Works matching DE "RNA sequencing"

Results: 5000

Multi-omics exploration of CAV1<sup>+</sup> tumor epithelial subcelltype in oral squamous cell carcinoma and its impact on the immune microenvironment.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-02843-2

By:

Shi, Yan'an;
Shao, Yiting;
Xia, Bin;
Yang, Wenying;
Wang, Yan;
Yu, Lifu;
Zhang, Yonghui

Publication type:

Article

Factors Involved in Enamel Knot Establishment and Cap Formation.

Published in:

Journal of Dental Research, 2025, v. 104, n. 7, p. 784, doi. 10.1177/00220345251316834

By:

Steklikova, K.;
Dalecka, L.;
Kubovciak, J.;
Corneloup, C.;
Pantalacci, S.;
Hovorakova, M.

Publication type:

Article

Image-based identification and isolation of micronucleated cells to dissect cellular consequences.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.101579

By:

DiPeso, Lucian;
Pendyala, Sriram;
Huang, Heather Z.;
Fowler, Douglas M.;
Hatch, Emily M.

Publication type:

Article

Ferroptosis-related genes mediate tumor microenvironment and prognosis in triple-negative breast cancer via integrated RNA-seq analysis.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.100923

By:

Xuantong Gong;
Lishuang Gu;
Di Yang;
Yu He;
Qian Li;
Hao Qin;
Yong Wang

Publication type:

Article

Comparative analysis of the syncytiotrophoblast in placenta tissue and trophoblast organoids using snRNA sequencing.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.101170

By:

Keenen, Madeline M.;
Liheng Yang;
Huan Liang;
Farmer, Veronica J.;
Worota, Rizban E.;
Singh, Rohit;
Gladfelter, Amy S.;
Coyne, Carolyn B.

Publication type:

Article

Small sample amounts from rhizosphere of barley maintain microbial community structure and diversity revealed by total RNA sequencing.

Published in:

Plant Methods, 2025, v. 21, n. 1, p. 1, doi. 10.1186/s13007-025-01397-2

By:

Kindtler, Nikolaj L.;
Sheikh, Sanea;
Zervas, Athanasios;
Ellegaard-Jensen, Lea;
Feld, Louise;
Scheel, Maria;
Jiménez, Francisco Campuzano;
da Fonseca, Rute R.;
Laursen, Kristian H.;
Jacobsen, Carsten S.;
Ekelund, Flemming

Publication type:

Article

Sirtuin-3 activation by honokiol attenuated anesthesia/surgery-induced cognitive impairment and neuronal ferroptosis via inhibiting mitochondrial GPX4 acetylation.

Published in:

Journal of Nanobiotechnology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12951-025-03502-y

By:

Zeng, Lian;
Hu, Pengchao;
Wang, Xuan;
Ding, Xudong;
Wang, Qingsong;
Luo, Li;
Zhang, Yu;
Li, Mingyue;
Zhao, Yilin;
Li, Shiyong;
Luo, Ailin

Publication type:

Article

In situ and dynamic screening of extracellular vesicles as predictive biomarkers in immune-checkpoint inhibitor therapies.

Published in:

Journal of Nanobiotechnology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12951-025-03467-y

By:

Wang, Yihe;
Sun, Yue;
Liu, Mengqi;
Wang, Chao;
Huang, Miao;
Qiu, Jiaoyan;
Yang, Ningkai;
Zhang, Yu;
Liu, Hong;
Han, Lin

Publication type:

Article

CEBPB promotes transformation of endometrial complex atypical hyperplasia to endometrial cancer.

Published in:

BMC Cancer, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12885-025-14394-4

By:

Tan, Jiahong;
Zhao, Lin;
Wang, Daoqi;
Wu, Xiaodie;
Bi, Yongxiang;
Wang, Hanying;
Ma, Na;
Yang, Dehong;
Dong, Wei;
Zhang, Jie

Publication type:

Article

RNA‐sequencing: A reliable tool to unveil transcriptional landscape of paediatric B‐other acute lymphoblastic leukaemia.

Published in:

British Journal of Haematology, 2025, v. 206, n. 5, p. 1355, doi. 10.1111/bjh.20056

By:

Vicente‐Garcés, Clara;
Fernández, Guerau;
Esperanza‐Cebollada, Elena;
Richarte‐Franqués, Mercè;
Crespo‐Carrasco, Alba;
Montesdeoca, Sara;
Isola, Ignacio;
Sarrate, Edurne;
Cuatrecasas, Esther;
Rives, Susana;
Dapena, José Luis;
Camós, Mireia;
Vega‐García, Nerea

Publication type:

Article

Single-cell transcriptomics in colorectal cancer uncover the potential of metastasis and immune dysregulation of a cell cluster overexpressed PRSS22.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1586428

By:

Xu, Chengyuan;
Zhou, Ziheng;
Zhu, Dongfei;
Zhang, Qingyun;
Zhong, Shoubin;
Li, Zhenhua

Publication type:

Article

Variable selection in sparse multivariate GLARMA models: application to germination control by environment.

Published in:

Statistical Methods & Applications, 2025, v. 34, n. 2, p. 291, doi. 10.1007/s10260-025-00786-0

By:

Gomtsyan, Marina;
Lévy-Leduc, Céline;
Ouadah, Sarah;
Sansonnet, Laure;
Bailly, Christophe;
Rajjou, Loïc

Publication type:

Article

Single-molecule direct RNA sequencing reveals the shaping of epitranscriptome across multiple species.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60447-4

By:

Xie, Ying-Yuan;
Zhong, Zhen-Dong;
Chen, Hong-Xuan;
Ren, Ze-Hui;
Qiu, Yuan-Tao;
Lan, Ye-Lin;
Wu, Fu;
Kong, Jin-Wen;
Luo, Ru-Jia;
Zhang, Delong;
Liu, Biao-Di;
Shu, Yang;
Yin, Feng;
Wu, Jian;
Li, Zigang;
Zhang, Zhang;
Luo, Guan-Zheng

Publication type:

Article

Fusobacterium nucleatum downregulated MLH1 expression in colorectal cancer by activating autophagy-lysosome pathway.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1586146

By:

Ding, Tingting;
Wu, Minkang;
Zhao, Li;
Liu, Hu;
Cao, Xuanke;
Guo, Jing;
Zhu, Xingchen;
Zhao, Lamei;
Zhang, Heping;
Gao, Yaohui;
Wei, Qing

Publication type:

Article

Multi-omics analyses construct an inflammatory response based prognostic gene signature for cervical cancer and suggest tumor infiltrating monocytes subgroups as key players.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1563593

By:

Zhang, Yidong;
Zhu, Jiawei;
Hu, Ke;
Qiu, Jie;
Zhang, Fuquan

Publication type:

Article

Single-cell RNAseq of Angiotensin II-induced abdominal aortic tissue identifies aneurysmassociated cell clusters in C57BL/6J mice.

Published in:

Bioscience Reports, 2025, v. 45, n. 5, p. 343, doi. 10.1042/BSR20241235

By:

Huimin Li;
Xueyu Hao;
Peng Zhang;
Jun Guo;
Wei Li

Publication type:

Article

In situ and dynamic screening of extracellular vesicles as predictive biomarkers in immune-checkpoint inhibitor therapies.

Published in:

Journal of Nanobiotechnology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12951-025-03467-y

By:

Wang, Yihe;
Sun, Yue;
Liu, Mengqi;
Wang, Chao;
Huang, Miao;
Qiu, Jiaoyan;
Yang, Ningkai;
Zhang, Yu;
Liu, Hong;
Han, Lin

Publication type:

Article

SC2Spa: a deep learning based approach to map transcriptome to spatial origins at cellular resolution.

Published in:

BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06173-6

By:

Liao, Linbu;
Madan, Esha;
Palma, António M.;
Kim, Hyobin;
Kumar, Amit;
Bhoopathi, Praveen;
Winn, Robert;
Trevino, Jose;
Fisher, Paul;
Brakebusch, Cord Herbert;
Kim, Gahyun;
Kim, Junil;
Gogna, Rajan;
Won, Kyoung Jae

Publication type:

Article

Bulk and single-cell RNA-sequencing analyses revealed potential key genes and the role of CCL19/CCL21-CCR7 axis in hidradenitis suppurativa.

Published in:

PLoS ONE, 2025, v. 20, n. 6, p. 1, doi. 10.1371/journal.pone.0322565

By:

Lai, Xiaodong;
Yang, Yan;
Zhang, Haini;
Zhang, Chong;
Wang, Meng;
Chen, Wanxin;
Wang, Baoxi;
Yan, Yan

Publication type:

Article

Comprehensive analysis of breast cancer oxidative stress related gene signature: a combination of bulk and single-cell RNA sequencing analysis.

Published in:

Mammalian Genome, 2025, v. 36, n. 2, p. 692, doi. 10.1007/s00335-025-10130-2

By:

Shao, Yuheng;
Zhang, Yumeng;
Chen, Jie;
Yang, Liang;
Wu, Meihong;
Fan, Zhiyuan;
Zhuang, Zhigang

Publication type:

Article

Identification of NETs-related genes as diagnostic biomarkers in ischemic stroke using RNA sequencing and single-cell analysis.

Published in:

Mammalian Genome, 2025, v. 36, n. 2, p. 651, doi. 10.1007/s00335-025-10117-z

By:

Qin, Rongxing;
Xu, Wei;
Qin, Qingchun;
Liang, Xiaojun;
Lai, Xinyu;
Xie, Minshan;
Chen, Li

Publication type:

Article

Transcriptome analysis reveals methanol metabolism variations for the growth damage caused by overexpression of chimeric transactivators in Pichia pastoris.

Published in:

Synthetic & Systems Biotechnology, 2025, v. 10, n. 1, p. 133, doi. 10.1016/j.synbio.2024.09.008

By:

Qi Liu;
Ziyu He;
Menghao Cai

Publication type:

Article

Integrative Transcriptomics and Metabolomics Reveal the Key Metabolic Pathways in Endophyte-Infected Rice Seedlings Resistance to Na 2 CO 3 Stress.

Published in:

Plants (2223-7747), 2025, v. 14, n. 10, p. 1524, doi. 10.3390/plants14101524

By:

Wang, Xinnan;
Li, Yanan;
Sun, Hefei;
Zhang, Lihong;
Li, Xuemei

Publication type:

Article

Timing Is Everything: The Metabolic Partitioning of Suberin-Destined Carbon.

Published in:

Plants (2223-7747), 2025, v. 14, n. 10, p. 1433, doi. 10.3390/plants14101433

By:

Sinka, Jessica L.;
Bernards, Mark A.

Publication type:

Article

Alpha-Lipoic Acid Alleviates Lead-Induced Testicular Damage in Roosters by Reducing Oxidative Stress and Modulating Key Pathways.

Published in:

Toxics, 2025, v. 13, n. 5, p. 341, doi. 10.3390/toxics13050341

By:

Sun, Jiahao;
Malyar, Rahmani Mohammad;
Ye, Nanwei;
Wang, Yueyue;
Wei, Quanwei;
Shi, Fangxiong;
Li, Yansen

Publication type:

Article

Construction of Diagnostic Model for Regulatory T Cell-Related Genes in Sepsis Based on Machine Learning.

Published in:

Biomedicines, 2025, v. 13, n. 5, p. 1060, doi. 10.3390/biomedicines13051060

By:

Wang, Xuesong;
Guo, Zhe;
Wang, Xinrui;
Wang, Zhong

Publication type:

Article

Prevalence and Diversity of Haemosporidian–Associated Matryoshka RNA Viruses in a Natural Population of Wild Birds.

Published in:

Ecology & Evolution (20457758), 2025, v. 15, n. 5, p. 1, doi. 10.1002/ece3.71239

By:

Esperanza, Carlos W.;
Faircloth, Caroline E.;
Roy, Scott W.;
Sehgal, Ravinder N. M.

Publication type:

Article

Understanding of the characteristics of fibroblasts in ischemic cardiomyopathy using single-nucleus RNA sequencing.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-00260-7

By:

Zhang, Qianyuan;
Cai, Ziwen;
Zhang, Yongqiao

Publication type:

Article

Identification of novel therapeutic targets in hepatitis-B virus-associated membranous nephropathy using scRNA-seq and machine learning.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-03625-0

By:

Hu, Yongzheng;
An, Qian;
Yu, Xinxin;
Jiang, Wei

Publication type:

Article

Preterm birth increases susceptibility to hyperglycemia induced glomerular alterations in male mice.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-00103-5

By:

Cwiek, Aleksandra;
Dailey, Rachel K.;
Kameshwar, Ayyappa Kumar Sista;
Suzuki, Masako;
Isaac, Jaya;
deRonde, Kimberly;
Conaway, Mark;
Bennett, Kevin M.;
Baldelomar, Edwin J.;
Li, Teng;
Wu, Teresa;
Hoch, Matthew R.;
Chavkin, Nicholas W.;
Walker, Patrick D.;
Hirschi, Karen K.;
Reidy, Kimberly J.;
Charlton, Jennifer R.

Publication type:

Article

Integrated Analysis of Long Non-Coding RNAs and mRNAs Reveals Key Trans-Target Genes Associated with Heat Stress Response in Rhododendron delavayi.

Published in:

Life (2075-1729), 2025, v. 15, n. 5, p. 697, doi. 10.3390/life15050697

By:

Liu, Changming;
Liu, Yang;
Zhang, Xinyue;
An, Lujie;
Tian, Zhiguo

Publication type:

Article

Serine Hydroxymethyltransferase Modulates Midgut Physiology in Aedes aegypti Through miRNA Regulation: Insights from Small RNA Sequencing and Gene Expression Analysis.

Published in:

Biomolecules (2218-273X), 2025, v. 15, n. 5, p. 644, doi. 10.3390/biom15050644

By:

Pu, Qian;
Han, Yujiao;
Su, Zhuanzhuan;
Ren, Houming;
Ou, Qingshan;
Kashyap, Symphony;
Liu, Shiping

Publication type:

Article

FPCAM: A Weighted Dictionary-Driven Model for Single-Cell Annotation in Pulmonary Fibrosis.

Published in:

Biology (2079-7737), 2025, v. 14, n. 5, p. 479, doi. 10.3390/biology14050479

By:

Liu, Guojun;
Shi, Yan;
Huang, Hongxu;
Xiao, Ningkun;
Liu, Chuncheng;
Zhao, Hongyu;
Xing, Yongqiang;
Cai, Lu

Publication type:

Article

Inherited CD19 Deficiency Does Not Impair Plasma Cell Formation or Response to CXCL12.

Published in:

Journal of Clinical Immunology, 2025, v. 43, n. 7, p. 1543, doi. 10.1007/s10875-023-01511-w

By:

Walker, Kieran;
Mistry, Anoop;
Watson, Christopher M.;
Nadat, Fatima;
O'Callaghan, Eleanor;
Care, Matthew;
Crinnion, Laura A.;
Arumugakani, Gururaj;
Bonthron, David T.;
Carter, Clive;
Doody, Gina M.;
Savic, Sinisa

Publication type:

Article

Inherited CD19 Deficiency Does Not Impair Plasma Cell Formation or Response to CXCL12.

Published in:

Journal of Clinical Immunology, 2023, v. 43, n. 7, p. 1543, doi. 10.1007/s10875-023-01511-w

By:

Walker, Kieran;
Mistry, Anoop;
Watson, Christopher M.;
Nadat, Fatima;
O'Callaghan, Eleanor;
Care, Matthew;
Crinnion, Laura A.;
Arumugakani, Gururaj;
Bonthron, David T.;
Carter, Clive;
Doody, Gina M.;
Savic, Sinisa

Publication type:

Article

Targeting the Epigenetic Regulator CBX5 Promotes Fibroblast Metabolic Reprogramming and Inhibits Lung Fibrosis.

Published in:

American Journal of Respiratory Cell & Molecular Biology, 2025, v. 72, n. 6, p. 627, doi. 10.1165/rcmb.2024-0255OC

By:

Hong, Jeongmin;
Pham, Tho X.;
Lee, Jisu;
Raslan, Ahmed A.;
Nicolas, Kristina;
Sharov, Andrei;
Meridew, Jeffrey A.;
Urrutia, Raul A.;
Lomberk, Gwen;
Huang, Steven K.;
Ligresti, Giovanni

Publication type:

Article

Single-cell and spatial transcriptome analyses reveal tumor heterogeneity and immune remodeling involved in pituitary neuroendocrine tumor progression.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60028-5

By:

Su, Wan;
Ye, Zhang;
Liu, Jifang;
Deng, Kan;
Liu, Jinghua;
Zhu, Huijuan;
Duan, Lian;
Shi, Chen;
Wang, Linjie;
Zhao, Yuxing;
Gong, Fengying;
Zhang, Yi;
Hou, Bo;
You, Hui;
Feng, Feng;
Ling, Qing;
Xiao, Yu;
Guo, Yongdong;
Fan, Wenyi;
Zhang, Sumei

Publication type:

Article

Novel roles for CREG1 in hematopoiesis revealed by single-cell RNA sequencing.

Published in:

Cell & Bioscience, 2025, v. 15, n. 1, p. 1, doi. 10.1186/s13578-025-01407-9

By:

Han, Xiao;
Pang, Keliang;
Liu, Xiaohui;
Zhou, Jun;
Zhu, Jun;
Yuan, Hao

Publication type:

Article

Biomarker identification associated with M2 tumor-associated macrophage infiltration in glioblastoma.

Published in:

Frontiers in Neurology, 2025, p. 1, doi. 10.3389/fneur.2025.1545608

By:

Li, Xue-yuan;
Yu, Zhi-yun;
Li, Hong-jiang;
Yan, Dong-ming;
Yang, Chao;
Liu, Xian-zhi

Publication type:

Article

Single-cell RNA sequencing reveals the role of GTF2F2 in ovarian cancer oncogenesis and progression.

Published in:

Journal of Ovarian Research, 2025, v. 18, n. 1, p. 1, doi. 10.1186/s13048-025-01686-3

By:

Du, Haiyang;
Si, Gao;
Si, Jiqing;
Song, Xuejie;
Si, Fuchun

Publication type:

Article

Androgens alleviate the depression-like phenotype in female mice by inhibiting AVPR1a in the hippocampal brain region.

Published in:

Molecular Medicine, 2025, v. 31, n. 1, p. 1, doi. 10.1186/s10020-025-01272-9

By:

Ren, Shimin;
Wang, Xian;
Huang, Xueying;
Chen, Liyang;
Zhang, Bing;
Li, Yang;
Huang, Xin

Publication type:

Article

HDAC9-mediated deacetylation of CALML6 promotes excessive proliferation of glomerular mesangial cells in IgA nephropathy.

Published in:

Clinical & Experimental Nephrology, 2025, v. 29, n. 6, p. 734, doi. 10.1007/s10157-024-02620-5

By:

Zhuang, Xingxing;
Xiao, Fei;
Chen, Feihu;
Ni, Shoudong

Publication type:

Article

Viral and Viroid Communities in Peach Cultivars Grown in Bulgaria.

Published in:

Horticulturae, 2025, v. 11, n. 5, p. 503, doi. 10.3390/horticulturae11050503

By:

Gozmanova, Mariyana;
Baev, Vesselin;
Valkova, Rumyana;
Apostolova-Kuzova, Elena;
Jurac, Stoyanka;
Yahubyan, Galina;
Nacheva, Lilyana;
Milusheva, Snezhana

Publication type:

Article

Clinicopathological and molecular characterization of inflammatory breast cancer, the prospective INFLAME registry study.

Published in:

NPJ Breast Cancer, 2025, v. 11, n. 1, p. 1, doi. 10.1038/s41523-025-00764-5

By:

van Geel, Jasper J. L.;
Jongbloed, Elisabeth M.;
Moustaquim, Jasmine;
van der Schoor, Gonneke;
van Leeuwen-Stok, A. Elise;
Smid, Marcel;
van Deurzen, Carolien H. M.;
Wilting, Saskia M.;
Wesseling, Jelle;
Sonke, Gabe S.;
Martens, John W. M.;
Schröder, Carolina P.

Publication type:

Article

Cracking rare disorders: a new minimally invasive RNA-seq protocol.

Published in:

NPJ Genomic Medicine, 2025, v. 10, n. 1, p. 1, doi. 10.1038/s41525-025-00502-7

By:

De Cock, Laurenz;
D'haenens, Erika;
Vantomme, Lies;
Backers, Lynn;
Beyens, Aude;
Claes, Kathleen BM;
De Clercq, Griet;
de Putter, Robin;
Kumps, Candy;
Schuermans, Nika;
Sourbron, Jo;
Syryn, Hannes;
Tavernier, Simon;
Vanbelleghem, Eva;
Vanakker, Olivier;
Vandekerckhove, Bart;
Van Damme, Tim;
Callewaert, Bert;
Dheedene, Annelies;
Vergult, Sarah

Publication type:

Article

Molecular endotypes in sepsis: integration of multicohort transcriptomics based on RNA sequencing.

Published in:

Journal of Intensive Care, 2025, v. 13, n. 1, p. 1, doi. 10.1186/s40560-025-00802-1

By:

Mekata, Kengo;
Kyo, Michihito;
Tan, Modong;
Shime, Nobuaki;
Hirohashi, Nobuyuki

Publication type:

Article

Tumor-infiltrating immune cell signature score reveals prognostic biomarkers and therapeutic targets for colorectal cancer.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1583327

By:

Zuo, Xiaofei;
Long, Wujun;
Lin, Kai;
Jia, Guiqing

Publication type:

Article

Single cell atlas of canine natural killer cells identifies distinct circulating and tissue resident gene profiles.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1571085

By:

Razmara, Aryana M.;
Lammers, Marshall;
Judge, Sean J.;
Murphy, William J.;
Gaskill, Cameron E.;
Culp, William T.N.;
Gingrich, Alicia A.;
Morris, Zachary S.;
Rebhun, Robert B.;
Brown, C. Titus;
Vail, David M.;
Kent, Michael S.;
Canter, Robert J.

Publication type:

Article

Intercellular communication between FAP+ fibroblasts and SPP1+ macrophages in prostate cancer via multi-omics.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1560998

By:

Wu, Tingting;
Li, Xinyu;
Zheng, Fei;
Liu, Hanchao;
Yu, Yang

Publication type:

Article

Prognosis of cholangiocarcinoma patients based on multiple patterns of programmed cell death, integrated analysis of the immune microenvironment and drug sensitivity.

Published in:

Frontiers in Genetics, 2025, p. 1, doi. 10.3389/fgene.2025.1457204

By:

Xu, Yupeng;
Sun, Jian;
Yan, Xin;
Mao, Zhenliao;
Chen, Yiming

Publication type:

Article