, Federico;
Dieterich, Christoph

Publication type:

journal article

The RMaP challenge of predicting RNA modifications by nanopore sequencing.

Published in:

Communications Chemistry, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42004-025-01507-0

By:

Spangenberg, Jannes;
Mündnich, Stefan;
Busch, Anne;
Pastore, Stefan;
Wierczeiko, Anna;
Goettsch, Winfried;
Dietrich, Vincent;
Pryszcz, Leszek P.;
Cruciani, Sonia;
Novoa, Eva Maria;
Joshi, Kandarp;
Perera, Ranjan;
Di Giorgio, Salvatore;
Arrubarrena, Paola;
Tellioglu, Irem;
Poon, Chi-Lam;
Wan, Yuk Kei;
Göke, Jonathan;
Hildebrandt, Andreas;
Dieterich, Christoph

Publication type:

Article

Striated muscle-specific base editing enables correction of mutations causing dilated cardiomyopathy.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-39352-1

By:

Grosch, Markus;
Schraft, Laura;
Chan, Adrian;
Küchenhoff, Leonie;
Rapti, Kleopatra;
Ferreira, Anne-Maud;
Kornienko, Julia;
Li, Shengdi;
Radke, Michael H.;
Krämer, Chiara;
Clauder-Münster, Sandra;
Perlas, Emerald;
Backs, Johannes;
Gotthardt, Michael;
Dieterich, Christoph;
van den Hoogenhof, Maarten M. G.;
Grimm, Dirk;
Steinmetz, Lars M.

Publication type:

Article

Computational approaches for circular RNA analysis.

Published in:

Wiley Interdisciplinary Reviews: RNA, 2019, v. 10, n. 3, p. N.PAG, doi. 10.1002/wrna.1528

By:

Jakobi, Tobias;
Dieterich, Christoph

Publication type:

Article

Computational biology of RNA interactions.

Published in:

Wiley Interdisciplinary Reviews: RNA, 2013, v. 4, n. 1, p. 107, doi. 10.1002/wrna.1147

By:

Dieterich, Christoph;
Stadler, Peter F.

Publication type:

Article

Therapeutic inhibition of RBM20 improves diastolic function in a murine heart failure model and human engineered heart tissue.

Published in:

Science Translational Medicine, 2021, v. 13, n. 622, p. 1, doi. 10.1126/scitranslmed.abe8952

By:

Radke, Michael H.;
Badillo-Lisakowski, Victor;
Britto-Borges, Thiago;
Kubli, Dieter A.;
Jüttner, René;
Parakkat, Pragati;
Carballo, Jacobo Lopez;
Hüttemeister, Judith;
Liss, Martin;
Hansen, Arne;
Dieterich, Christoph;
Mullick, Adam E.;
Gotthardt, Michael

Publication type:

Article

Serum microRNAs in patients with genetic amyotrophic lateral sclerosis and pre-manifest mutation carriers.

Published in:

2014

By:

Freischmidt, Axel;
Müller, Kathrin;
Zondler, Lisa;
Weydt, Patrick;
Volk, Alexander E;
Bozic, Anze Losdorfer;
Walter, Michael;
Bonin, Michael;
Mayer, Benjamin;
von Arnim, Christine A F;
Otto, Markus;
Dieterich, Christoph;
Holzmann, Karlheinz;
Andersen, Peter M;
Ludolph, Albert C;
Danzer, Karin M;
Weishaupt, Jochen H;
Božič, Anže Lošdorfer

Publication type:

journal article

JACUSA: site-specific identification of RNA editing events from replicate sequencing data.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1432-8

By:

Piechotta, Michael;
Wyler, Emanuel;
Ohler, Uwe;
Landthaler, Markus;
Dieterich, Christoph

Publication type:

Article

A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance.

Published in:

Molecular Systems Biology, 2017, v. 13, n. 9, p. n/a, doi. 10.15252/msb.20177663

By:

Tain, Luke S;
Sehlke, Robert;
Jain, Chirag;
Chokkalingam, Manopriya;
Nagaraj, Nagarjuna;
Essers, Paul;
Rassner, Mark;
Grönke, Sebastian;
Froelich, Jenny;
Dieterich, Christoph;
Mann, Matthias;
Alic, Nazif;
Beyer, Andreas;
Partridge, Linda

Publication type:

Article

Sex-Biased Gene Expression and Evolution of the X Chromosome in Nematodes.

Published in:

Genetics, 2014, v. 197, n. 3, p. 865, doi. 10.1534/genetics.114.163311

By:

Albritton, Sarah Elizabeth;
Kranz, Anna-Lena;
Rao, Prashant;
Kramer, Maxwell;
Dieterich, Christoph;
Ercan, Sevinç

Publication type:

Article

Characterization of Genetic Diversity in the Nematode Pristionchus pacificus from Population-Scale Resequencing Data.

Published in:

Genetics, 2014, v. 196, n. 4, p. 1153, doi. 10.1534/genetics.113.159855

By:

Rödelsperger, Christian;
Neher, Richard A.;
Weller, Andreas M.;
Eberhardt, Gabi;
Witte, Hanh;
Mayer, Werner E.;
Dieterich, Christoph;
Sommer, Ralf J.

Publication type:

Article

Stable Redox-Cycling Nitroxide Tempol Has Antifungal and Immune-Modulatory Properties.

Published in:

Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.01843

By:

Hosseinzadeh, Ava;
Stylianou, Marios;
Lopes, José Pedro;
Müller, Daniel C.;
Häggman, André;
Holmberg, Sandra;
Grumaz, Christian;
Johansson, Anders;
Sohn, Kai;
Dieterich, Christoph;
Urban, Constantin F.

Publication type:

Article

Full-Length Spatial Transcriptomics Reveals the Unexplored Isoform Diversity of the Myocardium Post-MI.

Published in:

Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.912572

By:

Boileau, Etienne;
Xue Li;
Vries, Isabel S. Naarmann-de;
Becker, Christian;
Casper, Ramona;
Altmüller, Janine;
Leuschner, Florian;
Dieterich, Christoph

Publication type:

Article

A coding-independent function of an alternative Ube3a transcript during neuronal development.

Published in:

Nature Neuroscience, 2015, v. 18, n. 5, p. 666, doi. 10.1038/nn.3996

By:

Valluy, Jeremy;
Bicker, Silvia;
Aksoy-Aksel, Ayla;
Lackinger, Martin;
Sumer, Simon;
Fiore, Roberto;
Wüst, Tatjana;
Seffer, Dominik;
Metge, Franziska;
Dieterich, Christoph;
Wöhr, Markus;
Schwarting, Rainer;
Schratt, Gerhard

Publication type:

Article

Cellular heterogeneity contributes to subtype-specific expression of ZEB1 in human glioblastoma.

Published in:

PLoS ONE, 2017, v. 12, n. 9, p. 1, doi. 10.1371/journal.pone.0185376

By:

Euskirchen, Philipp;
Radke, Josefine;
Schmidt, Marc Sören;
Schulze Heuling, Eva;
Kadikowski, Eric;
Maricos, Meron;
Knab, Felix;
Grittner, Ulrike;
Zerbe, Norman;
Czabanka, Marcus;
Dieterich, Christoph;
Miletic, Hrvoje;
Mørk, Sverre;
Koch, Arend;
Endres, Matthias;
Harms, Christoph

Publication type:

Article

Changes in metabolite profiles caused by genetically determined obesity in mice.

Published in:

Metabolomics, 2014, v. 10, n. 3, p. 461, doi. 10.1007/s11306-013-0590-1

By:

Schäfer, Nadine;
Yu, Zhonghao;
Wagener, Asja;
Millrose, Marion;
Reissmann, Monika;
Bortfeldt, Ralf;
Dieterich, Christoph;
Adamski, Jerzy;
Wang-Sattler, Rui;
Illig, Thomas;
Brockmann, Gudrun

Publication type:

Article

Muscle‐specific Cand2 is translationally upregulated by mTORC1 and promotes adverse cardiac remodeling.

Published in:

EMBO Reports, 2021, v. 22, n. 12, p. 1, doi. 10.15252/embr.202052170

By:

Górska, Agnieszka A;
Sandmann, Clara;
Riechert, Eva;
Hofmann, Christoph;
Malovrh, Ellen;
Varma, Eshita;
Kmietczyk, Vivien;
Ölschläger, Julie;
Jürgensen, Lonny;
Kamuf‐Schenk, Verena;
Stroh, Claudia;
Furkel, Jennifer;
Konstandin, Mathias H;
Sticht, Carsten;
Boileau, Etienne;
Dieterich, Christoph;
Frey, Norbert;
Katus, Hugo A;
Doroudgar, Shirin;
Völkers, Mirko

Publication type:

Article

Pervasive compartment‐specific regulation of gene expression during homeostatic synaptic scaling.

Published in:

EMBO Reports, 2021, v. 22, n. 10, p. 1, doi. 10.15252/embr.202052094

By:

Colameo, David;
Rajman, Marek;
Soutschek, Michael;
Bicker, Silvia;
von Ziegler, Lukas;
Bohacek, Johannes;
Winterer, Jochen;
Germain, Pierre‐Luc;
Dieterich, Christoph;
Schratt, Gerhard

Publication type:

Article

Loss of genomic integrity induced by lysosphingolipid imbalance drives ageing in the heart.

Published in:

EMBO Reports, 2019, v. 20, n. 4, p. N.PAG, doi. 10.15252/embr.201847407

By:

Ahuja, Gaurav;
Bartsch, Deniz;
Yao, Wenjie;
Geissen, Simon;
Frank, Stefan;
Aguirre, Aitor;
Russ, Nicole;
Messling, Jan‐Erik;
Dodzian, Joanna;
Lagerborg, Kim A;
Vargas, Natalia Emilse;
Muck, Joscha Sergej;
Brodesser, Susanne;
Baldus, Stephan;
Sachinidis, Agapios;
Hescheler, Juergen;
Dieterich, Christoph;
Trifunovic, Aleksandra;
Papantonis, Argyris;
Petrascheck, Michael

Publication type:

Article

A placental mammal‐specific microRNA cluster acts as a natural brake for sociability in mice.

Published in:

EMBO Reports, 2019, v. 20, n. 2, p. N.PAG, doi. 10.15252/embr.201846429

By:

Lackinger, Martin;
Sungur, A Özge;
Daswani, Reetu;
Soutschek, Michael;
Bicker, Silvia;
Stemmler, Lea;
Wüst, Tatjana;
Fiore, Roberto;
Dieterich, Christoph;
Schwarting, Rainer KW;
Wöhr, Markus;
Schratt, Gerhard

Publication type:

Article