Works matching AU Hautaniemi, Sampsa


Results: 87
    1

    Optimized detection of homologous recombination deficiency improves the prediction of clinical outcomes in cancer.

    Published in:
    NPJ Precision Oncology, 2022, v. 6, n. 1, p. 1, doi. 10.1038/s41698-022-00339-8
    By:
    • Perez-Villatoro, Fernando;
    • Oikkonen, Jaana;
    • Casado, Julia;
    • Chernenko, Anastasiya;
    • Gulhan, Doga C.;
    • Tumiati, Manuela;
    • Li, Yilin;
    • Lavikka, Kari;
    • Hietanen, Sakari;
    • Hynninen, Johanna;
    • Haltia, Ulla-Maija;
    • Tyrmi, Jaakko S.;
    • Laivuori, Hannele;
    • Konstantinopoulos, Panagiotis A.;
    • Hautaniemi, Sampsa;
    • Kauppi, Liisa;
    • Färkkilä, Anniina
    Publication type:
    Article
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    ROR1-STAT3 signaling contributes to ovarian cancer intra-tumor heterogeneity.

    Published in:
    Cell Death Discovery, 2023, v. 9, n. 1, p. 1, doi. 10.1038/s41420-023-01527-6
    By:
    • Piki, Emilia;
    • Dini, Alice;
    • Raivola, Juuli;
    • Salokas, Kari;
    • Zhang, Kaiyang;
    • Varjosalo, Markku;
    • Pellinen, Teijo;
    • Välimäki, Katja;
    • Veskimäe, Kristina Tabor;
    • Staff, Synnöve;
    • Hautaniemi, Sampsa;
    • Murumägi, Astrid;
    • Ungureanu, Daniela
    Publication type:
    Article
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    H&E image analysis pipeline for quantifying morphological features.

    Published in:
    Journal of Pathology Informatics, 2023, v. 14, p. 1, doi. 10.1016/j.jpi.2023.100339
    By:
    • Ariotta, Valeria;
    • Lehtonen, Oskari;
    • Salloum, Shams;
    • Micoli, Giulia;
    • Lavikka, Kari;
    • Rantanen, Ville;
    • Hynninen, Johanna;
    • Virtanen, Anni;
    • Hautaniemi, Sampsa
    Publication type:
    Article
    9

    Individual and combined effects of DNA methylation and copy number alterations on miRNA expression in breast tumors.

    Published in:
    Genome Biology, 2013, v. 14, n. 11, p. 1, doi. 10.1186/gb-2013-14-11-r126
    By:
    • Ragle Aure, Miriam;
    • Leivonen, Suvi-Katri;
    • Fleischer, Thomas;
    • Qian Zhu;
    • Overgaard, Jens;
    • Alsner, Jan;
    • Tramm, Trine;
    • Louhimo, Riku;
    • Grenaker Alnæs, Grethe I.;
    • Merja6Perälä;
    • Busato, Florence;
    • Touleimat, Nizar;
    • Tost, Jörg;
    • Børresen-Dale, Anne-Lise;
    • Hautaniemi, Sampsa;
    • Troyanskaya, Olga G.;
    • Lingjærde, Ole Christian;
    • Kleivi Sahlberg, Kristine;
    • Kristensen, Vessela N.
    Publication type:
    Article
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    ALDH1A1‐related stemness in high‐grade serous ovarian cancer is a negative prognostic indicator but potentially targetable by EGFR/mTOR‐PI3K/aurora kinase inhibitors.

    Published in:
    Journal of Pathology, 2020, v. 250, n. 2, p. 159, doi. 10.1002/path.5356
    By:
    • Kaipio, Katja;
    • Chen, Ping;
    • Roering, Pia;
    • Huhtinen, Kaisa;
    • Mikkonen, Piia;
    • Östling, Päivi;
    • Lehtinen, Laura;
    • Mansuri, Naziha;
    • Korpela, Taina;
    • Potdar, Swapnil;
    • Hynninen, Johanna;
    • Auranen, Annika;
    • Grénman, Seija;
    • Wennerberg, Krister;
    • Hautaniemi, Sampsa;
    • Carpén, Olli
    Publication type:
    Article
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    High frequency of TTK mutations in microsatellite-unstable colorectal cancer and evaluation of their effect on spindle assembly checkpoint.

    Published in:
    Carcinogenesis, 2011, v. 32, n. 3, p. 305, doi. 10.1093/carcin/bgq272
    By:
    • Niittymäki, Iina;
    • Gylfe, Alexandra;
    • Laine, Leena;
    • Laakso, Marko;
    • Lehtonen, Heli J.;
    • Kondelin, Johanna;
    • Tolvanen, Jaana;
    • Nousiainen, Kari;
    • Pouwels, Jeroen;
    • Järvinen, Heikki;
    • Nuorva, Kyösti;
    • Mecklin, Jukka-Pekka;
    • Mäkinen, Markus;
    • Ristimäki, Ari;
    • Ørntoft, Torben F.;
    • Hautaniemi, Sampsa;
    • Karhu, Auli;
    • Kallio, Marko J.;
    • Aaltonen, Lauri A.
    Publication type:
    Article
    18

    Multiomics characterization implicates PTK7 in ovarian cancer EMT and cell plasticity and offers strategies for therapeutic intervention.

    Published in:
    Cell Death & Disease, 2022, v. 13, n. 8, p. 1, doi. 10.1038/s41419-022-05161-5
    By:
    • Raivola, Juuli;
    • Dini, Alice;
    • Karvonen, Hanna;
    • Piki, Emilia;
    • Salokas, Kari;
    • Niininen, Wilhelmiina;
    • Kaleva, Laura;
    • Zhang, Kaiyang;
    • Arjama, Mariliina;
    • Gudoityte, Greta;
    • Seashore-Ludlow, Brinton;
    • Varjosalo, Markku;
    • Kallioniemi, Olli;
    • Hautaniemi, Sampsa;
    • Murumägi, Astrid;
    • Ungureanu, Daniela
    Publication type:
    Article
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    Role of RNA binding protein HuR in ductal carcinoma in situ of the breast.

    Published in:
    Journal of Pathology, 2011, v. 224, n. 4, p. 529, doi. 10.1002/path.2889
    By:
    • Heinonen, Mira;
    • Hemmes, Annabrita;
    • Salmenkivi, Kaisa;
    • Abdelmohsen, Kotb;
    • Vilén, Suvi-Tuuli;
    • Laakso, Marko;
    • Leidenius, Marjut;
    • Salo, Tuula;
    • Hautaniemi, Sampsa;
    • Gorospe, Myriam;
    • Heikkilä, Päivi;
    • Haglund, Caj;
    • Ristimäki, Ari
    Publication type:
    Article
    23

    Oncogenic Herpesvirus Utilizes Stress-Induced Cell Cycle Checkpoints for Efficient Lytic Replication.

    Published in:
    PLoS Pathogens, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.ppat.1005424
    By:
    • Balistreri, Giuseppe;
    • Viiliäinen, Johanna;
    • Turunen, Mikko;
    • Diaz, Raquel;
    • Lyly, Lauri;
    • Pekkonen, Pirita;
    • Rantala, Juha;
    • Ojala, Krista;
    • Sarek, Grzegorz;
    • Teesalu, Mari;
    • Denisova, Oxana;
    • Peltonen, Karita;
    • Julkunen, Ilkka;
    • Varjosalo, Markku;
    • Kainov, Denis;
    • Kallioniemi, Olli;
    • Laiho, Marikki;
    • Taipale, Jussi;
    • Hautaniemi, Sampsa;
    • Ojala, Päivi M.
    Publication type:
    Article
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    Nonsense-mediated decay microarray analysis identifies mutations of EPHB2 in human prostate cancer.

    Published in:
    Nature Genetics, 2004, v. 36, n. 9, p. 979, doi. 10.1038/ng1408
    By:
    • Huusko, Pia;
    • Ponciano-Jackson, Damaris;
    • Wolf, Maija;
    • Kiefer, Jeff A.;
    • Azorsa, David O.;
    • Tuzmen, Sukru;
    • Weaver, Don;
    • Robbins, Christiane;
    • Moses, Tracy;
    • Allinen, Minna;
    • Hautaniemi, Sampsa;
    • Chen, Yidong;
    • Elkahloun, Abdel;
    • Basik, Mark;
    • Bova, G. Steven;
    • Bubendorf, Lukas;
    • Lugli, Alessandro;
    • Sauter, Guido;
    • Schleutker, Johanna;
    • Ozcelik, Hilmi
    Publication type:
    Article
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    CGH-Plotter: MATLAB toolbox for CGH-data analysis.

    Published in:
    Bioinformatics, 2003, v. 19, n. 13, p. 1714, doi. 10.1093/bioinformatics/btg230
    By:
    • Reija Autio;
    • Sampsa Hautaniemi;
    • Päivikki Kauraniemi;
    • Olli Yli-Harja;
    • Jaakko Astola;
    • Maija Wolf;
    • Anne Kallioniemi
    Publication type:
    Article
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    ECCB2024: The 23rd European Conference on Computational Biology.

    Published in:
    Bioinformatics, 2024, v. 40, p. ii1, doi. 10.1093/bioinformatics/btae422
    By:
    • Kukkonen-Macchi, Anu;
    • Hautaniemi, Sampsa;
    • Heil, Katharina F;
    • Heinäniemi, Merja;
    • Jensen, Lars Juhl;
    • Junttila, Sini;
    • Käll, Lukas;
    • Laiho, Asta;
    • Maccallum, Peter;
    • Nykter, Matti;
    • Persson, Bengt;
    • Suomi, Tomi;
    • Bossche, Tim Van Den;
    • Nyrönen, Tommi H;
    • Elo, Laura L
    Publication type:
    Article
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