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Population genomics and haplotype analysis in spelt and bread wheat identifies a gene regulating glume color.
Published in:
Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-01908-6
By:
- Abrouk, Michael;
- Athiyannan, Naveenkumar;
- Müller, Thomas;
- Pailles, Yveline;
- Stritt, Christoph;
- Roulin, Anne C.;
- Chu, Chenggen;
- Liu, Shuyu;
- Morita, Takumi;
- Handa, Hirokazu;
- Poland, Jesse;
- Keller, Beat;
- Krattinger, Simon G.
Publication type:
Article
Potential of publicly available Beta vulgaris germplasm for sustainable sugarbeet improvement indicated by combining analysis of genetic diversity and historic resistance evaluation.
Published in:
Crop Science, 2023, v. 63, n. 4, p. 2255, doi. 10.1002/csc2.20978
By:
- Tehseen, Muhammad Massub;
- Poore, Rachael Claire;
- Fugate, Karen K.;
- Bolton, Melvin D.;
- Ramachandran, Vanitharani;
- Wyatt, Nathan A.;
- Li, Xuehui;
- Chu, Chenggen
Publication type:
Article
Newly developed sugarbeet lines with altered postharvest respiration rates differ in transcription factor and glycolytic enzyme expression.
Published in:
Crop Science, 2022, v. 62, n. 3, p. 1251, doi. 10.1002/csc2.20729
By:
- Fugate, Karen K.;
- Campbell, Larry G.;
- Lafta, Abbas M.;
- Eide, John D.;
- Khan, Mohamed F. R.;
- Chu, Chenggen;
- Finger, Fernando L.
Publication type:
Article
Genetic dissection of end‐use quality traits in two widely adapted wheat cultivars 'TAM 111' and 'TAM 112'.
Published in:
Crop Science, 2021, v. 61, n. 3, p. 1944, doi. 10.1002/csc2.20415
By:
- Dhakal, Smit;
- Liu, Xiaoxiao;
- Girard, Audrey;
- Chu, Chenggen;
- Yang, Yan;
- Wang, Shichen;
- Xue, Qingwu;
- Rudd, Jackie C.;
- Ibrahim, Amir M. H.;
- Awika, Joseph M.;
- Johnson, Charles D.;
- Jessup, Kirk E.;
- Baker, Jason A.;
- Garza, Lisa;
- Devkota, Ravindra N.;
- Baker, Shannon;
- Metz, Richard P.;
- Liu, Shuyu
Publication type:
Article
Structural chromosome rearrangements and polymorphisms identified in Chinese wheat cultivars by high-resolution multiplex oligonucleotide FISH.
Published in:
Theoretical & Applied Genetics, 2018, v. 131, n. 9, p. 1967, doi. 10.1007/s00122-018-3126-2
By:
- Huang, Xinyi;
- Zhu, Minqiu;
- Zhuang, Lifang;
- Zhang, Siyu;
- Wang, Junjuan;
- Chen, Xuejun;
- Wang, Danrui;
- Chen, Jianyong;
- Bao, Yinguang;
- Guo, Jie;
- Zhang, Jinlong;
- Feng, Yigao;
- Chu, Chenggen;
- Du, Pei;
- Qi, Zengjun;
- Wang, Honggang;
- Chen, Peidu
Publication type:
Article
Physical mapping of chromosome 4J of Thinopyrum bessarabicum using gamma radiation-induced aberrations.
Published in:
Theoretical & Applied Genetics, 2015, v. 128, n. 7, p. 1319, doi. 10.1007/s00122-015-2508-y
By:
- Pu, Jing;
- Wang, Qing;
- Shen, Yuefeng;
- Zhuang, Lifang;
- Li, Chenxu;
- Tan, Mengfa;
- Bie, Tongde;
- Chu, Chenggen;
- Qi, Zengjun
Publication type:
Article
Identification and molecular mapping of two QTLs with major effects for resistance to Fusarium head blight in wheat.
Published in:
Theoretical & Applied Genetics, 2011, v. 123, n. 7, p. 1107, doi. 10.1007/s00122-011-1652-2
By:
- Chu, Chenggen;
- Niu, Zhixia;
- Zhong, Shaobin;
- Chao, Shiaoman;
- Friesen, Timothy;
- Halley, Scott;
- Elias, Elias;
- Dong, Yanhong;
- Faris, Justin;
- Xu, Steven
Publication type:
Article
Differential proteomic analysis of proteins in wheat spikes induced by Fusarium graminearum.
Published in:
Proteomics, 2005, v. 5, n. 17, p. 4496, doi. 10.1002/pmic.200401317
By:
- Yun Wang;
- Liming Yang;
- Haibin Xu;
- Qifu Li;
- Zhengqiang Ma;
- Chenggen Chu
Publication type:
Article
Mapping QTL for Yield and Its Component Traits Using Wheat (Triticum aestivum L.) RIL Mapping Population from TAM 113 × Gallagher.
Published in:
Agronomy, 2023, v. 13, n. 9, p. 2402, doi. 10.3390/agronomy13092402
By:
- Cerit, Mustafa;
- Wang, Zhen;
- Dogan, Mehmet;
- Yu, Shuhao;
- Valenzuela-Antelo, Jorge L.;
- Chu, Chenggen;
- Wang, Shichen;
- Xue, Qingwu;
- Ibrahim, Amir M. H.;
- Rudd, Jackie C.;
- Metz, Richard;
- Johnson, Charles D.;
- Liu, Shuyu
Publication type:
Article
Development of STARP Marker Platform for Flexible SNP Genotyping in Sugarbeet.
Published in:
Agronomy, 2023, v. 13, n. 5, p. 1359, doi. 10.3390/agronomy13051359
By:
- Tehseen, Muhammad Massub;
- Zheng, Yaojie;
- Wyatt, Nathan A.;
- Bolton, Melvin D.;
- Yang, Shengming;
- Xu, Steven S.;
- Li, Xuehui;
- Chu, Chenggen
Publication type:
Article
QTL Analysis of Yield and End-Use Quality Traits in Texas Hard Red Winter Wheat.
Published in:
Agronomy, 2023, v. 13, n. 3, p. 689, doi. 10.3390/agronomy13030689
By:
- Dogan, Mehmet;
- Wang, Zhen;
- Cerit, Mustafa;
- Valenzuela-Antelo, Jorge L.;
- Dhakal, Smit;
- Chu, Chenggen;
- Xue, Qingwu;
- Ibrahim, Amir M. H.;
- Rudd, Jackie C.;
- Bernardo, Amy;
- St. Amand, Paul;
- Bai, Guihua;
- Zhang, Hongbin;
- Liu, Shuyu
Publication type:
Article
The Hessian fly resistance gene HvRHF1 is localized in an NBS-LRR gene cluster in barley.
Published in:
Theoretical & Applied Genetics, 2024, v. 137, n. 3, p. 1, doi. 10.1007/s00122-024-04581-5
By:
- Karki, Manila;
- Robbani, Md Golam;
- Chu, Chenggen;
- Xu, Steven;
- Liu, Zhaohui;
- Yang, Shengming
Publication type:
Article
Genome wide identification of QTL associated with yield and yield components in two popular wheat cultivars TAM 111 and TAM 112.
Published in:
PLoS ONE, 2020, v. 15, n. 12, p. 1, doi. 10.1371/journal.pone.0237293
By:
- Yang, Yan;
- Dhakal, Smit;
- Chu, Chenggen;
- Wang, Shichen;
- Xue, Qingwu;
- Rudd, Jackie C.;
- Ibrahim, Amir M. H.;
- Jessup, Kirk;
- Baker, Jason;
- Fuentealba, Maria Pilar;
- Devkota, Ravindra;
- Baker, Shannon;
- Johnson, Charles D.;
- Metz, Richard;
- Liu, Shuyu
Publication type:
Article
SnTox5- Snn5: a novel Stagonospora nodorum effector-wheat gene interaction and its relationship with the SnToxA- Tsn1 and SnTox3- Snn3- B1 interactions.
Published in:
Molecular Plant Pathology, 2012, v. 13, n. 9, p. 1101, doi. 10.1111/j.1364-3703.2012.00819.x
By:
- Friesen, Timothy l.;
- Chu, Chenggen;
- Xu, Steven S.;
- Faris, Justin D.
Publication type:
Article
Comparison of TaqMan, KASP and rhAmp SNP genotyping platforms in hexaploid wheat.
Published in:
PLoS ONE, 2019, v. 14, n. 5, p. 1, doi. 10.1371/journal.pone.0217222
By:
- Ayalew, Habtamu;
- Tsang, Pak Wah;
- Chu, Chenggen;
- Wang, Junzhou;
- Liu, Shuyu;
- Chen, Caifu;
- Ma, Xue-Feng
Publication type:
Article
Evaluation of NPGS Germplasm for Resistance to Sugar Beet Root Maggot, 2022.
Published in:
Arthropod Management Tests (Online), 2023, v. 48, n. 1, p. 1, doi. 10.1093/amt/tsad002
By:
- Chu, Chenggen;
- Hellier, Barbara C;
- Dorn, Kevin M
Publication type:
Article
Meta-transcriptomic analysis reveals the geographical expansion of known sugarbeetinfecting viruses and the occurrence of a novel virus in sugarbeet in the United States.
Published in:
Frontiers in Plant Science, 2024, p. 1, doi. 10.3389/fpls.2024.1429402
By:
- Chinnadurai, Chinnaraja;
- Wyatt, Nathan A.;
- Weiland, John J.;
- Neher, Oliver T.;
- Hastings, Joe;
- Bloomquist, Mark W.;
- Chenggen Chu;
- Chanda, Ashok K.;
- Khan, Mohamed;
- Bolton, Melvin D.;
- Ramachandran, Vanitharani
Publication type:
Article
Mechanism of Sugarbeet Seed Germination Enhanced by Hydrogen Peroxide.
Published in:
Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.888519
By:
- Chu, Chenggen;
- Poore, Rachael Claire;
- Bolton, Melvin D.;
- Fugate, Karen K.
Publication type:
Article
Function and evolution of allelic variations of Sr13 conferring resistance to stem rust in tetraploid wheat (Triticum turgidum L.).
Published in:
Plant Journal, 2021, v. 106, n. 6, p. 1674, doi. 10.1111/tpj.15263
By:
- Gill, Baljeet K.;
- Klindworth, Daryl L.;
- Rouse, Matthew N.;
- Zhang, Jinglun;
- Zhang, Qijun;
- Sharma, Jyoti S.;
- Chu, Chenggen;
- Long, Yunming;
- Chao, Shiaoman;
- Olivera, Pablo D.;
- Friesen, Timothy L.;
- Zhong, Shaobin;
- Jin, Yue;
- Faris, Justin D.;
- Fiedler, Jason D.;
- Elias, Elias M.;
- Liu, Shuyu;
- Cai, Xiwen;
- Xu, Steven S.
Publication type:
Article
Development of the Wheat Practical Haplotype Graph database as a resource for genotyping data storage and genotype imputation.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 2, p. 1, doi. 10.1093/g3journal/jkab390
By:
- Jordan, Katherine W.;
- Bradbury, Peter J.;
- Miller, Zachary R.;
- Nyine, Moses;
- Fei He;
- Fraser, Max;
- Anderson, Jim;
- Mason, Esten;
- Katz, Andrew;
- Pearce, Stephen;
- Carter, Arron H.;
- Prather, Samuel;
- Pumphrey, Michael;
- Jianli Chen;
- Cook, Jason;
- Shuyu Liu;
- Rudd, Jackie C.;
- Zhen Wang;
- Chenggen Chu;
- Ibrahim, Amir M. H.
Publication type:
Article
Genetic drift, historic migration, and limited gene flow contributing to the subpopulation divergence in wild sea beet (Beta vulgaris ssp. maritima (L.) Arcang).
Published in:
PLoS ONE, 2024, v. 19, n. 9, p. 1, doi. 10.1371/journal.pone.0308626
By:
- Tehseen, Muhammad Massub;
- Wyatt, Nathan A.;
- Bolton, Melvin D.;
- Fugate, Karen K.;
- Preister, Lisa S.;
- Yang, Shengming;
- Ramachandran, Vanitharani;
- Li, Xuehui;
- Chu, Chenggen
Publication type:
Article
A new strategy for using historical imbalanced yield data to conduct genome-wide association studies and develop genomic prediction models for wheat breeding.
Published in:
Molecular Breeding, 2022, v. 42, n. 4, p. 1, doi. 10.1007/s11032-022-01287-8
By:
- Chu, Chenggen;
- Wang, Shichen;
- Rudd, Jackie C.;
- Ibrahim, Amir M. H.;
- Xue, Qingwu;
- Devkota, Ravindra N.;
- Baker, Jason A.;
- Baker, Shannon;
- Simoneaux, Bryan;
- Opena, Geraldine;
- Dong, Haixiao;
- Liu, Xiaoxiao;
- Jessup, Kirk E.;
- Chen, Ming-Shun;
- Hui, Kele;
- Metz, Richard;
- Johnson, Charles D.;
- Zhang, Zhiwu S.;
- Liu, Shuyu
Publication type:
Article
Predominant wheat-alien chromosome translocations in newly developed wheat of China.
Published in:
Molecular Breeding, 2021, v. 41, n. 4, p. 1, doi. 10.1007/s11032-021-01206-3
By:
- Wu, Nan;
- Lei, Yanhong;
- Pei, Dan;
- Wu, Hao;
- Liu, Xin;
- Fang, Jiaxin;
- Guo, Jiangtao;
- Wang, Conglei;
- Guo, Jie;
- Zhang, Jinlong;
- Liu, Aifeng;
- Wen, Mingxing;
- Qi, Zengjun;
- Yang, Xueming;
- Bie, Tongde;
- Chu, Chenggen;
- Zhou, Bo;
- Chen, Peidu
Publication type:
Article
Frequent variations in tandem repeats pSc200 and pSc119.2 cause rapid chromosome evolution of open-pollinated rye.
Published in:
Molecular Breeding, 2019, v. 39, n. 9, p. N.PAG, doi. 10.1007/s11032-019-1033-0
By:
- Guo, Jiangtao;
- Lei, Yanhong;
- Zhang, Huiting;
- Song, Danhua;
- Liu, Xin;
- Cao, Zhenglan;
- Chu, Chenggen;
- Zhuang, Lifang;
- Qi, Zengjun
Publication type:
Article
RNA-seq facilitates development of chromosome-specific markers and transfer of rye chromatin to wheat.
Published in:
Molecular Breeding, 2018, v. 38, n. 1, p. 1, doi. 10.1007/s11032-017-0762-1
By:
- Wu, Nan;
- Li, Min;
- Sun, Haixing;
- Cao, Zhenglan;
- Liu, Peng;
- Ding, Taochun;
- Xu, Haibin;
- Chu, Chenggen;
- Zhuang, Lifang;
- Qi, Zengjun
Publication type:
Article
RNA-seq analysis reveals different drought tolerance mechanisms in two broadly adapted wheat cultivars 'TAM 111' and 'TAM 112'.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-83372-0
By:
- Chu, Chenggen;
- Wang, Shichen;
- Paetzold, Li;
- Wang, Zhen;
- Hui, Kele;
- Rudd, Jackie C.;
- Xue, Qingwu;
- Ibrahim, Amir M. H.;
- Metz, Richard;
- Johnson, Charles D.;
- Rush, Charles M.;
- Liu, Shuyu
Publication type:
Article
Transcriptomic and metabolomic changes in postharvest sugarbeet roots reveal widespread metabolic changes in storage and identify genes potentially responsible for respiratory sucrose loss.
Published in:
Frontiers in Plant Science, 2024, p. 1, doi. 10.3389/fpls.2024.1320705
By:
- Fugate, Karen K.;
- Eide, John D.;
- Lafta, Abbas M.;
- Tehseen, Muhammad Massub;
- Chenggen Chu;
- Khan, Mohamed F. R.;
- Finger, Fernando L.
Publication type:
Article
Physical localization of a novel blue-grained gene derived from Thinopyrum bessarabicum.
Published in:
Molecular Breeding, 2013, v. 31, n. 1, p. 195, doi. 10.1007/s11032-012-9783-y
By:
- Shen, Yuefeng;
- Shen, Jian;
- Dawadondup;
- Zhuang, Lifang;
- Wang, Yanzhi;
- Pu, Jing;
- Feng, Yigao;
- Chu, Chenggen;
- Wang, Xiue;
- Qi, Zengjun
Publication type:
Article
Genome-wide identification of QTL conferring high-temperature adult-plant (HTAP) resistance to stripe rust ( Puccinia striiformis f. sp . tritici) in wheat.
Published in:
Molecular Breeding, 2012, v. 29, n. 3, p. 791, doi. 10.1007/s11032-011-9590-x
By:
- Chen, Jianli;
- Chu, Chenggen;
- Souza, Edward;
- Guttieri, Mary;
- Chen, Xianming;
- Xu, Steven;
- Hole, David;
- Zemetra, Robert
Publication type:
Article
Genome-wide QTL mapping of yield and agronomic traits in two widely adapted winter wheat cultivars from multiple mega-environments.
Published in:
PeerJ, 2021, p. 1, doi. 10.7717/peerj.12350
By:
- Dhakal, Smit;
- Xiaoxiao Liu;
- Chenggen Chu;
- Yan Yang;
- Rudd, Jackie C.;
- Ibrahim, Amir M. H.;
- Qingwu Xue;
- Devkota, Ravindra N.;
- Baker, Jason A.;
- Baker, Shannon A.;
- Simoneaux, Bryan E.;
- Opena, Geraldine B.;
- Sutton, Russell;
- Jessup, Kirk E.;
- Kele Hui;
- Shichen Wang;
- Johnson, Charles D.;
- Metz, Richard P.;
- Shuyu Liu
Publication type:
Article
Chromosome diversity in Dasypyrum villosum, an important genetic and trait resource for hexaploid wheat engineering.
Published in:
Annals of Botany, 2023, v. 131, n. 1, p. 185, doi. 10.1093/aob/mcac054
By:
- Wu, Nan;
- He, Ziming;
- Fang, Jiaxin;
- Liu, Xin;
- Shen, Xia;
- Zhang, Juan;
- Lei, Yanhong;
- Xia, Yating;
- He, Huagang;
- Liu, Wenxuan;
- Chu, Chenggen;
- Wang, Conglei;
- Qi, Zengjun
Publication type:
Article
Frequent numerical and structural chromosome changes in early generations of synthetic hexaploid wheat.
Published in:
Genome, 2022, v. 65, n. 4, p. 205, doi. 10.1139/gen-2021-0074
By:
- Zhang, Siyu;
- Du, Pei;
- Lu, Xueying;
- Fang, Jiaxin;
- Wang, Jiaqi;
- Chen, Xuejun;
- Chen, Jianyong;
- Wu, Hao;
- Yang, Yang;
- Tsujimoto, Hisashi;
- Chu, Chenggen;
- Qi, Zengjun
Publication type:
Article
Physical organization of repetitive sequences and chromosome diversity of barley revealed by fluorescence in situ hybridization (FISH).
Published in:
Genome, 2019, v. 62, n. 5, p. 329, doi. 10.1139/gen-2018-0182
By:
- Zhang, Siyu;
- Zhu, Minqiu;
- Shang, Yi;
- Wang, Jiaqi;
- Dawadundup;
- Zhuang, Lifang;
- Zhang, Jinlong;
- Chu, Chenggen;
- Qi, Zengjun;
- McIntyre, L.
Publication type:
Article
A simple and efficient non-denaturing FISH method for maize chromosome differentiation using single-strand oligonucleotide probes.
Published in:
Genome, 2017, v. 60, n. 8, p. 657, doi. 10.1139/gen-2016-0167
By:
- Zhu, Minqiu;
- Du, Pei;
- Zhuang, Lifang;
- Chu, Chenggen;
- Zhao, Han;
- Qi, Zengjun;
- Schwarzacher, T.
Publication type:
Article
Development of oligonucleotides and multiplex probes for quick and accurate identification of wheat and Thinopyrum bessarabicum chromosomes.
Published in:
Genome, 2017, v. 60, n. 2, p. 93, doi. 10.1139/gen-2016-0095
By:
- Du, Pei;
- Zhuang, Lifang;
- Wang, Yanzhi;
- Yuan, Li;
- Wang, Qing;
- Wang, Danrui;
- Dawadondup;
- Tan, Lijun;
- Shen, Jian;
- Xu, Haibin;
- Zhao, Han;
- Chu, Chenggen;
- Qi, Zengjun;
- Cloutier, S.
Publication type:
Article
Chromosome aberrations induced by zebularine in triticale.
Published in:
Genome, 2016, v. 59, n. 7, p. 485, doi. 10.1139/gen-2016-0047
By:
- Ma, Xuhui;
- Wang, Qing;
- Wang, Yanzhi;
- Ma, Jieyun;
- Wu, Nan;
- Ni, Shuang;
- Luo, Tengxiao;
- Zhuang, Lifang;
- Chu, Chenggen;
- Cho, Seong-Woo;
- Tsujimoto, Hisashi;
- Qi, Zengjun;
- Puertas, M.
Publication type:
Article

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