Works matching DE "RNA sequencing"

Results: 5000

Transcriptome analysis reveals methanol metabolism variations for the growth damage caused by overexpression of chimeric transactivators in Pichia pastoris.

Published in:

Synthetic & Systems Biotechnology, 2025, v. 10, n. 1, p. 133, doi. 10.1016/j.synbio.2024.09.008

By:

Qi Liu;
Ziyu He;
Menghao Cai

Publication type:

Article

Integrative Transcriptomics and Metabolomics Reveal the Key Metabolic Pathways in Endophyte-Infected Rice Seedlings Resistance to Na 2 CO 3 Stress.

Published in:

Plants (2223-7747), 2025, v. 14, n. 10, p. 1524, doi. 10.3390/plants14101524

By:

Wang, Xinnan;
Li, Yanan;
Sun, Hefei;
Zhang, Lihong;
Li, Xuemei

Publication type:

Article

Timing Is Everything: The Metabolic Partitioning of Suberin-Destined Carbon.

Published in:

Plants (2223-7747), 2025, v. 14, n. 10, p. 1433, doi. 10.3390/plants14101433

By:

Sinka, Jessica L.;
Bernards, Mark A.

Publication type:

Article

Alpha-Lipoic Acid Alleviates Lead-Induced Testicular Damage in Roosters by Reducing Oxidative Stress and Modulating Key Pathways.

Published in:

Toxics, 2025, v. 13, n. 5, p. 341, doi. 10.3390/toxics13050341

By:

Sun, Jiahao;
Malyar, Rahmani Mohammad;
Ye, Nanwei;
Wang, Yueyue;
Wei, Quanwei;
Shi, Fangxiong;
Li, Yansen

Publication type:

Article

Construction of Diagnostic Model for Regulatory T Cell-Related Genes in Sepsis Based on Machine Learning.

Published in:

Biomedicines, 2025, v. 13, n. 5, p. 1060, doi. 10.3390/biomedicines13051060

By:

Wang, Xuesong;
Guo, Zhe;
Wang, Xinrui;
Wang, Zhong

Publication type:

Article

Prevalence and Diversity of Haemosporidian–Associated Matryoshka RNA Viruses in a Natural Population of Wild Birds.

Published in:

Ecology & Evolution (20457758), 2025, v. 15, n. 5, p. 1, doi. 10.1002/ece3.71239

By:

Esperanza, Carlos W.;
Faircloth, Caroline E.;
Roy, Scott W.;
Sehgal, Ravinder N. M.

Publication type:

Article

Identification of novel therapeutic targets in hepatitis-B virus-associated membranous nephropathy using scRNA-seq and machine learning.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-03625-0

By:

Hu, Yongzheng;
An, Qian;
Yu, Xinxin;
Jiang, Wei

Publication type:

Article

Preterm birth increases susceptibility to hyperglycemia induced glomerular alterations in male mice.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-00103-5

By:

Cwiek, Aleksandra;
Dailey, Rachel K.;
Kameshwar, Ayyappa Kumar Sista;
Suzuki, Masako;
Isaac, Jaya;
deRonde, Kimberly;
Conaway, Mark;
Bennett, Kevin M.;
Baldelomar, Edwin J.;
Li, Teng;
Wu, Teresa;
Hoch, Matthew R.;
Chavkin, Nicholas W.;
Walker, Patrick D.;
Hirschi, Karen K.;
Reidy, Kimberly J.;
Charlton, Jennifer R.

Publication type:

Article

Integrated Analysis of Long Non-Coding RNAs and mRNAs Reveals Key Trans-Target Genes Associated with Heat Stress Response in Rhododendron delavayi.

Published in:

Life (2075-1729), 2025, v. 15, n. 5, p. 697, doi. 10.3390/life15050697

By:

Liu, Changming;
Liu, Yang;
Zhang, Xinyue;
An, Lujie;
Tian, Zhiguo

Publication type:

Article

Serine Hydroxymethyltransferase Modulates Midgut Physiology in Aedes aegypti Through miRNA Regulation: Insights from Small RNA Sequencing and Gene Expression Analysis.

Published in:

Biomolecules (2218-273X), 2025, v. 15, n. 5, p. 644, doi. 10.3390/biom15050644

By:

Pu, Qian;
Han, Yujiao;
Su, Zhuanzhuan;
Ren, Houming;
Ou, Qingshan;
Kashyap, Symphony;
Liu, Shiping

Publication type:

Article

FPCAM: A Weighted Dictionary-Driven Model for Single-Cell Annotation in Pulmonary Fibrosis.

Published in:

Biology (2079-7737), 2025, v. 14, n. 5, p. 479, doi. 10.3390/biology14050479

By:

Liu, Guojun;
Shi, Yan;
Huang, Hongxu;
Xiao, Ningkun;
Liu, Chuncheng;
Zhao, Hongyu;
Xing, Yongqiang;
Cai, Lu

Publication type:

Article

Inherited CD19 Deficiency Does Not Impair Plasma Cell Formation or Response to CXCL12.

Published in:

Journal of Clinical Immunology, 2025, v. 43, n. 7, p. 1543, doi. 10.1007/s10875-023-01511-w

By:

Walker, Kieran;
Mistry, Anoop;
Watson, Christopher M.;
Nadat, Fatima;
O'Callaghan, Eleanor;
Care, Matthew;
Crinnion, Laura A.;
Arumugakani, Gururaj;
Bonthron, David T.;
Carter, Clive;
Doody, Gina M.;
Savic, Sinisa

Publication type:

Article

Inherited CD19 Deficiency Does Not Impair Plasma Cell Formation or Response to CXCL12.

Published in:

Journal of Clinical Immunology, 2023, v. 43, n. 7, p. 1543, doi. 10.1007/s10875-023-01511-w

By:

Walker, Kieran;
Mistry, Anoop;
Watson, Christopher M.;
Nadat, Fatima;
O'Callaghan, Eleanor;
Care, Matthew;
Crinnion, Laura A.;
Arumugakani, Gururaj;
Bonthron, David T.;
Carter, Clive;
Doody, Gina M.;
Savic, Sinisa

Publication type:

Article

Single-cell and spatial transcriptome analyses reveal tumor heterogeneity and immune remodeling involved in pituitary neuroendocrine tumor progression.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60028-5

By:

Su, Wan;
Ye, Zhang;
Liu, Jifang;
Deng, Kan;
Liu, Jinghua;
Zhu, Huijuan;
Duan, Lian;
Shi, Chen;
Wang, Linjie;
Zhao, Yuxing;
Gong, Fengying;
Zhang, Yi;
Hou, Bo;
You, Hui;
Feng, Feng;
Ling, Qing;
Xiao, Yu;
Guo, Yongdong;
Fan, Wenyi;
Zhang, Sumei

Publication type:

Article

Biomarker identification associated with M2 tumor-associated macrophage infiltration in glioblastoma.

Published in:

Frontiers in Neurology, 2025, p. 1, doi. 10.3389/fneur.2025.1545608

By:

Li, Xue-yuan;
Yu, Zhi-yun;
Li, Hong-jiang;
Yan, Dong-ming;
Yang, Chao;
Liu, Xian-zhi

Publication type:

Article

Single-cell RNA sequencing reveals the role of GTF2F2 in ovarian cancer oncogenesis and progression.

Published in:

Journal of Ovarian Research, 2025, v. 18, n. 1, p. 1, doi. 10.1186/s13048-025-01686-3

By:

Du, Haiyang;
Si, Gao;
Si, Jiqing;
Song, Xuejie;
Si, Fuchun

Publication type:

Article

Androgens alleviate the depression-like phenotype in female mice by inhibiting AVPR1a in the hippocampal brain region.

Published in:

Molecular Medicine, 2025, v. 31, n. 1, p. 1, doi. 10.1186/s10020-025-01272-9

By:

Ren, Shimin;
Wang, Xian;
Huang, Xueying;
Chen, Liyang;
Zhang, Bing;
Li, Yang;
Huang, Xin

Publication type:

Article

HDAC9-mediated deacetylation of CALML6 promotes excessive proliferation of glomerular mesangial cells in IgA nephropathy.

Published in:

Clinical & Experimental Nephrology, 2025, v. 29, n. 6, p. 734, doi. 10.1007/s10157-024-02620-5

By:

Zhuang, Xingxing;
Xiao, Fei;
Chen, Feihu;
Ni, Shoudong

Publication type:

Article

Viral and Viroid Communities in Peach Cultivars Grown in Bulgaria.

Published in:

Horticulturae, 2025, v. 11, n. 5, p. 503, doi. 10.3390/horticulturae11050503

By:

Gozmanova, Mariyana;
Baev, Vesselin;
Valkova, Rumyana;
Apostolova-Kuzova, Elena;
Jurac, Stoyanka;
Yahubyan, Galina;
Nacheva, Lilyana;
Milusheva, Snezhana

Publication type:

Article

Clinicopathological and molecular characterization of inflammatory breast cancer, the prospective INFLAME registry study.

Published in:

NPJ Breast Cancer, 2025, v. 11, n. 1, p. 1, doi. 10.1038/s41523-025-00764-5

By:

van Geel, Jasper J. L.;
Jongbloed, Elisabeth M.;
Moustaquim, Jasmine;
van der Schoor, Gonneke;
van Leeuwen-Stok, A. Elise;
Smid, Marcel;
van Deurzen, Carolien H. M.;
Wilting, Saskia M.;
Wesseling, Jelle;
Sonke, Gabe S.;
Martens, John W. M.;
Schröder, Carolina P.

Publication type:

Article

Cracking rare disorders: a new minimally invasive RNA-seq protocol.

Published in:

NPJ Genomic Medicine, 2025, v. 10, n. 1, p. 1, doi. 10.1038/s41525-025-00502-7

By:

De Cock, Laurenz;
D'haenens, Erika;
Vantomme, Lies;
Backers, Lynn;
Beyens, Aude;
Claes, Kathleen BM;
De Clercq, Griet;
de Putter, Robin;
Kumps, Candy;
Schuermans, Nika;
Sourbron, Jo;
Syryn, Hannes;
Tavernier, Simon;
Vanbelleghem, Eva;
Vanakker, Olivier;
Vandekerckhove, Bart;
Van Damme, Tim;
Callewaert, Bert;
Dheedene, Annelies;
Vergult, Sarah

Publication type:

Article

Molecular endotypes in sepsis: integration of multicohort transcriptomics based on RNA sequencing.

Published in:

Journal of Intensive Care, 2025, v. 13, n. 1, p. 1, doi. 10.1186/s40560-025-00802-1

By:

Mekata, Kengo;
Kyo, Michihito;
Tan, Modong;
Shime, Nobuaki;
Hirohashi, Nobuyuki

Publication type:

Article

Tumor-infiltrating immune cell signature score reveals prognostic biomarkers and therapeutic targets for colorectal cancer.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1583327

By:

Zuo, Xiaofei;
Long, Wujun;
Lin, Kai;
Jia, Guiqing

Publication type:

Article

Single cell atlas of canine natural killer cells identifies distinct circulating and tissue resident gene profiles.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1571085

By:

Razmara, Aryana M.;
Lammers, Marshall;
Judge, Sean J.;
Murphy, William J.;
Gaskill, Cameron E.;
Culp, William T.N.;
Gingrich, Alicia A.;
Morris, Zachary S.;
Rebhun, Robert B.;
Brown, C. Titus;
Vail, David M.;
Kent, Michael S.;
Canter, Robert J.

Publication type:

Article

Intercellular communication between FAP+ fibroblasts and SPP1+ macrophages in prostate cancer via multi-omics.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1560998

By:

Wu, Tingting;
Li, Xinyu;
Zheng, Fei;
Liu, Hanchao;
Yu, Yang

Publication type:

Article

Prognosis of cholangiocarcinoma patients based on multiple patterns of programmed cell death, integrated analysis of the immune microenvironment and drug sensitivity.

Published in:

Frontiers in Genetics, 2025, p. 1, doi. 10.3389/fgene.2025.1457204

By:

Xu, Yupeng;
Sun, Jian;
Yan, Xin;
Mao, Zhenliao;
Chen, Yiming

Publication type:

Article

Unraveling the Transcriptomic Profiles of Large and Small Donkey Follicles.

Published in:

Genes, 2025, v. 16, n. 5, p. 602, doi. 10.3390/genes16050602

By:

Wang, Yanping;
Gao, Zihao;
Zhang, Qiang;
Guo, Xuchuan;
Xia, Wei;
Gu, Xinli;
Zeng, Weibin

Publication type:

Article

Transcriptomic Approach in Understanding Fabry Nephropathy: A Review of the Literature and Proof-of-Concept.

Published in:

Genes, 2025, v. 16, n. 5, p. 601, doi. 10.3390/genes16050601

By:

Breznik, Nika;
Levstek, Tina;
Vujkovac, Bojan;
Cokan Vujkovac, Andreja;
Trebušak Podkrajšek, Katarina

Publication type:

Article

RNA-Seq of Chicken Embryo Liver Reveals Transcriptional Pathways Influenced by Egg Formaldehyde Treatment.

Published in:

Genes, 2025, v. 16, n. 5, p. 471, doi. 10.3390/genes16050471

By:

Özdemir, Mustafa;
Sajid, Ghulam Asghar;
Büyükkılıç Beyzi, Selma;
Kızılaslan, Mehmet;
Arzık, Yunus;
Yalçın, Servet;
White, Stephen N.;
Cinar, Mehmet Ulas

Publication type:

Article

Linking transcriptome and morphology in bone cells at cellular resolution with generative AI.

Published in:

Journal of Bone & Mineral Research, 2025, v. 40, n. 1, p. 20, doi. 10.1093/jbmr/zjae151

By:

Lu, Lu;
Ono, Noriaki;
Welch, Joshua D

Publication type:

Article

Single Cell RNA Sequencing of Papillary Cancer Mesenchymal Stem/Stromal Cells Reveals a Transcriptional Profile That Supports a Role for These Cells in Cancer Progression.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4957, doi. 10.3390/ijms26104957

By:

Jandu, Danny;
Latar, Nani;
Bajrami, Artida;
Queen, Rachel;
Hasoon, Megan;
Teasdale, Matthew;
Hussain, Rafiqul;
Coxhead, Jonathan;
Aspinall, Sebastian;
Meeson, Annette

Publication type:

Article

Therapeutic Potential of Quadrigemine I Against Lymphoma: Mechanistic Insights from Cell Lines and Xenograft Models Demonstrating DNA Damage, Oxidative Stress, and Pathway Regulation.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4848, doi. 10.3390/ijms26104848

By:

Pu, Junmei;
Shi, Wenfeng;
Cui, Jiabao;
Yang, Hui;
Cao, Jianxin;
Liu, Yaping;
Xiao, Shanshan;
Cheng, Guiguang

Publication type:

Article

Serum RNA Profile Reflects Fluid Status and Atrophic Retinal Changes in Neovascular Age-Related Macular Degeneration.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4852, doi. 10.3390/ijms26104852

By:

Heloterä, Hanna;
Kostanek, Joanna;
Liukkonen, Mikko;
Siintamo, Leea;
Linna-Kuosmanen, Suvi;
Watala, Cezary;
Blasiak, Janusz;
Kaarniranta, Kai

Publication type:

Article

NetLnc: A Network-Based Computational Framework to Identify Immune Checkpoint-Related lncRNAs for Immunotherapy Response in Melanoma.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4557, doi. 10.3390/ijms26104557

By:

Lu, Qianyi;
Li, Jian;
Chen, Wenli;
Wang, Zhuoru;
Wang, Di;
Liu, Chenyu;
Sun, Yue;
Jiang, Han;
Zhang, Caiyu;
Chang, Yetong;
Zhou, Jiajun;
Wu, Xiaohong;
Gao, Yue;
Ning, Shangwei

Publication type:

Article

Integrating Dynamical Systems Modeling with Spatiotemporal scRNA-Seq Data Analysis.

Published in:

Entropy, 2025, v. 27, n. 5, p. 453, doi. 10.3390/e27050453

By:

Zhang, Zhenyi;
Sun, Yuhao;
Peng, Qiangwei;
Li, Tiejun;
Zhou, Peijie

Publication type:

Article

Robust Single-Cell RNA-Seq Analysis Using Hyperdimensional Computing: Enhanced Clustering and Classification Methods.

Published in:

AI, 2025, v. 6, n. 5, p. 94, doi. 10.3390/ai6050094

By:

Mohammadi, Hossein;
Baranpouyan, Maziyar;
Thirunarayan, Krishnaprasad;
Chen, Lingwei

Publication type:

Article

A regularized Bayesian Dirichlet-multinomial regression model for integrating single-cell-level omics and patient-level clinical study data.

Published in:

Biometrics, 2025, v. 81, n. 1, p. 1, doi. 10.1093/biomtc/ujaf005

By:

Guo, Yanghong;
Yu, Lei;
Guo, Lei;
Xu, Lin;
Li, Qiwei

Publication type:

Article

Methanogenic symbionts of anaerobic ciliates are host and habitat specific.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae164

By:

Méndez-Sánchez, Daniel;
Schrecengost, Anna;
Rotterová, Johana;
Koštířová, Kateřina;
Beinart, Roxanne A;
Čepička, Ivan

Publication type:

Article

Divergent marine anaerobic ciliates harbor closely related Methanocorpusculum endosymbionts.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae125

By:

Schrecengost, Anna;
Rotterová, Johana;
Poláková, Kateřina;
Čepička, Ivan;
Beinart, Roxanne A

Publication type:

Article

Phylogenomic position of eupelagonemids, abundant, and diverse deep-ocean heterotrophs.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae040

By:

Lax, Gordon;
Okamoto, Noriko;
Keeling, Patrick J

Publication type:

Article

Bacterial adenine cross-feeding stems from a purine salvage bottleneck.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae034

By:

Chuang, Ying-Chih;
Haas, Nicholas W;
Pepin, Robert;
Behringer, Megan G;
Oda, Yasuhiro;
LaSarre, Breah;
Harwood, Caroline S;
McKinlay, James B

Publication type:

Article

Taxonomic and functional stability overrules seasonality in polar benthic microbiomes.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrad005

By:

Miksch, Sebastian;
Orellana, Luis H;
Oggerin de Orube, Monike;
Vidal-Melgosa, Silvia;
Solanki, Vipul;
Hehemann, Jan-Hendrik;
Amann, Rudolf;
Knittel, Katrin

Publication type:

Article

Integrative transcriptomic and single-cell analysis reveals IL27RA as a key immune regulator and therapeutic indicator in breast cancer.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-02811-w

By:

Chen, Yi;
Anwar, Munawar;
Wang, Xiaoli;
Zhang, Boxiang;
Ma, Binlin

Publication type:

Article

Time-Course Transcriptomic Dataset of Gallic Acid-Induced Human Cervical Carcinoma HeLa Cell Death.

Published in:

Data (2306-5729), 2025, v. 10, n. 5, p. 61, doi. 10.3390/data10050061

By:

Tang, Ho Man;
Cheung, Peter Chi Keung

Publication type:

Article

Prognostic significance of copper metabolism-related genes as risk markers in bladder urothelial carcinoma.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2025, v. 44, n. 7, p. 598, doi. 10.1080/15257770.2024.2387783

By:

Zhang, Jiamo;
Yang, Houwei;
Zhang, Xuan;
Chen, Jiangchuan;
Luo, Huaming;
Li, Changlong;
Chen, Xin

Publication type:

Article

Estradiol Reverses Ovariectomy-Induced Disruption of Hypothalamic Gene Expression and Behavior via Modulation of Gonadotropin Releasing Hormone and Calcium Signaling Pathways.

Published in:

Animals (2076-2615), 2025, v. 15, n. 10, p. 1467, doi. 10.3390/ani15101467

By:

Muhammad, Asim;
Muhammad, Mubashir;
Chao, Xiaohuan;
Zhang, Chunlei;
Chen, Jiahao;
Yang, Huan;
Liu, Shuhan;
Ding, Yuan;
Wang, Ziming;
Bi, Hongwei;
Guo, Wen;
Fan, Junhong;
Zhou, Bo

Publication type:

Article

Systematic Analysis of Biological Processes Reveals Gene Co-expression Modules Driving Pathway Dysregulation in Alzheimer's Disease.

Published in:

Aging & Disease, 2025, v. 16, n. 3, p. 1598, doi. 10.14336/AD.2024.0429

By:

Adeoye, Temitope;
Shah, Syed I.;
Ullah, Ghanim

Publication type:

Article

The Microbiome in Bronchial Biopsies from Smokers and Ex-Smokers with Stable COPD - A Metatranscriptomic Approach.

Published in:

COPD: Journal of Chronic Obstructive Pulmonary Disease, 2022, v. 19, n. 1, p. 81, doi. 10.1080/15412555.2022.2033193

By:

Ditz, B.;
Boekhoudt, J.;
Couto, N.;
Brandsma, C. A.;
Hiemstra, P. S.;
Tew, G. W.;
Neighbors, M.;
Grimbaldeston, M. A.;
Timens, W.;
Kerstjens, H. A. M.;
Rossen, J. W. A.;
Guryev, V.;
van den Berge, M.;
Faiz, A.

Publication type:

Article

Single Sperm RNA signatures reveal MicroRNA biomarkers for male subfertility.

Published in:

Journal of Assisted Reproduction & Genetics, 2024, v. 41, n. 11, p. 3119, doi. 10.1007/s10815-024-03264-w

By:

Abu-Halima, Masood;
Fischer, Ulrike;
Al Smadi, Mohammad A.;
Ludwig, Nicole;
Acheli, Anissa;
Engel, Annika;
Abdul-Khaliq, Hashim;
Meese, Eckart

Publication type:

Article

Enrichment of cell cycle pathways in progesterone-treated endometrial organoids of infertile women compared to fertile women.

Published in:

Journal of Assisted Reproduction & Genetics, 2024, v. 41, n. 9, p. 2405, doi. 10.1007/s10815-024-03173-y

By:

Bui, B. N.;
Ardisasmita, A. I.;
van de Vliert, F. H.;
Abendroth, M. S.;
van Hoesel, M.;
Mackens, S.;
Fuchs, S. A.;
Nieuwenhuis, E. E. S.;
Broekmans, F. J. M.;
Steba, G. S.

Publication type:

Article